Rh6AG170400

Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis. May play a role in the physiological regulation of the intracellular CoA concentration

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004879
Physical Location & Seq
Reverse (-)
27545338 .. 27546519
1182 bp
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UTR
Exon/CDS
Intron
Rh6AG170400.1

Sequence Viewer

Length: 460 bp
ATGGCTCCGGTCACCGGAAGTTCGATTCACCGGTCGGGCTCTAGGCCTCAGTTGGACCTCAGCAAAGCTGCTATTCAGGGAACTTTTGAAGAGAGGGACCCTACAATTCTGTTACCTAATCAATCTGATCACTTCTCTCATCTGGCTTTGGACATTGGAGGATCTCTCATCAAGTTGGTGTATTTTTCTAGACACGAAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGAGAGACTGGGTATTTCCAATGGTAGTCGAAGAAGCTACCCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGACTTCATTTATTCTAAACAACTTCACCGTGGAGGGATGGATGTTCGTATTTGGAATCCTGATGCCCCAACCAATGAAAATTTTGTAATTAAGGGTTCCCCTAAGGCTGCAGCCTTTGAGT

Protein Analysis

153

Amino Acids

17.16

Weight (kDa)

9.3

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fumble PF03630 47 - 124 5e-14 Fumble
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 14, 284
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 2 cut(s) 89, 235
AluBI AGCT 2 cut(s) 68, 273
AluI AGCT 2 cut(s) 68, 273
Alw26I GTCTC 2 cut(s) 235, 308
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 3 cut(s) 68, 446, 449
ApoI RAATTY 1 cut(s) 418
AseI ATTAAT 1 cut(s) 327
AsiGI ACCGGT 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 55, 97
AsuHPI GGTGA 3 cut(s) 4, 20, 356
AvaII GGWCC 2 cut(s) 55, 97
AxyI CCTNAGG 1 cut(s) 441
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 55, 433
BccI CCATC 1 cut(s) 370
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 235, 308
BfaI CTAG 2 cut(s) 42, 189
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 3 cut(s) 69, 447, 450
BlsI GCNGC 3 cut(s) 70, 448, 451
Bme18I GGWCC 2 cut(s) 55, 97
BmgT120I GGNCC 2 cut(s) 55, 97
BmiI GGNNCC 4 cut(s) 6, 98, 99, 436
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 150, 182
Bpu10I CCTNAGC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 3 cut(s) 7, 14, 30
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 284
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 249
Bse21I CCTNAGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 381, 385
BseLI CCNNNNNNNGG 2 cut(s) 14, 284
BseMII CTCAG 2 cut(s) 62, 73
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 55, 433
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 8, 15, 31
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 14, 284
BsmAI GTCTC 2 cut(s) 235, 308
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 127, 161
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 61, 72
BspLI GGNNCC 4 cut(s) 6, 98, 99, 436
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 2 cut(s) 127, 161
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 4 cut(s) 48, 59, 337, 441
BstDSI CCRYGG 1 cut(s) 367
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 2 cut(s) 381, 385
BstKTI GATC 2 cut(s) 130, 164
BstMAI GTCTC 2 cut(s) 235, 308
BstMBI GATC 2 cut(s) 127, 161
BstMCI CGRYCG 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 55, 433
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 381, 385
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 55, 97
CspAI ACCGGT 1 cut(s) 30
CviJI RGCY 9 cut(s) 5, 39, 46, 68, 146, 273, 295, 446, 452
CviKI_1 RGCY 9 cut(s) 5, 39, 46, 68, 146, 273, 295, 446, 452
DdeI CTNAG 4 cut(s) 48, 59, 337, 441
DpnI GATC 2 cut(s) 129, 163
DpnII GATC 2 cut(s) 127, 161
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 55, 97
Eco81I CCTNAGG 1 cut(s) 441
Eco91I GGTNACC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 308
FaqI GGGAC 1 cut(s) 110
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 69, 447, 450
FokI GGATG 2 cut(s) 388, 392
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 69, 447, 450
FspBI CTAG 2 cut(s) 42, 189
GluI GCNGC 3 cut(s) 69, 447, 450
HaeIII GGCC 1 cut(s) 46
HapII CCGG 3 cut(s) 8, 15, 31
HinfI GANTC 2 cut(s) 25, 394
HpaII CCGG 3 cut(s) 8, 15, 31
HphI GGTGA 3 cut(s) 4, 20, 356
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 189, 398
HpyAV CCTTC 2 cut(s) 229, 285
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 1 cut(s) 449
HpyF3I CTNAG 4 cut(s) 48, 59, 337, 441
KflI GGGWCCC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 2 cut(s) 127, 161
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 21, 28, 44, 62, 128, 230, 291, 411
Lsp1109I GCAGC 2 cut(s) 55, 433
LweI GCATC 1 cut(s) 391
MaeI CTAG 2 cut(s) 42, 189
MaeIII GTNAC 2 cut(s) 10, 111
MalI GATC 2 cut(s) 129, 163
MboI GATC 2 cut(s) 127, 161
MboII GAAGA 4 cut(s) 101, 209, 235, 279
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 4 cut(s) 105, 207, 418, 426
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 5 cut(s) 57, 68, 87, 152, 365
MseI TTAA 2 cut(s) 327, 429
MspI CCGG 3 cut(s) 8, 15, 31
MunI CAATTG 1 cut(s) 207
NdeII GATC 2 cut(s) 127, 161
NlaIV GGNNCC 4 cut(s) 6, 98, 99, 436
NmuCI GTSAC 1 cut(s) 10
PceI AGGCCT 1 cut(s) 46
PfeI GAWTC 2 cut(s) 25, 394
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 3 cut(s) 70, 448, 451
PpuMI RGGWCCY 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 10
PspN4I GGNNCC 4 cut(s) 6, 98, 99, 436
PspPI GGNCC 2 cut(s) 55, 97
PspPPI RGGWCCY 1 cut(s) 97
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 161
SaqAI TTAA 2 cut(s) 327, 429
SatI GCNGC 3 cut(s) 69, 447, 450
Sau3AI GATC 2 cut(s) 127, 161
Sau96I GGNCC 2 cut(s) 55, 97
SduI GDGCHC 1 cut(s) 41
SetI ASST 4 cut(s) 60, 70, 118, 275
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 55, 97
Sse9I AATT 4 cut(s) 105, 207, 418, 426
SseBI AGGCCT 1 cut(s) 46
SspMI CTAG 2 cut(s) 42, 189
StuI AGGCCT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 368
TaqI TCGA 2 cut(s) 23, 265
TasI AATT 4 cut(s) 105, 207, 418, 426
TfiI GAWTC 2 cut(s) 25, 394
Tru1I TTAA 2 cut(s) 327, 429
Tru9I TTAA 2 cut(s) 327, 429
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 3 cut(s) 68, 446, 449
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 287, 334, 429
VpaK11BI GGWCC 2 cut(s) 55, 97
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 1 cut(s) 418
XbaI TCTAGA 1 cut(s) 188
XspI CTAG 2 cut(s) 42, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.