Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000409.1

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

9718 .. 10394

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000409.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgctccactacgcctacggcgccgtcaagaagtcgattgaggtctacgtcactcgcgccggcgggcacgtcattgaggtacccttgccgtttcctttgaattctaacgatgagattgtaaccgagtttaagaaggctttagagaaggggaaggctaatgatttggttgtggtgagtgccggagatgataagaagatatcgttgtggcataagaatgggcagagcttggggactattccggtggccgggacggacagtggtgacaacattgaggagtctatatcggcgcttagcttcagtaacaaggtttcgagatatatatgttctggtggtagttgtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

114

Amino Acids

12.19

Weight (kDa)

5.88

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	2 cut(s)	20, 79
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	100
AjiI	CACGTC	1 cut(s)	70
AluBI	AGCT	2 cut(s)	225, 294
AluI	AGCT	2 cut(s)	225, 294
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	100
Asp718I	GGTACC	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	23, 59, 289
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	184, 272
BaeGI	GKGCMC	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	20, 79
BceAI	ACGGC	3 cut(s)	8, 34, 73
BcnI	CCSGG	1 cut(s)	247
BfoI	RGCGCY	2 cut(s)	24, 290
BlpI	GCTNAGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	22, 81
BmrFI	CCNGG	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	2 cut(s)	20, 79
BsiSI	CCGG	4 cut(s)	60, 180, 239, 246
BslFI	GGGAC	2 cut(s)	244, 262
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	244, 262
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	22, 81
BspT107I	GGYRCC	2 cut(s)	20, 79
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	61, 65
BstDEI	CTNAG	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	24, 290
BstHHI	GCGC	3 cut(s)	23, 59, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	61, 65
CfoI	GCGC	3 cut(s)	23, 59, 289
Cfr10I	RCCGGY	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	5 cut(s)	137, 155, 225, 245, 294
CviKI_1	RGCY	5 cut(s)	137, 155, 225, 245, 294
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	290
DinI	GGCGCC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	198
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaiI	YATR	5 cut(s)	210, 281, 318, 320, 322
FaqI	GGGAC	2 cut(s)	244, 262
FauI	CCCGC	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	45
GlaI	GCGC	3 cut(s)	22, 58, 288
HaeII	RGCGCY	2 cut(s)	24, 290
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	4 cut(s)	60, 180, 239, 246
HhaI	GCGC	3 cut(s)	23, 59, 289
Hin1I	GRCGYC	1 cut(s)	21
Hin6I	GCGC	3 cut(s)	21, 57, 287
HinP1I	GCGC	3 cut(s)	21, 57, 287
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	4 cut(s)	60, 180, 239, 246
HphI	GGTGA	2 cut(s)	184, 272
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	28, 312
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	127, 139, 145
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	48, 69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	2 cut(s)	48, 69
Hsp92I	GRCGYC	1 cut(s)	21
HspAI	GCGC	3 cut(s)	21, 57, 287
KasI	GGCGCC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	5 cut(s)	73, 193, 252, 259, 312
MaeII	ACGT	2 cut(s)	48, 69
MaeIII	GTNAC	4 cut(s)	49, 118, 260, 299
MboII	GAAGA	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	100
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	3 cut(s)	34, 70, 265
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	4 cut(s)	60, 180, 239, 246
MspR9I	CCNGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	20
NaeI	GCCGGC	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	247
NgoMIV	GCCGGC	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	22, 81
NmuCI	GTSAC	2 cut(s)	49, 260
PdiI	GCCGGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	283
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	22, 81
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	129
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	7 cut(s)	45, 51, 72, 81, 227, 296, 309
SfoI	GGCGCC	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	63
SspDI	GGCGCC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	51, 72
TaqI	TCGA	2 cut(s)	35, 311
TasI	AATT	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	49, 260
Tsp45I	GTSAC	2 cut(s)	49, 260
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.