Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

23245060 .. 23247898

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G020020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTCCGGTCACCGGAAGTTCGATTCACCGGCCGGGCTCTCAGCCTCAGTTGGACCTCAACAAAGCTTCTATTCAGGGAACTTTTGAAGAGAGGGACCCTACAATTCTGTTGCCTAATCAGTCTGATCACTTGTCTCATCTGGCTTTGGACATTGGAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGAGAGACTGGGTATTTCCAATGGTAGTCGAAGAAGCTACCCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGACTTCATTTATTCTAAACAACTTCACCGTGGAGGTTTCTCTCACTTCCATGTGTACTGTAGGTCAACAACTGATCTTAGTTCAGTCTACTCAATCCAGATCCAAAACTTGAAATACTACTTCAAAGGTTGGGGCATGTGTCATTCTGGTTTAATTTGGTGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DUF89 Fumble

Protein Analysis

155

Amino Acids

17.7

Weight (kDa)

9.1

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	387
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	32
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	14, 245
AgsI	TTSAA	4 cut(s)	89, 196, 412, 424
AluBI	AGCT	2 cut(s)	68, 234
AluI	AGCT	2 cut(s)	68, 234
Alw26I	GTCTC	4 cut(s)	141, 153, 196, 269
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	55, 97
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	4, 20, 317
AvaII	GGWCC	2 cut(s)	55, 97
BanII	GRGCYC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	4 cut(s)	141, 153, 196, 269
BfmI	CTRYAG	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	2 cut(s)	55, 97
BmgT120I	GGNCC	2 cut(s)	55, 97
BmiI	GGNNCC	3 cut(s)	6, 98, 99
BmrFI	CCNGG	1 cut(s)	36
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	7, 14
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 245
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	14, 245
BseMII	CTCAG	2 cut(s)	56, 62
BseNI	ACTGG	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	8, 15, 31, 35
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	14, 245
BsmAI	GTCTC	4 cut(s)	141, 153, 196, 269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	127, 373, 399
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	55, 61
BspLI	GGNNCC	3 cut(s)	6, 98, 99
BspPI	GGATC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	3 cut(s)	127, 373, 399
Bst4CI	ACNGT	2 cut(s)	329, 359
Bst6I	CTCTTC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	42, 48, 298, 377
BstDSI	CCRYGG	1 cut(s)	328
BstEII	GGTNACC	1 cut(s)	10
BstKTI	GATC	3 cut(s)	130, 376, 402
BstMAI	GTCTC	4 cut(s)	141, 153, 196, 269
BstMBI	GATC	3 cut(s)	127, 373, 399
BstMCI	CGRYCG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	439
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BstZI	CGGCCG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	55, 97
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	350, 436
CviJI	RGCY	8 cut(s)	5, 34, 39, 46, 68, 146, 234, 256
CviKI_1	RGCY	8 cut(s)	5, 34, 39, 46, 68, 146, 234, 256
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	4 cut(s)	42, 48, 298, 377
DpnI	GATC	3 cut(s)	129, 375, 401
DpnII	GATC	3 cut(s)	127, 373, 399
EaeI	YGGCCR	1 cut(s)	32
EagI	CGGCCG	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	55, 97
Eco52I	CGGCCG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	2 cut(s)	353, 439
FaiI	YATR	2 cut(s)	351, 437
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	349, 435
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	4 cut(s)	8, 15, 31, 35
Hin1II	CATG	2 cut(s)	353, 439
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	4 cut(s)	8, 15, 31, 35
HphI	GGTGA	3 cut(s)	4, 20, 317
Hpy166II	GTNNAC	3 cut(s)	355, 366, 388
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	3 cut(s)	355, 366, 388
HpyAV	CCTTC	2 cut(s)	190, 246
HpyCH4III	ACNGT	2 cut(s)	329, 359
HpyF3I	CTNAG	4 cut(s)	42, 48, 298, 377
Hsp92II	CATG	2 cut(s)	353, 439
KflI	GGGWCCC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 373, 399
LmnI	GCTCC	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	129, 375, 401
MboI	GATC	3 cut(s)	127, 373, 399
MboII	GAAGA	3 cut(s)	101, 196, 240
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	3 cut(s)	105, 168, 453
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	57, 68, 87, 326
MseI	TTAA	2 cut(s)	288, 452
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	4 cut(s)	8, 15, 31, 35
MspR9I	CCNGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	168
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	127, 373, 399
NlaIII	CATG	2 cut(s)	353, 439
NlaIV	GGNNCC	3 cut(s)	6, 98, 99
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	10
PspN4I	GGNNCC	3 cut(s)	6, 98, 99
PspPI	GGNCC	2 cut(s)	55, 97
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	288, 452
Sau3AI	GATC	3 cut(s)	127, 373, 399
Sau96I	GGNCC	2 cut(s)	55, 97
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	60, 70, 236, 337, 365, 430
SfcI	CTRYAG	1 cut(s)	358
SinI	GGWCC	2 cut(s)	55, 97
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	105, 168, 453
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	329, 359
TaqI	TCGA	2 cut(s)	23, 226
TasI	AATT	3 cut(s)	105, 168, 453
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	288, 452
Tru9I	TTAA	2 cut(s)	288, 452
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	248, 295
VpaK11BI	GGWCC	2 cut(s)	55, 97
VspI	ATTAAT	1 cut(s)	288
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.