Rw7G035760

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004879
Physical Location & Seq
Reverse (-)
53596219 .. 53597139
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035760.1

Sequence Viewer

Length: 843 bp
ATGGCCTCCTTCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTACTTCATCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCTTACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCATCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCAGCCATCGTCCTCCAGCAGGCCACCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGCGACGCCGTCGTCATGTTCCACTACGCCTACGGCGCCGTCAAGAAGTCGATTGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTGAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGAGTTTAAGAAGGCTTTGGACAAGGGGAAGGCTAATGGTAGGAGGGTTAGGTTAGCTGTGATTGATCATATTACTTCAATGCCGTGTGTGGTTATACCTGTTAAGGAGTTGGTTAAGATTTGTAGGGAGGAGGGAGTTGATCAGGTTTTCGTCGATGCGGCACACAGCATTGGGTGCACTGAGGTTGATATGAAGGAGATTGGGGCTATTATTATACTAGTAATTTGCACAGTGGTTCTTTTGCCCGCCGTCGATTGCGTTTTTGTATTTGCTTGGATTGGGACTAGGGATTACAGCCCTCAGTTGGTTGTAAGTGTCATTTCTATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

280

Amino Acids

30.98

Weight (kDa)

6.34

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 60 - 239 3.2e-10 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 101, 383
Acc65I GGTACC 1 cut(s) 466
AccB1I GGYRCC 2 cut(s) 407, 466
AccI GTMKAC 2 cut(s) 279, 297
AccII CGCG 1 cut(s) 444
AciI CCGC 7 cut(s) 166, 241, 312, 315, 450, 668, 756
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 2 cut(s) 378, 408
AfaI GTAC 2 cut(s) 182, 468
AfiI CCNNNNNNNGG 3 cut(s) 253, 334, 814
AgsI TTSAA 3 cut(s) 211, 487, 588
AhlI ACTAGT 1 cut(s) 727
AjiI CACGTC 2 cut(s) 277, 457
AjnI CCWGG 2 cut(s) 153, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 126, 175, 566
AluI AGCT 3 cut(s) 126, 175, 566
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 1 cut(s) 292
Alw44I GTGCAC 1 cut(s) 685
AoxI GGCC 4 cut(s) 3, 156, 336, 429
ApaLI GTGCAC 1 cut(s) 685
ApeKI GCWGC 3 cut(s) 123, 172, 317
ApoI RAATTY 1 cut(s) 487
Asp718I GGTACC 1 cut(s) 466
AspLEI GCGC 3 cut(s) 165, 410, 446
AspS9I GGNCC 3 cut(s) 132, 157, 256
AvaII GGWCC 2 cut(s) 132, 256
BaeGI GKGCMC 2 cut(s) 456, 689
BanI GGYRCC 2 cut(s) 407, 466
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 3 cut(s) 135, 184, 329
BccI CCATC 2 cut(s) 299, 329
BceAI ACGGC 8 cut(s) 52, 136, 365, 395, 421, 460, 577, 743
BciT130I CCWGG 2 cut(s) 155, 343
BclI TGATCA 2 cut(s) 574, 649
BcoDI GTCTC 1 cut(s) 292
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 2 cut(s) 728, 795
BfoI RGCGCY 2 cut(s) 166, 411
BisI GCNGC 6 cut(s) 124, 166, 173, 315, 318, 669
BlsI GCNGC 6 cut(s) 125, 167, 174, 316, 319, 670
Bme1390I CCNGG 2 cut(s) 155, 343
Bme18I GGWCC 2 cut(s) 132, 256
BmgBI CACGTC 2 cut(s) 277, 457
BmgT120I GGNCC 3 cut(s) 132, 157, 256
BmiI GGNNCC 3 cut(s) 133, 409, 468
BmrFI CCNGG 2 cut(s) 155, 343
BmsI GCATC 2 cut(s) 237, 655
BpmI CTGGAG 2 cut(s) 137, 314
BpuEI CTTGAG 1 cut(s) 161
BsaHI GRCGYC 2 cut(s) 378, 408
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 342
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 334, 814
Bse118I RCCGGY 2 cut(s) 224, 446
BseBI CCWGG 2 cut(s) 155, 343
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 253, 334, 814
BseMII CTCAG 2 cut(s) 681, 824
BseRI GAGGAG 1 cut(s) 653
BseSI GKGCMC 2 cut(s) 456, 689
BseXI GCAGC 3 cut(s) 135, 184, 329
BseYI CCCAGC 2 cut(s) 159, 189
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 4 cut(s) 5, 158, 338, 431
BshNI GGYRCC 2 cut(s) 407, 466
BsiHKAI GWGCWC 1 cut(s) 689
BsiSI CCGG 2 cut(s) 225, 447
BslFI GGGAC 1 cut(s) 805
BslI CCNNNNNNNGG 3 cut(s) 253, 334, 814
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 805
BsnI GGCC 4 cut(s) 5, 158, 338, 431
Bso31I GGTCTC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 456, 689
Bsp143I GATC 3 cut(s) 196, 574, 649
BspACI CCGC 7 cut(s) 166, 241, 312, 315, 450, 668, 756
BspANI GGCC 4 cut(s) 5, 158, 338, 431
BspCNI CTCAG 2 cut(s) 682, 823
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 3 cut(s) 133, 409, 468
BspT107I GGYRCC 2 cut(s) 407, 466
BspTNI GGTCTC 1 cut(s) 292
BsrFI RCCGGY 2 cut(s) 224, 446
BssAI RCCGGY 2 cut(s) 224, 446
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 3 cut(s) 196, 574, 649
BssNI GRCGYC 2 cut(s) 378, 408
Bst2UI CCWGG 2 cut(s) 155, 343
Bst4CI ACNGT 2 cut(s) 103, 742
BstACI GRCGYC 2 cut(s) 378, 408
BstAPI GCANNNNNTGC 1 cut(s) 684
BstC8I GCNNGC 6 cut(s) 170, 226, 336, 448, 452, 756
BstDEI CTNAG 2 cut(s) 690, 810
BstENI CCTNNNNNAGG 2 cut(s) 251, 332
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 2 cut(s) 166, 411
BstHHI GCGC 3 cut(s) 165, 410, 446
BstKTI GATC 3 cut(s) 199, 577, 652
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 196, 574, 649
BstMWI GCNNNNNNNGC 4 cut(s) 169, 311, 407, 684
BstNI CCWGG 2 cut(s) 155, 343
BstSCI CCNGG 2 cut(s) 153, 341
BstSLI GKGCMC 2 cut(s) 456, 689
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 3 cut(s) 135, 184, 329
BsuRI GGCC 4 cut(s) 5, 158, 338, 431
BtrI CACGTC 2 cut(s) 277, 457
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 687, 747
Cac8I GCNNGC 6 cut(s) 170, 226, 336, 448, 452, 756
CfoI GCGC 3 cut(s) 165, 410, 446
Cfr10I RCCGGY 2 cut(s) 224, 446
Cfr13I GGNCC 3 cut(s) 132, 157, 256
CseI GACGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 181, 467
CviAII CATG 1 cut(s) 388
CviQI GTAC 2 cut(s) 181, 467
DdeI CTNAG 2 cut(s) 690, 810
DinI GGCGCC 1 cut(s) 409
DpnI GATC 3 cut(s) 198, 576, 651
DpnII GATC 3 cut(s) 196, 574, 649
DrdI GACNNNNNNGTC 2 cut(s) 101, 383
DseDI GACNNNNNNGTC 2 cut(s) 101, 383
Eco147I AGGCCT 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 132, 256
EcoNI CCTNNNNNAGG 2 cut(s) 251, 332
EcoO109I RGGNCCY 2 cut(s) 132, 256
EcoRI GAATTC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 153, 341
EgeI GGCGCC 1 cut(s) 409
EheI GGCGCC 1 cut(s) 409
FaeI CATG 1 cut(s) 391
FaiI YATR 6 cut(s) 389, 579, 605, 701, 725, 836
FaqI GGGAC 1 cut(s) 805
FatI CATG 1 cut(s) 387
FauI CCCGC 3 cut(s) 248, 443, 763
FbaI TGATCA 2 cut(s) 574, 649
FblI GTMKAC 2 cut(s) 279, 297
Fnu4HI GCNGC 6 cut(s) 124, 166, 173, 315, 318, 669
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 6 cut(s) 124, 166, 173, 315, 318, 669
FspBI CTAG 2 cut(s) 728, 795
GlaI GCGC 3 cut(s) 164, 409, 445
GluI GCNGC 6 cut(s) 124, 166, 173, 315, 318, 669
GsaI CCCAGC 2 cut(s) 163, 193
GsuI CTGGAG 2 cut(s) 137, 314
HaeII RGCGCY 2 cut(s) 166, 411
HaeIII GGCC 4 cut(s) 5, 158, 338, 431
HapII CCGG 2 cut(s) 225, 447
HgaI GACGC 1 cut(s) 386
HhaI GCGC 3 cut(s) 165, 410, 446
Hin1I GRCGYC 2 cut(s) 378, 408
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 3 cut(s) 163, 408, 444
HinP1I GCGC 3 cut(s) 163, 408, 444
HincII GTYRAC 2 cut(s) 280, 298
HindII GTYRAC 2 cut(s) 280, 298
HinfI GANTC 2 cut(s) 41, 111
HpaII CCGG 2 cut(s) 225, 447
Hpy166II GTNNAC 3 cut(s) 280, 298, 687
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 3 cut(s) 280, 298, 687
Hpy99I CGWCG 8 cut(s) 107, 281, 284, 299, 380, 386, 665, 764
HpyAV CCTTC 4 cut(s) 19, 514, 532, 697
HpyCH4III ACNGT 2 cut(s) 103, 742
HpyCH4IV ACGT 3 cut(s) 276, 435, 456
HpyCH4V TGCA 2 cut(s) 687, 738
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 311, 407, 684
HpyF3I CTNAG 2 cut(s) 690, 810
HpySE526I ACGT 3 cut(s) 276, 435, 456
Hsp92I GRCGYC 2 cut(s) 378, 408
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 3 cut(s) 163, 408, 444
KasI GGCGCC 1 cut(s) 407
KpnI GGTACC 1 cut(s) 470
KroI GCCGGC 2 cut(s) 224, 446
KroNI GCCGGC 2 cut(s) 226, 448
Ksp22I TGATCA 2 cut(s) 574, 649
Kzo9I GATC 3 cut(s) 196, 574, 649
Lsp1109I GCAGC 3 cut(s) 135, 184, 329
LweI GCATC 2 cut(s) 237, 655
MaeI CTAG 2 cut(s) 728, 795
MaeII ACGT 3 cut(s) 276, 435, 456
MaeIII GTNAC 2 cut(s) 436, 505
MalI GATC 3 cut(s) 198, 576, 651
MboI GATC 3 cut(s) 196, 574, 649
MhlI GDGCHC 2 cut(s) 456, 689
MluCI AATT 2 cut(s) 487, 732
Mly113I GGCGCC 1 cut(s) 408
MmeI TCCRAC 2 cut(s) 69, 516
MreI CGCCGGCG 1 cut(s) 446
MroNI GCCGGC 2 cut(s) 224, 446
MseI TTAA 3 cut(s) 516, 612, 624
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 2 cut(s) 225, 447
MspR9I CCNGG 2 cut(s) 155, 343
MvaI CCWGG 2 cut(s) 155, 343
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 169, 311, 407, 684
NaeI GCCGGC 2 cut(s) 226, 448
NarI GGCGCC 1 cut(s) 408
NdeII GATC 3 cut(s) 196, 574, 649
NgoMIV GCCGGC 2 cut(s) 224, 446
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 3 cut(s) 133, 409, 468
NmuCI GTSAC 1 cut(s) 436
PceI AGGCCT 1 cut(s) 431
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 273, 372
PdiI GCCGGC 2 cut(s) 226, 448
PfeI GAWTC 2 cut(s) 41, 111
PflFI GACNNNGTC 3 cut(s) 275, 284, 380
PkrI GCNGC 6 cut(s) 125, 167, 174, 316, 319, 670
PluTI GGCGCC 1 cut(s) 411
PpuMI RGGWCCY 2 cut(s) 132, 256
Psp5II RGGWCCY 2 cut(s) 132, 256
Psp6I CCWGG 2 cut(s) 153, 341
PspFI CCCAGC 2 cut(s) 159, 189
PspGI CCWGG 2 cut(s) 153, 341
PspN4I GGNNCC 3 cut(s) 133, 409, 468
PspPI GGNCC 3 cut(s) 132, 157, 256
PspPPI RGGWCCY 2 cut(s) 132, 256
PsyI GACNNNGTC 3 cut(s) 275, 284, 380
RsaI GTAC 2 cut(s) 182, 468
RsaNI GTAC 2 cut(s) 181, 467
SalI GTCGAC 2 cut(s) 278, 296
SaqAI TTAA 3 cut(s) 516, 612, 624
SatI GCNGC 6 cut(s) 124, 166, 173, 315, 318, 669
Sau3AI GATC 3 cut(s) 196, 574, 649
Sau96I GGNCC 3 cut(s) 132, 157, 256
ScrFI CCNGG 2 cut(s) 155, 343
SduI GDGCHC 2 cut(s) 456, 689
SfaNI GCATC 2 cut(s) 237, 655
SfoI GGCGCC 1 cut(s) 409
SgrAI CRCCGGYG 1 cut(s) 446
SgrDI CGTCGACG 1 cut(s) 278
SinI GGWCC 2 cut(s) 132, 256
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 727
Sse9I AATT 2 cut(s) 487, 732
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 7 cut(s) 166, 241, 312, 315, 450, 668, 756
SspDI GGCGCC 1 cut(s) 407
SspMI CTAG 2 cut(s) 728, 795
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 153, 341
TaaI ACNGT 2 cut(s) 103, 742
TaiI ACGT 3 cut(s) 279, 438, 459
TaqI TCGA 6 cut(s) 279, 297, 366, 422, 663, 762
TasI AATT 2 cut(s) 487, 732
TauI GCSGC 3 cut(s) 168, 317, 671
TfiI GAWTC 2 cut(s) 41, 111
Tru1I TTAA 3 cut(s) 516, 612, 624
Tru9I TTAA 3 cut(s) 516, 612, 624
TscAI CASTG 2 cut(s) 694, 747
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 3 cut(s) 123, 172, 317
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 2 cut(s) 70, 716
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 694, 747
Tth111I GACNNNGTC 3 cut(s) 275, 284, 380
VneI GTGCAC 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 132, 256
XagI CCTNNNNNAGG 2 cut(s) 251, 332
XapI RAATTY 1 cut(s) 487
XmiI GTMKAC 2 cut(s) 279, 297
XspI CTAG 2 cut(s) 728, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.