Rmu_sc0000423.1_g000035

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000423.1
OG0004879
Physical Location & Seq
Reverse (-)
122942 .. 123277
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000423.1_g000035.1.cds

Sequence Viewer

Length: 336 bp
atgccgtgtgtggttatacctgttaaggagttggttaagatttgtagggaggagggagttgatcaggttttcgtcgatgcggcacacagcattgggtgcactgaggttgatatgaaggagattggggctgattattatactagtaatttgcacaagtggttcttttgtccaccgtcgattgcgtttttgtattgtaggaagtcacccaagggtgtggaattggaccacccggtggtttcccatgagtatgggaatggattggctattgaaagtgcttggattgggactagggattacagccctcagttggttgtaagtgtcatttctatattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

111

Amino Acids

12.36

Weight (kDa)

5.21

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 232
AciI CCGC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 232
AfiI CCNNNNNNNGG 2 cut(s) 232, 307
AgsI TTSAA 1 cut(s) 269
AhlI ACTAGT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 97
ApaLI GTGCAC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 230
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 2 cut(s) 141, 288
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 307
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 232, 307
BseMII CTCAG 2 cut(s) 93, 317
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 232, 307
BsmFI GGGAC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 94, 316
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 102, 303
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 101
BstXI CCANNNNNNTGG 2 cut(s) 214, 248
BtsIMutI CAGTG 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 223
CviAII CATG 1 cut(s) 242
CviJI RGCY 3 cut(s) 128, 263, 300
CviKI_1 RGCY 3 cut(s) 128, 263, 300
DdeI CTNAG 2 cut(s) 102, 303
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraIII CACNNNGTG 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 245
FaiI YATR 6 cut(s) 17, 113, 138, 243, 249, 329
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 141, 288
GluI GCNGC 1 cut(s) 81
HapII CCGG 1 cut(s) 230
Hin1II CATG 1 cut(s) 245
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 99, 170
Hpy8I GTNNAC 2 cut(s) 99, 170
Hpy99I CGWCG 2 cut(s) 77, 178
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 99, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 102, 303
Hsp92II CATG 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 3 cut(s) 33, 50, 243
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 141, 288
MaeIII GTNAC 1 cut(s) 201
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 145, 218
MnlI CCTC 4 cut(s) 43, 46, 97, 312
MseI TTAA 2 cut(s) 24, 36
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 201
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 24, 36
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 101
SetI ASST 3 cut(s) 22, 69, 108
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 2 cut(s) 145, 218
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 141, 288
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 75, 176
TasI AATT 2 cut(s) 145, 218
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 24, 36
Tru9I TTAA 2 cut(s) 24, 36
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 232
VneI GTGCAC 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 223
XspI CTAG 2 cut(s) 141, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.