Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

53122789 .. 53123759

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG408600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTCCGGTCACCGGAAGTTCGATTCACCGGTCGGGCTCTCGGCCTCAGTTGGACCTCAGCAAAGCTGCTATTCAGGGAACTTTTGAAGAGAGGGACCCTACAATTCTGTTGCCTAATCAGTCTGATCACTTGTCTCATCTGGCTTTGGACATTGGAAGATCTCTCATCAAGTTGGTGTATTTTTCTAGACACGAAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGAGAGACTGGGTATTTCCAATGGTAGTCGAAGAAGCTACCCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGACTTCATTTATTCTAAACAACTTCACCGTGGAGGGATGGATGTTCGTATTTGGAATCCTGAAGCCCCAACCAATGAAAATGCTGTAATTAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DUF89 Fumble

Protein Analysis

144

Amino Acids

16.31

Weight (kDa)

9.51

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	47 - 123	5.1e-13	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	14, 284
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	89, 235
AluBI	AGCT	2 cut(s)	68, 273
AluI	AGCT	2 cut(s)	68, 273
Alw26I	GTCTC	3 cut(s)	141, 235, 308
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	327
AsiGI	ACCGGT	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	55, 97
AsuHPI	GGTGA	3 cut(s)	4, 20, 356
AvaII	GGWCC	2 cut(s)	55, 97
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	370
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	141, 235, 308
BfaI	CTAG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	2 cut(s)	55, 97
BmgT120I	GGNCC	2 cut(s)	55, 97
BmiI	GGNNCC	3 cut(s)	6, 98, 99
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	3 cut(s)	7, 14, 30
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 284
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	2 cut(s)	381, 385
BseLI	CCNNNNNNNGG	2 cut(s)	14, 284
BseMII	CTCAG	2 cut(s)	62, 73
BseNI	ACTGG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	46
BshTI	ACCGGT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	8, 15, 31
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	14, 284
BsmAI	GTCTC	3 cut(s)	141, 235, 308
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	127, 161
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	61, 72
BspLI	GGNNCC	3 cut(s)	6, 98, 99
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	2 cut(s)	127, 161
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	48, 59, 337
BstDSI	CCRYGG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	381, 385
BstKTI	GATC	2 cut(s)	130, 164
BstMAI	GTCTC	3 cut(s)	141, 235, 308
BstMBI	GATC	2 cut(s)	127, 161
BstMCI	CGRYCG	1 cut(s)	35
BstPI	GGTNACC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	381, 385
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	55, 97
CspAI	ACCGGT	1 cut(s)	30
CviJI	RGCY	8 cut(s)	5, 39, 46, 68, 146, 273, 295, 404
CviKI_1	RGCY	8 cut(s)	5, 39, 46, 68, 146, 273, 295, 404
DdeI	CTNAG	3 cut(s)	48, 59, 337
DpnI	GATC	2 cut(s)	129, 163
DpnII	GATC	2 cut(s)	127, 161
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	55, 97
Eco57I	CTGAAG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	308
FaqI	GGGAC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	2 cut(s)	388, 392
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	3 cut(s)	8, 15, 31
HinfI	GANTC	2 cut(s)	25, 394
HpaII	CCGG	3 cut(s)	8, 15, 31
HphI	GGTGA	3 cut(s)	4, 20, 356
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	189, 398
HpyAV	CCTTC	2 cut(s)	229, 285
HpyCH4III	ACNGT	1 cut(s)	368
HpyF3I	CTNAG	3 cut(s)	48, 59, 337
KflI	GGGWCCC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 161
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	8 cut(s)	21, 28, 44, 62, 128, 230, 291, 411
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	129, 163
MboI	GATC	2 cut(s)	127, 161
MboII	GAAGA	5 cut(s)	101, 171, 209, 235, 279
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	3 cut(s)	105, 207, 426
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	57, 68, 87, 365
MseI	TTAA	2 cut(s)	327, 429
MspI	CCGG	3 cut(s)	8, 15, 31
MunI	CAATTG	1 cut(s)	207
NdeII	GATC	2 cut(s)	127, 161
NlaIV	GGNNCC	3 cut(s)	6, 98, 99
NmeAIII	GCCGAG	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	25, 394
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	10
PspN4I	GGNNCC	3 cut(s)	6, 98, 99
PspPI	GGNCC	2 cut(s)	55, 97
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	327, 429
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	127, 161
Sau96I	GGNCC	2 cut(s)	55, 97
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	3 cut(s)	60, 70, 275
SinI	GGWCC	2 cut(s)	55, 97
Sse9I	AATT	3 cut(s)	105, 207, 426
SspMI	CTAG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	23, 265
TasI	AATT	3 cut(s)	105, 207, 426
TfiI	GAWTC	2 cut(s)	25, 394
Tru1I	TTAA	2 cut(s)	327, 429
Tru9I	TTAA	2 cut(s)	327, 429
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	287, 334, 429
VpaK11BI	GGWCC	2 cut(s)	55, 97
VspI	ATTAAT	1 cut(s)	327
XbaI	TCTAGA	1 cut(s)	188
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.