Rorug03G0188200

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004879
Physical Location & Seq
Reverse (-)
16391165 .. 16391434
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0188200.1

Sequence Viewer

Length: 270 bp
ATGTTGGAGTCATTTGAAACTCAGAGGGTGAGATTTGTTCCTACATCTAGATCAGCAATAGAGAGTTTGAAGAGAGTGAGGCTTAATCAAGGTATTATCCAACAGAATCCAACATGCAGTATATGTAGGCATGAGTTTGTCAAAGCTGATGTTGATCAACTGATCCTTGCTTTGCCTTGTGCACACAATTATCATGCACATTGCATTATCCAGTGGCTGCAGATTAATCACTTGTGCCCCTTGTGTCGACACCCCTTGCCAACCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

89

Amino Acids

10.3

Weight (kDa)

8.67

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 36 - 84 3.6e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 38 - 83 4.5e-12 Ring finger domain
zf-rbx1 PF12678 38 - 83 9e-08 RING-H2 zinc finger domain
zf-C3HC4 PF00097 39 - 82 2.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 39 - 82 6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 39 - 80 2.2e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
AclWI GGATC 1 cut(s) 157
AgsI TTSAA 2 cut(s) 17, 70
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 184
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 217
AseI ATTAAT 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 40
BaeGI GKGCMC 2 cut(s) 184, 239
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 204
BclI TGATCA 1 cut(s) 154
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 153
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 211
BseSI GKGCMC 2 cut(s) 184, 239
BseXI GCAGC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 184, 239
Bsp143I GATC 3 cut(s) 50, 154, 162
BspCNI CTCAG 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 211
BssMI GATC 3 cut(s) 50, 154, 162
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 3 cut(s) 53, 157, 165
BstMBI GATC 3 cut(s) 50, 154, 162
BstNSI RCATGY 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 218
BstSLI GKGCMC 2 cut(s) 184, 239
BstV1I GCAGC 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 218
CaiI CAGNNNCTG 1 cut(s) 217
CviAII CATG 3 cut(s) 114, 131, 194
CviJI RGCY 3 cut(s) 82, 146, 217
CviKI_1 RGCY 3 cut(s) 82, 146, 217
DdeI CTNAG 1 cut(s) 21
DpnI GATC 3 cut(s) 52, 156, 164
DpnII GATC 3 cut(s) 50, 154, 162
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
FaeI CATG 3 cut(s) 117, 134, 197
FaiI YATR 5 cut(s) 115, 122, 124, 132, 195
FatI CATG 3 cut(s) 113, 130, 193
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 117, 134, 197
HincII GTYRAC 1 cut(s) 248
HindII GTYRAC 1 cut(s) 248
HinfI GANTC 2 cut(s) 8, 106
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 182, 248
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 2 cut(s) 182, 248
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 117, 182, 197, 204, 220
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 3 cut(s) 117, 134, 197
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 3 cut(s) 50, 154, 162
LpnPI CCDG 1 cut(s) 224
Lsp1109I GCAGC 1 cut(s) 204
MaeI CTAG 1 cut(s) 48
MalI GATC 3 cut(s) 52, 156, 164
MboI GATC 3 cut(s) 50, 154, 162
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 184, 239
MluCI AATT 1 cut(s) 187
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 124, 134
MnlI CCTC 2 cut(s) 18, 72
MseI TTAA 2 cut(s) 84, 225
NdeII GATC 3 cut(s) 50, 154, 162
NlaIII CATG 3 cut(s) 117, 134, 197
NspI RCATGY 1 cut(s) 117
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 219
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 225
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 217
SalI GTCGAC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 84, 225
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 3 cut(s) 50, 154, 162
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 2 cut(s) 184, 239
SetI ASST 2 cut(s) 94, 148
SfcI CTRYAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 247
TasI AATT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 84, 225
Tru9I TTAA 2 cut(s) 84, 225
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 217
TspRI CASTG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 180
VspI ATTAAT 1 cut(s) 225
XbaI TCTAGA 1 cut(s) 47
XceI RCATGY 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 247
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.