Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

8754612 .. 8756613

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGATCAGATTCTGAACAAGGCGGGGTCCTACTGGTTCAGCCAGAAGGCCACCAAGGAGATCTCCTCCGTCGGCGATGACATCAACTCATTGCAATCCAGTATTTCAGGAGGAGCCAGTTGGTTGGTTAATAAGGTCAAAGGAAGCATGCAAAAGCCATTGCCTGAGCTTCTTAAGGAGTATGACCTCGCAGTAGGAATCTTTCCTCGGGATGCTACAAACTATGAATTCAATCAGGAGACAGGAAAACTTACCGTCTACATACCCTCAGTCTGTGAAGTGGGCTATAGAGATTCGTCTGTCTTGCGGTTTTTCACAACTGTAACTGGATACTTGAAGAAAGGAAAGCTAGAAGACGTTCAGGGGATCAAGACAAAGGTGACCTTACTTTGGGTAAAAGTGACCTCTATCTCGTCTGGGGGATCGAAGCTTAATTTCCAGGCTGGGATGAACAGAAGCAGGAGTAGAGAGGCTTATGAGGTTTCTAGAGACGGAATAACCGTAGACAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004478 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016765 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046872 GO:0046914 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

171

Amino Acids

18.97

Weight (kDa)

9.23

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	55 - 160	3.6e-29	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	258, 504
AciI	CCGC	2 cut(s)	23, 307
AclWI	GGATC	3 cut(s)	12, 374, 430
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	232, 337
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	3 cut(s)	169, 349, 430
AluI	AGCT	3 cut(s)	169, 349, 430
Alw26I	GTCTC	2 cut(s)	233, 483
AlwI	GGATC	3 cut(s)	12, 374, 430
AlwNI	CAGNNNCTG	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	233, 483
BfaI	CTAG	2 cut(s)	350, 486
BfmI	CTRYAG	1 cut(s)	286
BfrI	CTTAAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	28, 115
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu10I	CCTNAGC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	54, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	4 cut(s)	38, 99, 117, 331
Bse3DI	GCAATG	2 cut(s)	89, 158
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	54, 206
BseGI	GGATG	2 cut(s)	217, 453
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMI	GCAATG	2 cut(s)	89, 158
BseMII	CTCAG	2 cut(s)	156, 282
BseNI	ACTGG	4 cut(s)	38, 99, 117, 331
BseRI	GAGGAG	2 cut(s)	55, 126
BseYI	CCCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	233, 483
BsmBI	CGTCTC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	207
Bsp143I	GATC	4 cut(s)	4, 60, 366, 422
BspACI	CCGC	2 cut(s)	23, 307
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	157, 281
BspLI	GGNNCC	2 cut(s)	28, 115
BspPI	GGATC	3 cut(s)	12, 374, 430
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	89, 158
BsrI	ACTGG	4 cut(s)	38, 99, 117, 331
BssECI	CCNNGG	2 cut(s)	54, 206
BssMI	GATC	4 cut(s)	4, 60, 366, 422
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	256, 322, 502
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	165, 268
BstEII	GGTNACC	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	217, 453
BstKTI	GATC	4 cut(s)	7, 63, 369, 425
BstMAI	GTCTC	2 cut(s)	233, 483
BstMBI	GATC	4 cut(s)	4, 60, 366, 422
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	217, 453
Cac8I	GCNNGC	1 cut(s)	149
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	27
CviAII	CATG	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	165, 268
DpnI	GATC	4 cut(s)	6, 62, 368, 424
DpnII	GATC	4 cut(s)	4, 60, 366, 422
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	1 cut(s)	151
FaiI	YATR	6 cut(s)	149, 183, 225, 263, 288, 477
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	1 cut(s)	147
FauI	CCCGC	1 cut(s)	16
FblI	GTMKAC	2 cut(s)	258, 504
FokI	GGATG	2 cut(s)	224, 460
FspBI	CTAG	2 cut(s)	350, 486
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	10, 198, 293
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	2 cut(s)	259, 505
Hpy188I	TCNGA	2 cut(s)	9, 15
Hpy188III	TCNNGA	5 cut(s)	108, 209, 236, 370, 486
Hpy8I	GTNNAC	2 cut(s)	259, 505
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	3 cut(s)	256, 322, 502
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	94, 151
HpyF3I	CTNAG	2 cut(s)	165, 268
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	4, 60, 366, 422
LmnI	GCTCC	1 cut(s)	113
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	350, 486
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	322, 379, 400
MalI	GATC	4 cut(s)	6, 62, 368, 424
MboI	GATC	4 cut(s)	4, 60, 366, 422
MboII	GAAGA	2 cut(s)	349, 365
MflI	RGATCY	1 cut(s)	60
MluCI	AATT	2 cut(s)	227, 433
MnlI	CCTC	8 cut(s)	76, 104, 197, 216, 277, 415, 463, 472
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	4 cut(s)	129, 174, 432, 514
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
NdeII	GATC	4 cut(s)	4, 60, 366, 422
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	28, 115
NmuCI	GTSAC	2 cut(s)	379, 400
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	10, 198, 293
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	28, 115
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	129, 174, 432, 514
Sau3AI	GATC	4 cut(s)	4, 60, 366, 422
Sau96I	GGNCC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	2 cut(s)	227, 433
SsiI	CCGC	2 cut(s)	23, 307
SspMI	CTAG	2 cut(s)	350, 486
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	256, 322, 502
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	425
TasI	AATT	2 cut(s)	227, 433
TfiI	GAWTC	3 cut(s)	10, 198, 293
Tru1I	TTAA	4 cut(s)	129, 174, 432, 514
Tru9I	TTAA	4 cut(s)	129, 174, 432, 514
TseFI	GTSAC	2 cut(s)	379, 400
Tsp45I	GTSAC	2 cut(s)	379, 400
TspDTI	ATGAA	2 cut(s)	240, 464
TspGWI	ACGGA	2 cut(s)	58, 507
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	227
XbaI	TCTAGA	1 cut(s)	485
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	2 cut(s)	258, 504
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	350, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.