WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691 |
| rosa_multiflora | Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00106080 Rroxscaffold_4G00288390 |
| rosa_rugosa | Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200 |
| rosa_samantha | Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500 |
| rosa_wichuraiana | Rw3G020020 Rw5G015550 Rw7G035760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 74 |
| AciI | CCGC | 3 cut(s) | 36, 42, 45 |
| AclWI | GGATC | 2 cut(s) | 8, 83 |
| AcoI | YGGCCR | 1 cut(s) | 33 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 119, 144 |
| AjiI | CACGTC | 1 cut(s) | 130 |
| AluBI | AGCT | 2 cut(s) | 61, 105 |
| AluI | AGCT | 2 cut(s) | 61, 105 |
| Alw26I | GTCTC | 1 cut(s) | 103 |
| AlwI | GGATC | 2 cut(s) | 8, 83 |
| AoxI | GGCC | 1 cut(s) | 33 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 62 |
| AsuC2I | CCSGG | 1 cut(s) | 120 |
| BcnI | CCSGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 1 cut(s) | 103 |
| BisI | GCNGC | 3 cut(s) | 36, 43, 46 |
| BlsI | GCNGC | 3 cut(s) | 37, 44, 47 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| BmgBI | CACGTC | 1 cut(s) | 130 |
| BmiI | GGNNCC | 1 cut(s) | 149 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BpmI | CTGGAG | 1 cut(s) | 85 |
| BpuMI | CCSGG | 1 cut(s) | 120 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 119, 144 |
| Bse1I | ACTGG | 2 cut(s) | 36, 156 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 119, 144 |
| BseNI | ACTGG | 2 cut(s) | 36, 156 |
| BshFI | GGCC | 1 cut(s) | 35 |
| BsiSI | CCGG | 2 cut(s) | 84, 120 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 119, 144 |
| BsmAI | GTCTC | 1 cut(s) | 103 |
| BsmBI | CGTCTC | 1 cut(s) | 103 |
| BsnI | GGCC | 1 cut(s) | 35 |
| Bsp143I | GATC | 2 cut(s) | 13, 88 |
| BspACI | CCGC | 3 cut(s) | 36, 42, 45 |
| BspANI | GGCC | 1 cut(s) | 35 |
| BspLI | GGNNCC | 1 cut(s) | 149 |
| BspPI | GGATC | 2 cut(s) | 8, 83 |
| BspQI | GCTCTTC | 1 cut(s) | 68 |
| BsrI | ACTGG | 2 cut(s) | 36, 156 |
| BssMI | GATC | 2 cut(s) | 13, 88 |
| Bst4CI | ACNGT | 1 cut(s) | 55 |
| Bst6I | CTCTTC | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 1 cut(s) | 40 |
| BstKTI | GATC | 2 cut(s) | 16, 91 |
| BstMAI | GTCTC | 1 cut(s) | 103 |
| BstMBI | GATC | 2 cut(s) | 13, 88 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 93, 102 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 35 |
| BtrI | CACGTC | 1 cut(s) | 130 |
| BtsIMutI | CAGTG | 1 cut(s) | 27 |
| Cac8I | GCNNGC | 1 cut(s) | 40 |
| CseI | GACGC | 1 cut(s) | 85 |
| CviAII | CATG | 1 cut(s) | 93 |
| CviJI | RGCY | 3 cut(s) | 35, 61, 105 |
| CviKI_1 | RGCY | 3 cut(s) | 35, 61, 105 |
| DpnI | GATC | 2 cut(s) | 15, 90 |
| DpnII | GATC | 2 cut(s) | 13, 88 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 74 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 74 |
| EaeI | YGGCCR | 1 cut(s) | 33 |
| Eam1104I | CTCTTC | 1 cut(s) | 68 |
| EarI | CTCTTC | 1 cut(s) | 68 |
| Esp3I | CGTCTC | 1 cut(s) | 103 |
| FaeI | CATG | 1 cut(s) | 96 |
| FaiI | YATR | 2 cut(s) | 8, 94 |
| FatI | CATG | 1 cut(s) | 92 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 43, 46 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 43, 46 |
| GluI | GCNGC | 3 cut(s) | 36, 43, 46 |
| GsuI | CTGGAG | 1 cut(s) | 85 |
| HaeIII | GGCC | 1 cut(s) | 35 |
| HapII | CCGG | 2 cut(s) | 84, 120 |
| HgaI | GACGC | 1 cut(s) | 85 |
| Hin1II | CATG | 1 cut(s) | 96 |
| HincII | GTYRAC | 1 cut(s) | 133 |
| HindII | GTYRAC | 1 cut(s) | 133 |
| HpaII | CCGG | 2 cut(s) | 84, 120 |
| Hpy166II | GTNNAC | 1 cut(s) | 133 |
| Hpy8I | GTNNAC | 1 cut(s) | 133 |
| Hpy99I | CGWCG | 1 cut(s) | 71 |
| HpyAV | CCTTC | 1 cut(s) | 123 |
| HpyCH4III | ACNGT | 1 cut(s) | 55 |
| HpyCH4IV | ACGT | 2 cut(s) | 69, 129 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 93, 102 |
| HpySE526I | ACGT | 2 cut(s) | 69, 129 |
| Hsp92II | CATG | 1 cut(s) | 96 |
| Kzo9I | GATC | 2 cut(s) | 13, 88 |
| LguI | GCTCTTC | 1 cut(s) | 68 |
| LpnPI | CCDG | 4 cut(s) | 17, 97, 115, 133 |
| MaeII | ACGT | 2 cut(s) | 69, 129 |
| MaeIII | GTNAC | 1 cut(s) | 22 |
| MalI | GATC | 2 cut(s) | 15, 90 |
| MboI | GATC | 2 cut(s) | 13, 88 |
| MboII | GAAGA | 1 cut(s) | 55 |
| MroXI | GAANNNNTTC | 1 cut(s) | 62 |
| MspI | CCGG | 2 cut(s) | 84, 120 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 93, 102 |
| NciI | CCSGG | 1 cut(s) | 120 |
| NdeII | GATC | 2 cut(s) | 13, 88 |
| NlaIII | CATG | 1 cut(s) | 96 |
| NlaIV | GGNNCC | 1 cut(s) | 149 |
| NmuCI | GTSAC | 1 cut(s) | 22 |
| PciSI | GCTCTTC | 1 cut(s) | 68 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 72, 135 |
| PdmI | GAANNNNTTC | 1 cut(s) | 62 |
| PkrI | GCNGC | 3 cut(s) | 37, 44, 47 |
| PspN4I | GGNNCC | 1 cut(s) | 149 |
| SapI | GCTCTTC | 1 cut(s) | 68 |
| SatI | GCNGC | 3 cut(s) | 36, 43, 46 |
| Sau3AI | GATC | 2 cut(s) | 13, 88 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SetI | ASST | 4 cut(s) | 63, 72, 107, 132 |
| SsiI | CCGC | 3 cut(s) | 36, 42, 45 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| TaaI | ACNGT | 1 cut(s) | 55 |
| TaiI | ACGT | 2 cut(s) | 72, 132 |
| TaqI | TCGA | 2 cut(s) | 12, 66 |
| TauI | GCSGC | 3 cut(s) | 38, 45, 48 |
| TscAI | CASTG | 1 cut(s) | 27 |
| TseFI | GTSAC | 1 cut(s) | 22 |
| Tsp45I | GTSAC | 1 cut(s) | 22 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 3 cut(s) | 6, 64, 127 |
| TspRI | CASTG | 1 cut(s) | 27 |
| XmnI | GAANNNNTTC | 1 cut(s) | 62 |