Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

57686752 .. 57687545

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG406900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTCCGGTCACCGGAAGTTCGATTCACCGGTCGGGCTCTCGACCTCAGTTAGACCTCAGCAAAGCTGCTATTCAGGGAACTTTTGAAGAGAGGGACCATACAATTCTGTTGCCTAATCAGTCTGATCACTTGTCTCATCTGGCTTTGGACATTGGAGGATCTCTCATCAAGTTGGTGTATTTTTCTAGACACGAAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGAGAGACTGGGTATTTCCAATGGTAGTCGAAGAAGCTACGCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGCTTCATTTATTCTAAACAACTTCACCGTGGAGGTATTCTCCTCTTGCTGTCTTTTGCCCCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DUF89 Fumble

Protein Analysis

135

Amino Acids

15.09

Weight (kDa)

8.88

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	47 - 116	6.3e-12	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	89, 235
AluBI	AGCT	3 cut(s)	68, 273, 341
AluI	AGCT	3 cut(s)	68, 273, 341
Alw26I	GTCTC	3 cut(s)	141, 235, 308
AlwI	GGATC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	327
AsiGI	ACCGGT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	4, 20, 355
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	141, 235, 308
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	6, 98
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	204
BplI	GAGNNNNNCTC	4 cut(s)	150, 182, 362, 394
Bpu10I	CCTNAGC	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	3 cut(s)	7, 14, 30
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	62, 73
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	35
BshTI	ACCGGT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	8, 15, 31
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	3 cut(s)	141, 235, 308
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	127, 161
Bsp1720I	GCTNAGC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	61, 72
BspLI	GGNNCC	2 cut(s)	6, 98
BspPI	GGATC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	127, 161
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	48, 59, 337
BstDSI	CCRYGG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	130, 164
BstMAI	GTCTC	3 cut(s)	141, 235, 308
BstMBI	GATC	2 cut(s)	127, 161
BstMCI	CGRYCG	1 cut(s)	35
BstPI	GGTNACC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	97
CspAI	ACCGGT	1 cut(s)	30
CviJI	RGCY	7 cut(s)	5, 39, 68, 146, 273, 295, 341
CviKI_1	RGCY	7 cut(s)	5, 39, 68, 146, 273, 295, 341
DdeI	CTNAG	3 cut(s)	48, 59, 337
DpnI	GATC	2 cut(s)	129, 163
DpnII	GATC	2 cut(s)	127, 161
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	308
FaiI	YATR	1 cut(s)	102
FaqI	GGGAC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	69
HapII	CCGG	3 cut(s)	8, 15, 31
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	3 cut(s)	8, 15, 31
HphI	GGTGA	3 cut(s)	4, 20, 355
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	42, 189
HpyAV	CCTTC	2 cut(s)	229, 285
HpyCH4III	ACNGT	1 cut(s)	367
HpyF3I	CTNAG	3 cut(s)	48, 59, 337
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 161
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	21, 28, 44, 62, 128, 230
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	129, 163
MboI	GATC	2 cut(s)	127, 161
MboII	GAAGA	4 cut(s)	101, 209, 235, 279
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	105, 207
MnlI	CCTC	6 cut(s)	57, 68, 87, 152, 364, 391
MseI	TTAA	2 cut(s)	327, 406
MspI	CCGG	3 cut(s)	8, 15, 31
MunI	CAATTG	1 cut(s)	207
NdeII	GATC	2 cut(s)	127, 161
NlaIV	GGNNCC	2 cut(s)	6, 98
NmuCI	GTSAC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	6, 98
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	327, 406
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	127, 161
Sau96I	GGNCC	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	49, 60, 70, 275, 343, 375
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	105, 207
SspMI	CTAG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	3 cut(s)	23, 43, 265
TasI	AATT	2 cut(s)	105, 207
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	327, 406
Tru9I	TTAA	2 cut(s)	327, 406
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	287, 333
VpaK11BI	GGWCC	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	327
XbaI	TCTAGA	1 cut(s)	188
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.