Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010678

Physical Location & Seq

Genomic Coordinates Reverse (-)

16381329 .. 16383226

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1091900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAAACGTTCCTCTTCACCTCCGAATCTGTCAACGAGGGACATCCCGACAAGCTTTGCGACCAAGTCTCAGATGCCGTTCTCGATGCTTGCTTGGAACAAGACCCGGAGAGCAAAGTTGCATGCGAGACATGTACGAAAACCAACATGGTCATGGTCTTCGGTGAGATCACAACAAAAGCGAAAGTAGATTACGAGAAAATAGTCCGAGACACTTGCAGAGGAATTGGGTTTACATCAGCTGATGTAGGCCTTGATGCTGACAACTGCAAAGTCCTCGTCAACATTGAGAAACAAAGCCCAGAAATTGCAGAGGGAGTTCATGGACACCTTACCAAGAAGCCCGAGGAAATTGGAGCTGGCGACCAAGGCCACATGTTTGGTTATGCCACTGATGAGACACCTGAGTTCATGCCACTCACCCATGTCCTTGCTACCAAGATTGGTGCCAAGCTTACGGAGGTCAGAAAGAATAAGACGGTCCCATGGCTGAGGCCCGATGGTAAGACCCAAGTGACTGTTGAGTACCAGAACGAGAACGGGGCCATGGTACCTATTCGGGTGCACACCATCCTCATCTCAACCCAACATGATGAGACTGTCACAAATGAGCAGATTGCTGCTGATTTGAAGGAACATGTGATCAAACCTGTCGTCCCAGCTCAATTCATTGATGACAAAACTATCTACCACTTGAACCCTTCAGGTCGATTCGTCATTGGAGGACCCCATGGAGATGCTGGGCTCACTGGCCGGAAGATAATTATAGACACCTATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCTGGAAAAGATCCAACCAAGGTTGACCGTAGTGGTGCATACGTTGTAAGGCAGGCAGCAAAAAGCGTTGTTGCATCCGGGCTTGCTCGCCGCTGTATTGTTCAGGTTTCTTATGCAATTGGCGTCCCAGATCCCCTGTCGGTTTTCGTGGATACCTACAGAACTGGAAAAATCCCAGACAAGGACATATTGGTTCTCATCAAGGAGAACTTTGACTATAGGCCGGGAATGATTGCCCTCAACCTTGATTTGAAAAGAGGAGGCAACTTCAGGTACCAGAAGACTGCTGCTTATGGTCATTTTGGCCGCGATGATCCAGATTTCACATGGGAGACCATCAAGATCCTCAAGCCAAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004478 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016765 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046872 GO:0046914 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

391

Amino Acids

42.75

Weight (kDa)

5.97

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-AdoMet_synt_N	PF00438	4 - 101	1.8e-43	S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M	PF02772	117 - 238	5.1e-48	S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_C	PF02773	240 - 381	2.9e-60	S-adenosylmethionine synthetase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36880 AT2G36880
fragaria_vesca	FvH4_6g16510
malus_domestica	MD04G1091900.v1.1 MD12G1109900.v1.1
prunus_persica	Prupe.7G128500_v2.0.a1
pyrus_communis	pycom04g08660 pycom12g11080
rosa_chinensis	RchiOBHm_Chr3g0470421
rosa_laevigata	RLG00000024269
rosa_multiflora	Rmu_sc0002383.1_g000009 Rmu_sc0020134.1_g000003
rosa_roxburghii	Rroxscaffold_6G00410830
rosa_rugosa	Rorug03G0108600 Rorug03G0108700
rosa_samantha	Rh3AG159100 Rh3BG183600 Rh3CG174100 Rh3DG191200
rosa_wichuraiana	Rw3G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	550, 1083
AccB1I	GGYRCC	3 cut(s)	446, 550, 1083
AccII	CGCG	1 cut(s)	1119
AciI	CCGC	2 cut(s)	901, 1117
AclI	AACGTT	1 cut(s)	8
AclWI	GGATC	4 cut(s)	815, 935, 1118, 1147
AcoI	YGGCCR	2 cut(s)	751, 1114
AcuI	CTGAAG	2 cut(s)	687, 1063
AcyI	GRCGYC	1 cut(s)	933
AfaI	GTAC	4 cut(s)	136, 527, 552, 1085
AfiI	CCNNNNNNNGG	1 cut(s)	991
AflIII	ACRYGT	3 cut(s)	131, 375, 637
AgsI	TTSAA	3 cut(s)	631, 697, 1063
AluBI	AGCT	5 cut(s)	55, 242, 359, 454, 662
AluI	AGCT	5 cut(s)	55, 242, 359, 454, 662
Alw21I	GWGCWC	2 cut(s)	567, 793
Alw26I	GTCTC	6 cut(s)	73, 122, 204, 392, 590, 1136
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	4 cut(s)	815, 935, 1118, 1147
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	7 cut(s)	250, 370, 494, 543, 751, 1031, 1114
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	3 cut(s)	620, 866, 1097
ArsI	GACNNNNNNTTYG	4 cut(s)	264, 296, 639, 671
Asp718I	GGTACC	2 cut(s)	550, 1083
AspS9I	GGNCC	4 cut(s)	481, 495, 543, 725
AsuC2I	CCSGG	3 cut(s)	107, 889, 1035
AsuHPI	GGTGA	3 cut(s)	10, 176, 412
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	481, 725
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	3 cut(s)	446, 550, 1083
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	151, 1097
Bbv12I	GWGCWC	2 cut(s)	567, 793
BbvCI	CCTCAGC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	607, 878, 1084
BccI	CCATC	3 cut(s)	494, 578, 1154
BceAI	ACGGC	1 cut(s)	62
BcgI	CGANNNNNNTGC	4 cut(s)	198, 232, 259, 293
BciVI	GTATCC	1 cut(s)	955
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	3 cut(s)	107, 889, 1035
BcoDI	GTCTC	6 cut(s)	73, 122, 204, 392, 590, 1136
BfmI	CTRYAG	2 cut(s)	967, 1027
BfuI	GTATCC	1 cut(s)	955
BisI	GCNGC	5 cut(s)	621, 867, 901, 1098, 1117
BlsI	GCNGC	5 cut(s)	622, 868, 902, 1099, 1118
Bme1390I	CCNGG	3 cut(s)	107, 889, 1035
Bme18I	GGWCC	2 cut(s)	481, 725
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	4 cut(s)	481, 495, 543, 725
BmiI	GGNNCC	6 cut(s)	448, 483, 544, 552, 727, 1085
BmrFI	CCNGG	3 cut(s)	107, 889, 1035
BmsI	GCATC	5 cut(s)	64, 76, 247, 727, 893
BpiI	GAAGAC	2 cut(s)	151, 1097
Bpu10I	CCTNAGC	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	1142
BpuMI	CCSGG	3 cut(s)	107, 889, 1035
BsaHI	GRCGYC	1 cut(s)	933
BsaI	GGTCTC	1 cut(s)	1136
BsaJI	CCNNGG	6 cut(s)	345, 367, 485, 546, 730, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	991
Bse1I	ACTGG	2 cut(s)	754, 979
BseDI	CCNNGG	6 cut(s)	345, 367, 485, 546, 730, 828
BseGI	GGATG	3 cut(s)	43, 570, 884
BseLI	CCNNNNNNNGG	1 cut(s)	991
BseMII	CTCAG	3 cut(s)	84, 396, 482
BseNI	ACTGG	2 cut(s)	754, 979
BseRI	GAGGAG	1 cut(s)	1083
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	3 cut(s)	607, 878, 1084
BseYI	CCCAGC	2 cut(s)	658, 740
Bsh1236I	CGCG	1 cut(s)	1119
BshFI	GGCC	7 cut(s)	252, 372, 496, 545, 753, 1033, 1116
BshNI	GGYRCC	3 cut(s)	446, 550, 1083
BsiHKAI	GWGCWC	2 cut(s)	567, 793
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	4 cut(s)	107, 754, 888, 1034
BslFI	GGGAC	4 cut(s)	54, 467, 641, 920
BslI	CCNNNNNNNGG	1 cut(s)	991
BsmAI	GTCTC	6 cut(s)	73, 122, 204, 392, 590, 1136
BsmFI	GGGAC	4 cut(s)	54, 467, 641, 920
BsnI	GGCC	7 cut(s)	252, 372, 496, 545, 753, 1033, 1116
Bso31I	GGTCTC	1 cut(s)	1136
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	3 cut(s)	567, 747, 793
Bsp143I	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
Bsp19I	CCATGG	3 cut(s)	485, 546, 730
BspACI	CCGC	2 cut(s)	901, 1117
BspANI	GGCC	7 cut(s)	252, 372, 496, 545, 753, 1033, 1116
BspCNI	CTCAG	3 cut(s)	83, 397, 483
BspFNI	CGCG	1 cut(s)	1119
BspLI	GGNNCC	6 cut(s)	448, 483, 544, 552, 727, 1085
BspPI	GGATC	4 cut(s)	815, 935, 1118, 1147
BspT107I	GGYRCC	3 cut(s)	446, 550, 1083
BspTNI	GGTCTC	1 cut(s)	1136
BsrI	ACTGG	2 cut(s)	754, 979
BssECI	CCNNGG	6 cut(s)	345, 367, 485, 546, 730, 828
BssMI	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
BssNI	GRCGYC	1 cut(s)	933
BssT1I	CCWWGG	5 cut(s)	367, 485, 546, 730, 828
Bst4CI	ACNGT	4 cut(s)	481, 520, 601, 839
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	933
BstC8I	GCNNGC	6 cut(s)	91, 124, 361, 864, 894, 898
BstDEI	CTNAG	3 cut(s)	70, 405, 491
BstDSI	CCRYGG	3 cut(s)	485, 546, 730
BstF5I	GGATG	3 cut(s)	43, 570, 884
BstFNI	CGCG	1 cut(s)	1119
BstKTI	GATC	6 cut(s)	171, 645, 823, 943, 1126, 1155
BstMAI	GTCTC	6 cut(s)	73, 122, 204, 392, 590, 1136
BstMBI	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNSI	RCATGY	4 cut(s)	126, 135, 379, 641
BstSCI	CCNGG	3 cut(s)	105, 887, 1033
BstSFI	CTRYAG	2 cut(s)	967, 1027
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	1 cut(s)	1119
BstV1I	GCAGC	3 cut(s)	607, 878, 1084
BstV2I	GAAGAC	2 cut(s)	151, 1097
BstX2I	RGATCY	3 cut(s)	820, 940, 1152
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	3 cut(s)	820, 940, 1152
BsuI	GTATCC	1 cut(s)	955
BsuRI	GGCC	7 cut(s)	252, 372, 496, 545, 753, 1033, 1116
BtgI	CCRYGG	3 cut(s)	485, 546, 730
BtgZI	GCGATG	1 cut(s)	1134
BtsCI	GGATG	3 cut(s)	43, 570, 884
BtsIMutI	CAGTG	2 cut(s)	390, 747
Cac8I	GCNNGC	6 cut(s)	91, 124, 361, 864, 894, 898
Cfr13I	GGNCC	4 cut(s)	481, 495, 543, 725
CseI	GACGC	1 cut(s)	922
Csp6I	GTAC	4 cut(s)	135, 526, 551, 1084
CviQI	GTAC	4 cut(s)	135, 526, 551, 1084
DdeI	CTNAG	3 cut(s)	70, 405, 491
DpnI	GATC	6 cut(s)	170, 644, 822, 942, 1125, 1154
DpnII	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
EaeI	YGGCCR	2 cut(s)	751, 1114
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	5 cut(s)	367, 485, 546, 730, 828
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	1136
Eco47I	GGWCC	2 cut(s)	481, 725
Eco57I	CTGAAG	2 cut(s)	687, 1063
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	725
EcoT14I	CCWWGG	5 cut(s)	367, 485, 546, 730, 828
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	5 cut(s)	367, 485, 546, 730, 828
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	4 cut(s)	54, 467, 641, 920
FbaI	TGATCA	1 cut(s)	642
Fnu4HI	GCNGC	5 cut(s)	621, 867, 901, 1098, 1117
FokI	GGATG	3 cut(s)	30, 557, 871
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	5 cut(s)	621, 867, 901, 1098, 1117
GluI	GCNGC	5 cut(s)	621, 867, 901, 1098, 1117
GsaI	CCCAGC	2 cut(s)	662, 744
HaeIII	GGCC	7 cut(s)	252, 372, 496, 545, 753, 1033, 1116
HapII	CCGG	4 cut(s)	107, 754, 888, 1034
HgaI	GACGC	1 cut(s)	922
Hin1I	GRCGYC	1 cut(s)	933
HincII	GTYRAC	3 cut(s)	34, 283, 835
HindII	GTYRAC	3 cut(s)	34, 283, 835
HindIII	AAGCTT	2 cut(s)	53, 452
HinfI	GANTC	2 cut(s)	26, 711
HpaII	CCGG	4 cut(s)	107, 754, 888, 1034
HphI	GGTGA	3 cut(s)	10, 176, 412
Hpy166II	GTNNAC	5 cut(s)	34, 234, 283, 565, 835
Hpy188I	TCNGA	4 cut(s)	25, 73, 209, 467
Hpy188III	TCNNGA	5 cut(s)	47, 83, 813, 1127, 1150
Hpy8I	GTNNAC	5 cut(s)	34, 234, 283, 565, 835
HpyAV	CCTTC	2 cut(s)	625, 711
HpyCH4III	ACNGT	4 cut(s)	481, 520, 601, 839
HpyCH4IV	ACGT	2 cut(s)	8, 852
HpyCH4V	TGCA	8 cut(s)	122, 219, 270, 311, 565, 848, 884, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	3 cut(s)	70, 405, 491
HpySE526I	ACGT	2 cut(s)	8, 852
Hsp92I	GRCGYC	1 cut(s)	933
KpnI	GGTACC	2 cut(s)	554, 1087
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	3 cut(s)	607, 878, 1084
LweI	GCATC	5 cut(s)	64, 76, 247, 727, 893
MaeII	ACGT	2 cut(s)	8, 852
MaeIII	GTNAC	2 cut(s)	514, 601
MalI	GATC	6 cut(s)	170, 644, 822, 942, 1125, 1154
MboI	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
MboII	GAAGA	4 cut(s)	7, 151, 769, 1102
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	3 cut(s)	820, 940, 1152
MhlI	GDGCHC	3 cut(s)	567, 747, 793
MluCI	AATT	6 cut(s)	225, 306, 351, 665, 762, 927
MmeI	TCCRAC	1 cut(s)	848
MseI	TTAA	1 cut(s)	1171
MslI	CAYNNNNRTG	3 cut(s)	152, 735, 798
MspA1I	CMGCKG	2 cut(s)	242, 903
MspI	CCGG	4 cut(s)	107, 754, 888, 1034
MspR9I	CCNGG	3 cut(s)	107, 889, 1035
MunI	CAATTG	1 cut(s)	927
MvnI	CGCG	1 cut(s)	1119
MwoI	GCNNNNNNNGC	1 cut(s)	369
NciI	CCSGG	3 cut(s)	107, 889, 1035
NcoI	CCATGG	3 cut(s)	485, 546, 730
NdeII	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
NlaIV	GGNNCC	6 cut(s)	448, 483, 544, 552, 727, 1085
NmuCI	GTSAC	2 cut(s)	514, 601
NspI	RCATGY	4 cut(s)	126, 135, 379, 641
PaeI	GCATGC	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	252
PciI	ACATGT	3 cut(s)	131, 375, 637
PfeI	GAWTC	2 cut(s)	26, 711
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	5 cut(s)	622, 868, 902, 1099, 1118
PpuMI	RGGWCCY	1 cut(s)	725
PscI	ACATGT	3 cut(s)	131, 375, 637
Psp1406I	AACGTT	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	725
PspFI	CCCAGC	2 cut(s)	658, 740
PspN4I	GGNNCC	6 cut(s)	448, 483, 544, 552, 727, 1085
PspPI	GGNCC	4 cut(s)	481, 495, 543, 725
PspPPI	RGGWCCY	1 cut(s)	725
PsuI	RGATCY	3 cut(s)	820, 940, 1152
PsyI	GACNNNGTC	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	4 cut(s)	136, 527, 552, 1085
RsaNI	GTAC	4 cut(s)	135, 526, 551, 1084
RseI	CAYNNNNRTG	3 cut(s)	152, 735, 798
SaqAI	TTAA	1 cut(s)	1171
SatI	GCNGC	5 cut(s)	621, 867, 901, 1098, 1117
Sau3AI	GATC	6 cut(s)	168, 642, 820, 940, 1123, 1152
Sau96I	GGNCC	4 cut(s)	481, 495, 543, 725
ScrFI	CCNGG	3 cut(s)	107, 889, 1035
SduI	GDGCHC	3 cut(s)	567, 747, 793
SfaNI	GCATC	5 cut(s)	64, 76, 247, 727, 893
SfcI	CTRYAG	2 cut(s)	967, 1027
SinI	GGWCC	2 cut(s)	481, 725
SmiMI	CAYNNNNRTG	3 cut(s)	152, 735, 798
SmlI	CTYRAG	1 cut(s)	1157
SmoI	CTYRAG	1 cut(s)	1157
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	6 cut(s)	225, 306, 351, 665, 762, 927
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	901, 1117
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	105, 887, 1033
StyI	CCWWGG	5 cut(s)	367, 485, 546, 730, 828
TaaI	ACNGT	4 cut(s)	481, 520, 601, 839
TaiI	ACGT	2 cut(s)	11, 855
TaqI	TCGA	2 cut(s)	84, 709
TasI	AATT	6 cut(s)	225, 306, 351, 665, 762, 927
TauI	GCSGC	2 cut(s)	903, 1119
TfiI	GAWTC	2 cut(s)	26, 711
Tru1I	TTAA	1 cut(s)	1171
Tru9I	TTAA	1 cut(s)	1171
TscAI	CASTG	2 cut(s)	397, 754
TseFI	GTSAC	2 cut(s)	514, 601
TseI	GCWGC	3 cut(s)	620, 866, 1097
Tsp45I	GTSAC	2 cut(s)	514, 601
TspDTI	ATGAA	3 cut(s)	311, 400, 658
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	397, 754
Tth111I	GACNNNGTC	1 cut(s)	65
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	481, 725
XceI	RCATGY	4 cut(s)	126, 135, 379, 641
XcmI	CCANNNNNNNNNTGG	3 cut(s)	151, 737, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.