FvH4_6g16510

Catalyzes the formation of S-adenosylmethionine from methionine and ATP

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
10449785 .. 10452366
2582 bp
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UTR
Exon/CDS
Intron
FvH4_6g16510.t1

Sequence Viewer

Length: 1173 bp
ATGGAGACATTCCTCTTTACATCCGAATCTGTCAATGAGGGTCACCCCGACAAGCTTTGTGATCAAGTTTCCGATGCTATTCTTGATGCCTGCTTGGAACAAGACCCAGAGAGCAAAGTGGCATGCGAGACCTGTACGAAAACGAACATGGTTATGGTCTTTGGTGAAATCACTACCAAGGCTAAGGTAGACTACGAGAAGATTGTCCGAGAGACATGCAGAGGAATTGGGTTTGTATCGGCTGATGTAGGTCTTGATGCTGACAACTGCAAGGTCCTCGTCAACATTGAGGAACAAAGCCCCGAAATCGCGCAAGGAGTTCACGGCCATTTCACTAAGAAGCCTGAGGAAATCGGAGCTGGTGACCAAGGCCACATGTTTGGTTATGCCACAGATGAAACAGCTGAGCTCATGCCTTTAACTCATGTCCTTTCTACTAAGCTTGGTGCCAAGCTCACTGAGGTCAGGAAGAACAAAACCGTCCCATGGTTGAGGCCTGATGGTAAGACACAAGTGACTGTTGAGTACAGAAATGATAACGGAGCCATGGTCCCTCTTCGGGTGCACACTATCCTTATCTCAACTCAACATGATGAGACTGTCACAAATGAGCAGATTGCTGCTGATTTGAAGGAACATGTGATCAAACCTGTTGTCCCTGCCCAGTATATTGATGACAAAACCATTTATCACCTCAACCCTTCGGGACGTTTTGTCATCGGAGGTCCCCATGGAGATGCTGGACTCACTGGTCGAAAGATCATCATAGATACCTATGGTGGCTGGGGTGCACACGGTGGTGGTGCTTTCTCCGGCAAGGATCCTACCAAGGTGGACCGAAGTGGTGCATACATTGTAAGGCAGGCAGCAAAGAGTGTGGTGGCATCTGGGCTTGCTCGCCGATGCATTGTTCAGGTTTCTTATGCAATTGGGGTCCCTGATCCCTTATCAGTGTTTGTGGATACCTATAAAACAGGAAAAATCCCAGACAGTGACATACTGGCTCTCATTAAGGAGAATTTTGACTTCAGGCCAGGAATGATTGCACTCCATCTTGATATGAAAAGGGGAGGCAACCACAGGTATCTGAAGACTGCTGCGTATGGACACTTTGGCCGCGATGACCCAGATTTCACTTGGGAAACCGTGAAGCACCTCAAGCCAAAGGCTTAA

Protein Analysis

391

Amino Acids

42.72

Weight (kDa)

6.02

Isoelectric Point (pI)

24.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S-AdoMet_synt_N PF00438 4 - 101 3.1e-43 S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M PF02772 117 - 238 2e-47 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_C PF02773 240 - 381 3.1e-60 S-adenosylmethionine synthetase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010678)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 750
AccB1I GGYRCC 1 cut(s) 446
AccI GTMKAC 1 cut(s) 189
AccII CGCG 2 cut(s) 311, 1119
AciI CCGC 1 cut(s) 1117
AclWI GGATC 3 cut(s) 815, 828, 935
AcoI YGGCCR 2 cut(s) 325, 1114
AcsI RAATTY 1 cut(s) 1018
AcuI CTGAAG 2 cut(s) 1012, 1109
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 2 cut(s) 136, 527
AfiI CCNNNNNNNGG 2 cut(s) 486, 559
AflIII ACRYGT 2 cut(s) 375, 637
AgsI TTSAA 1 cut(s) 631
AhdI GACNNNNNGTC 1 cut(s) 713
AjnI CCWGG 1 cut(s) 1033
AleI CACNNNNGTG 1 cut(s) 798
AluBI AGCT 6 cut(s) 55, 359, 404, 409, 442, 454
AluI AGCT 6 cut(s) 55, 359, 404, 409, 442, 454
Alw21I GWGCWC 3 cut(s) 411, 567, 793
Alw26I GTCTC 3 cut(s) 122, 206, 590
Alw44I GTGCAC 2 cut(s) 563, 789
AlwI GGATC 3 cut(s) 815, 828, 935
AoxI GGCC 5 cut(s) 325, 370, 494, 1031, 1114
ApaLI GTGCAC 2 cut(s) 563, 789
ApeKI GCWGC 3 cut(s) 620, 866, 1097
ApoI RAATTY 1 cut(s) 1018
ArsI GACNNNNNNTTYG 2 cut(s) 639, 671
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 5 cut(s) 274, 550, 725, 835, 934
AsuHPI GGTGA 4 cut(s) 35, 176, 374, 683
AvaII GGWCC 5 cut(s) 274, 550, 725, 835, 934
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 2 cut(s) 567, 793
BamHI GGATCC 1 cut(s) 820
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 1097
Bbv12I GWGCWC 3 cut(s) 411, 567, 793
BbvI GCAGC 3 cut(s) 607, 878, 1084
BccI CCATC 2 cut(s) 494, 1059
BceAI ACGGC 1 cut(s) 340
BcgI CGANNNNNNTGC 4 cut(s) 198, 232, 259, 293
BciT130I CCWGG 1 cut(s) 1035
BciVI GTATCC 1 cut(s) 955
BclI TGATCA 2 cut(s) 61, 642
BcoDI GTCTC 3 cut(s) 122, 206, 590
BfuI GTATCC 1 cut(s) 955
BisI GCNGC 4 cut(s) 621, 867, 1098, 1117
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 4 cut(s) 622, 868, 1099, 1118
Bme1390I CCNGG 1 cut(s) 1035
Bme18I GGWCC 5 cut(s) 274, 550, 725, 835, 934
BmeRI GACNNNNNGTC 1 cut(s) 713
BmgT120I GGNCC 5 cut(s) 274, 550, 725, 835, 934
BmiI GGNNCC 7 cut(s) 448, 544, 552, 727, 822, 935, 936
BmrFI CCNGG 1 cut(s) 1035
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 6 cut(s) 64, 76, 247, 727, 893, 893
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 1097
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 1142
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 6 cut(s) 177, 367, 485, 546, 730, 828
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 559
Bse1I ACTGG 3 cut(s) 664, 754, 1005
Bse21I CCTNAGG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 1035
BseDI CCNNGG 6 cut(s) 177, 367, 485, 546, 730, 828
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 486, 559
BseMII CTCAG 3 cut(s) 336, 396, 450
BseNI ACTGG 3 cut(s) 664, 754, 1005
BseSI GKGCMC 2 cut(s) 567, 793
BseXI GCAGC 3 cut(s) 607, 878, 1084
BseYI CCCAGC 1 cut(s) 783
Bsh1236I CGCG 2 cut(s) 311, 1119
BshFI GGCC 5 cut(s) 327, 372, 496, 1033, 1116
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 3 cut(s) 411, 567, 793
BsiSI CCGG 1 cut(s) 813
BslFI GGGAC 6 cut(s) 467, 536, 641, 711, 720, 920
BslI CCNNNNNNNGG 2 cut(s) 486, 559
BsmAI GTCTC 3 cut(s) 122, 206, 590
BsmFI GGGAC 6 cut(s) 467, 536, 641, 711, 720, 920
BsnI GGCC 5 cut(s) 327, 372, 496, 1033, 1116
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 411, 567, 793
Bsp143I GATC 5 cut(s) 61, 642, 759, 820, 940
Bsp1720I GCTNAGC 1 cut(s) 405
Bsp19I CCATGG 3 cut(s) 485, 546, 730
BspACI CCGC 1 cut(s) 1117
BspANI GGCC 5 cut(s) 327, 372, 496, 1033, 1116
BspCNI CTCAG 3 cut(s) 337, 397, 451
BspFNI CGCG 2 cut(s) 311, 1119
BspLI GGNNCC 7 cut(s) 448, 544, 552, 727, 822, 935, 936
BspPI GGATC 3 cut(s) 815, 828, 935
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 122
BsrI ACTGG 3 cut(s) 664, 754, 1005
BssECI CCNNGG 6 cut(s) 177, 367, 485, 546, 730, 828
BssMI GATC 5 cut(s) 61, 642, 759, 820, 940
BssT1I CCWWGG 6 cut(s) 177, 367, 485, 546, 730, 828
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 6 cut(s) 481, 520, 601, 797, 992, 1147
Bst6I CTCTTC 1 cut(s) 561
BstC8I GCNNGC 5 cut(s) 91, 124, 864, 894, 898
BstDEI CTNAG 6 cut(s) 183, 336, 345, 405, 438, 459
BstDSI CCRYGG 3 cut(s) 485, 546, 730
BstEII GGTNACC 2 cut(s) 41, 362
BstF5I GGATG 1 cut(s) 20
BstFNI CGCG 2 cut(s) 311, 1119
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 5 cut(s) 64, 645, 762, 823, 943
BstMAI GTCTC 3 cut(s) 122, 206, 590
BstMBI GATC 5 cut(s) 61, 642, 759, 820, 940
BstMWI GCNNNNNNNGC 1 cut(s) 1159
BstNI CCWGG 1 cut(s) 1035
BstNSI RCATGY 4 cut(s) 126, 219, 379, 641
BstPI GGTNACC 2 cut(s) 41, 362
BstSCI CCNGG 1 cut(s) 1033
BstSLI GKGCMC 2 cut(s) 567, 793
BstUI CGCG 2 cut(s) 311, 1119
BstV1I GCAGC 3 cut(s) 607, 878, 1084
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 1 cut(s) 820
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 1 cut(s) 820
Bsu36I CCTNAGG 1 cut(s) 345
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 5 cut(s) 327, 372, 496, 1033, 1116
BtgI CCRYGG 3 cut(s) 485, 546, 730
BtgZI GCGATG 1 cut(s) 1134
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 4 cut(s) 456, 747, 957, 997
Cac8I GCNNGC 5 cut(s) 91, 124, 864, 894, 898
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 5 cut(s) 274, 550, 725, 835, 934
Csp6I GTAC 2 cut(s) 135, 526
CspCI CAANNNNNGTGG 2 cut(s) 858, 893
CviQI GTAC 2 cut(s) 135, 526
DdeI CTNAG 6 cut(s) 183, 336, 345, 405, 438, 459
DpnI GATC 5 cut(s) 63, 644, 761, 822, 942
DpnII GATC 5 cut(s) 61, 642, 759, 820, 940
DraIII CACNNNGTG 1 cut(s) 797
DrdI GACNNNNNNGTC 1 cut(s) 750
DriI GACNNNNNGTC 1 cut(s) 713
DseDI GACNNNNNNGTC 1 cut(s) 750
EaeI YGGCCR 2 cut(s) 325, 1114
Eam1104I CTCTTC 1 cut(s) 561
Eam1105I GACNNNNNGTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 6 cut(s) 177, 367, 485, 546, 730, 828
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 5 cut(s) 274, 550, 725, 835, 934
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 1012, 1109
Eco81I CCTNAGG 1 cut(s) 345
Eco91I GGTNACC 2 cut(s) 41, 362
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 3 cut(s) 274, 725, 934
EcoO65I GGTNACC 2 cut(s) 41, 362
EcoRII CCWGG 1 cut(s) 1033
EcoT14I CCWWGG 6 cut(s) 177, 367, 485, 546, 730, 828
EcoT22I ATGCAT 1 cut(s) 908
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 6 cut(s) 177, 367, 485, 546, 730, 828
FaqI GGGAC 6 cut(s) 467, 536, 641, 711, 720, 920
FbaI TGATCA 2 cut(s) 61, 642
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 621, 867, 1098, 1117
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 4 cut(s) 621, 867, 1098, 1117
GlaI GCGC 1 cut(s) 312
GluI GCNGC 4 cut(s) 621, 867, 1098, 1117
GsaI CCCAGC 1 cut(s) 787
HaeIII GGCC 5 cut(s) 327, 372, 496, 1033, 1116
HapII CCGG 1 cut(s) 813
HhaI GCGC 1 cut(s) 313
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 53, 440
HinfI GANTC 2 cut(s) 26, 744
HpaII CCGG 1 cut(s) 813
HphI GGTGA 4 cut(s) 35, 176, 374, 683
Hpy166II GTNNAC 6 cut(s) 190, 283, 322, 565, 791, 835
Hpy188I TCNGA 6 cut(s) 25, 73, 209, 356, 722, 1089
Hpy188III TCNNGA 5 cut(s) 83, 254, 466, 705, 1055
Hpy8I GTNNAC 6 cut(s) 190, 283, 322, 565, 791, 835
HpyAV CCTTC 2 cut(s) 625, 711
HpyCH4III ACNGT 6 cut(s) 481, 520, 601, 797, 992, 1147
HpyCH4IV ACGT 1 cut(s) 709
HpyCH4V TGCA 8 cut(s) 219, 270, 565, 791, 848, 906, 926, 1046
HpyF10VI GCNNNNNNNGC 1 cut(s) 1159
HpyF3I CTNAG 6 cut(s) 183, 336, 345, 405, 438, 459
HpySE526I ACGT 1 cut(s) 709
HspAI GCGC 1 cut(s) 311
KflI GGGWCCC 1 cut(s) 934
Ksp22I TGATCA 2 cut(s) 61, 642
Kzo9I GATC 5 cut(s) 61, 642, 759, 820, 940
LmnI GCTCC 2 cut(s) 356, 542
Lsp1109I GCAGC 3 cut(s) 607, 878, 1084
LweI GCATC 6 cut(s) 64, 76, 247, 727, 893, 893
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 5 cut(s) 41, 362, 514, 601, 992
MalI GATC 5 cut(s) 63, 644, 761, 822, 942
MboI GATC 5 cut(s) 61, 642, 759, 820, 940
MboII GAAGA 4 cut(s) 211, 481, 548, 1102
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 3 cut(s) 411, 567, 793
MluCI AATT 3 cut(s) 225, 927, 1018
MlyI GAGTC 1 cut(s) 738
Mph1103I ATGCAT 1 cut(s) 908
MseI TTAA 3 cut(s) 419, 1011, 1171
MslI CAYNNNNRTG 3 cut(s) 152, 735, 798
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 813
MspR9I CCNGG 1 cut(s) 1035
MunI CAATTG 1 cut(s) 927
MvaI CCWGG 1 cut(s) 1035
MvnI CGCG 2 cut(s) 311, 1119
MwoI GCNNNNNNNGC 1 cut(s) 1159
NcoI CCATGG 3 cut(s) 485, 546, 730
NdeII GATC 5 cut(s) 61, 642, 759, 820, 940
NlaIV GGNNCC 7 cut(s) 448, 544, 552, 727, 822, 935, 936
NmuCI GTSAC 5 cut(s) 41, 362, 514, 601, 992
NsiI ATGCAT 1 cut(s) 908
NspI RCATGY 4 cut(s) 126, 219, 379, 641
OliI CACNNNNGTG 1 cut(s) 798
PaeI GCATGC 1 cut(s) 126
PceI AGGCCT 1 cut(s) 496
PciI ACATGT 2 cut(s) 375, 637
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 4 cut(s) 622, 868, 1099, 1118
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
PpuMI RGGWCCY 3 cut(s) 274, 725, 934
PscI ACATGT 2 cut(s) 375, 637
Psp124BI GAGCTC 1 cut(s) 411
Psp5II RGGWCCY 3 cut(s) 274, 725, 934
Psp6I CCWGG 1 cut(s) 1033
PspEI GGTNACC 2 cut(s) 41, 362
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 1 cut(s) 1033
PspN4I GGNNCC 7 cut(s) 448, 544, 552, 727, 822, 935, 936
PspPI GGNCC 5 cut(s) 274, 550, 725, 835, 934
PspPPI RGGWCCY 3 cut(s) 274, 725, 934
PsuI RGATCY 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 2 cut(s) 136, 527
RsaNI GTAC 2 cut(s) 135, 526
RseI CAYNNNNRTG 3 cut(s) 152, 735, 798
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 3 cut(s) 419, 1011, 1171
SatI GCNGC 4 cut(s) 621, 867, 1098, 1117
Sau3AI GATC 5 cut(s) 61, 642, 759, 820, 940
Sau96I GGNCC 5 cut(s) 274, 550, 725, 835, 934
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 1 cut(s) 1035
SduI GDGCHC 3 cut(s) 411, 567, 793
SfaNI GCATC 6 cut(s) 64, 76, 247, 727, 893, 893
SinI GGWCC 5 cut(s) 274, 550, 725, 835, 934
SmiMI CAYNNNNRTG 3 cut(s) 152, 735, 798
SmlI CTYRAG 1 cut(s) 1157
SmoI CTYRAG 1 cut(s) 1157
SphI GCATGC 1 cut(s) 126
Sse9I AATT 3 cut(s) 225, 927, 1018
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 1 cut(s) 1117
SstI GAGCTC 1 cut(s) 411
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 1 cut(s) 1033
StyI CCWWGG 6 cut(s) 177, 367, 485, 546, 730, 828
TaaI ACNGT 6 cut(s) 481, 520, 601, 797, 992, 1147
TaiI ACGT 1 cut(s) 712
TaqI TCGA 1 cut(s) 754
TaqII GACCGA 1 cut(s) 852
TasI AATT 3 cut(s) 225, 927, 1018
TatI WGTACW 1 cut(s) 525
TauI GCSGC 1 cut(s) 1119
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 419, 1011, 1171
Tru9I TTAA 3 cut(s) 419, 1011, 1171
TscAI CASTG 4 cut(s) 463, 754, 957, 997
TseFI GTSAC 5 cut(s) 41, 362, 514, 601, 992
TseI GCWGC 3 cut(s) 620, 866, 1097
Tsp45I GTSAC 5 cut(s) 41, 362, 514, 601, 992
TspDTI ATGAA 2 cut(s) 411, 1076
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 4 cut(s) 463, 754, 957, 997
VneI GTGCAC 2 cut(s) 563, 789
VpaK11BI GGWCC 5 cut(s) 274, 550, 725, 835, 934
XapI RAATTY 1 cut(s) 1018
XceI RCATGY 4 cut(s) 126, 219, 379, 641
XcmI CCANNNNNNNNNTGG 2 cut(s) 737, 1134
XmiI GTMKAC 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.