Rh3BG273600

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004879
Physical Location & Seq
Reverse (-)
26689697 .. 26690320
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG273600.1

Sequence Viewer

Length: 624 bp
ATGCTCCATTACGCCTACGGCGCCGTCAAGAAGTCGATCGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTGAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGAGTTTAAGAAAGCTTTTGAGAAGGGGAAGGCTAATGGTATGAGGGTTAGGTTAGCTGTGATTGATCATATTACTTCAATGCCGTGTGTGGTTATACCTGTTAAGGAGTTGGTTAGGATTTGTAGGGAGGAGGGGGTTGATCAGGTTTTCGTCGATGCGGCTCACAGCATTGGGTGCACTGAGGTTGATATGAAGGAGATTGGGGCTGATTATTATACTAGTAATTTGTACAAGTGGTTCTTTTGCCCGCCATCGATTGCGTTTTTGTATTGTAGGAAGTCGCCCAAGGGTGTGGAATTGCACCACCCGGTGGTTTCGCATGAGTATGGGAATGGATTGGCTATTGAAAGTGCTTGGATTGGGACTAGGGATTACAGCCCTCAATTGGTTGTTCCGGCGGTTTTGGACTTTGTCAATAGGTTTGAAGGCGGAATTGAGGGGATCAGGAAGAGAAATCATGAGACTGTTGTTGAGATGGGGCAGATGTTGGCTGAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

207

Amino Acids

23.21

Weight (kDa)

6.24

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 56 - 137 7.6e-09 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 20, 79
AccB7I CCANNNNNTGG 1 cut(s) 433
AccII CGCG 1 cut(s) 57
AciI CCGC 5 cut(s) 63, 281, 371, 521, 552
AclWI GGATC 1 cut(s) 572
AcsI RAATTY 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 21
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 2 cut(s) 81, 353
AfiI CCNNNNNNNGG 2 cut(s) 433, 508
AgsI TTSAA 4 cut(s) 100, 201, 470, 548
AhlI ACTAGT 1 cut(s) 341
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 2 cut(s) 137, 179
AluI AGCT 2 cut(s) 137, 179
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 578
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 1 cut(s) 572
AoxI GGCC 1 cut(s) 42
ApaLI GTGCAC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 79
AspLEI GCGC 2 cut(s) 23, 59
AsuC2I CCSGG 1 cut(s) 431
BaeGI GKGCMC 2 cut(s) 69, 302
BanI GGYRCC 2 cut(s) 20, 79
Bbv12I GWGCWC 1 cut(s) 302
BccI CCATC 2 cut(s) 382, 592
BceAI ACGGC 4 cut(s) 8, 34, 73, 190
BclI TGATCA 2 cut(s) 187, 262
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 578
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 2 cut(s) 342, 489
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 22, 81
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 615
BpuMI CCSGG 1 cut(s) 431
Bsa29I ATCGAT 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 508
Bse118I RCCGGY 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 433, 508
BseMII CTCAG 2 cut(s) 294, 606
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 2 cut(s) 69, 302
Bsh1236I CGCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 2 cut(s) 20, 79
BshVI ATCGAT 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 3 cut(s) 60, 431, 518
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 2 cut(s) 433, 508
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 69, 302
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 4 cut(s) 36, 187, 262, 564
Bsp1720I GCTNAGC 1 cut(s) 615
BspACI CCGC 5 cut(s) 63, 281, 371, 521, 552
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 295, 607
BspDI ATCGAT 1 cut(s) 377
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 2 cut(s) 22, 81
BspPI GGATC 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 20, 79
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 4 cut(s) 36, 187, 262, 564
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 351
BstC8I GCNNGC 3 cut(s) 61, 65, 371
BstDEI CTNAG 2 cut(s) 303, 615
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 2 cut(s) 23, 59
BstKTI GATC 4 cut(s) 39, 190, 265, 567
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 4 cut(s) 36, 187, 262, 564
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 20, 297
BstSCI CCNGG 1 cut(s) 429
BstSLI GKGCMC 2 cut(s) 69, 302
BstUI CGCG 1 cut(s) 57
BstXI CCANNNNNNTGG 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 377
BsuRI GGCC 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 377
BtrI CACGTC 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 3 cut(s) 61, 65, 371
CciI TCATGA 1 cut(s) 580
CfoI GCGC 2 cut(s) 23, 59
Cfr10I RCCGGY 1 cut(s) 59
ClaI ATCGAT 1 cut(s) 377
Csp6I GTAC 2 cut(s) 80, 352
CviAII CATG 2 cut(s) 443, 581
CviJI RGCY 9 cut(s) 44, 137, 155, 179, 284, 329, 464, 501, 614
CviKI_1 RGCY 9 cut(s) 44, 137, 155, 179, 284, 329, 464, 501, 614
CviQI GTAC 2 cut(s) 80, 352
DdeI CTNAG 2 cut(s) 303, 615
DinI GGCGCC 1 cut(s) 22
DpnI GATC 4 cut(s) 38, 189, 264, 566
DpnII GATC 4 cut(s) 36, 187, 262, 564
DraIII CACNNNGTG 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
EciI GGCGGA 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 408
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 2 cut(s) 446, 584
FaiI YATR 8 cut(s) 164, 192, 218, 314, 339, 444, 450, 582
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 499
FatI CATG 2 cut(s) 442, 580
FauI CCCGC 2 cut(s) 56, 378
FbaI TGATCA 2 cut(s) 187, 262
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 2 cut(s) 342, 489
GlaI GCGC 2 cut(s) 22, 58
GluI GCNGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 1 cut(s) 44
HapII CCGG 3 cut(s) 60, 431, 518
HhaI GCGC 2 cut(s) 23, 59
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 446, 584
Hin6I GCGC 2 cut(s) 21, 57
HinP1I GCGC 2 cut(s) 21, 57
HindIII AAGCTT 1 cut(s) 135
HpaII CCGG 3 cut(s) 60, 431, 518
Hpy166II GTNNAC 1 cut(s) 300
Hpy188III TCNNGA 3 cut(s) 28, 568, 581
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 139, 145, 310, 542
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 2 cut(s) 48, 69
HpyCH4V TGCA 2 cut(s) 300, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 297
HpyF3I CTNAG 2 cut(s) 303, 615
HpySE526I ACGT 2 cut(s) 48, 69
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 446, 584
HspAI GCGC 2 cut(s) 21, 57
KasI GGCGCC 1 cut(s) 20
KpnI GGTACC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 2 cut(s) 187, 262
Kzo9I GATC 4 cut(s) 36, 187, 262, 564
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 73, 234, 251, 444, 531, 553
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 342, 489
MaeII ACGT 2 cut(s) 48, 69
MaeIII GTNAC 2 cut(s) 49, 118
MalI GATC 4 cut(s) 38, 189, 264, 566
MboI GATC 4 cut(s) 36, 187, 262, 564
MboII GAAGA 1 cut(s) 583
MfeI CAATTG 1 cut(s) 506
MhlI GDGCHC 2 cut(s) 69, 302
MluCI AATT 5 cut(s) 100, 346, 419, 506, 555
Mly113I GGCGCC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 8 cut(s) 34, 70, 159, 244, 247, 298, 513, 553
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 2 cut(s) 129, 225
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 3 cut(s) 60, 431, 518
MspR9I CCNGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 506
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 20, 297
NaeI GCCGGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 1 cut(s) 431
NdeII GATC 4 cut(s) 36, 187, 262, 564
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 2 cut(s) 446, 584
NlaIV GGNNCC 2 cut(s) 22, 81
NmuCI GTSAC 1 cut(s) 49
PagI TCATGA 1 cut(s) 580
PceI AGGCCT 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdiI GCCGGC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 533
PflMI CCANNNNNTGG 1 cut(s) 433
PkrI GCNGC 1 cut(s) 283
Ple19I CGATCG 1 cut(s) 39
PluTI GGCGCC 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 22, 81
PsrI GAACNNNNNNTAC 2 cut(s) 344, 376
PsyI GACNNNGTC 1 cut(s) 533
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 2 cut(s) 81, 353
RsaNI GTAC 2 cut(s) 80, 352
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 2 cut(s) 129, 225
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 4 cut(s) 36, 187, 262, 564
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 2 cut(s) 69, 302
SfaNI GCATC 1 cut(s) 268
SfoI GGCGCC 1 cut(s) 22
SgrAI CRCCGGYG 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 447
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 5 cut(s) 100, 346, 419, 506, 555
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 5 cut(s) 63, 281, 371, 521, 552
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 2 cut(s) 342, 489
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 2 cut(s) 51, 72
TaqI TCGA 4 cut(s) 35, 39, 276, 377
TasI AATT 5 cut(s) 100, 346, 419, 506, 555
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 129, 225
Tru9I TTAA 2 cut(s) 129, 225
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 307
Tth111I GACNNNGTC 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 433
VneI GTGCAC 1 cut(s) 298
XapI RAATTY 1 cut(s) 100
XspI CTAG 2 cut(s) 342, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.