Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

29652074 .. 29654147

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTCCACTACGCCTACGGCGCCGTCGAGAAGTCGATCGAGGCCTACGTCACTCGCGCCGGCGGGCACATCATTGAGGTACCCTTGCCGTTTCCTTTGAATTCCAACTATGAGATTGTAACCGAGTTTAAGAAGGCTTTGGAGAAGGGGAAGGCTAATGGATCTCTCATCAAGTTGGTGTATTTTTCTAGACACGAAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGAGAGACTGGGTATTTCCAATGGTAGTCGAAGAAGCTACGCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGCTTCATTTATTCTAAACAACTTCACCGTGGAGGTATTCTCCTCTTGCTGTCTTTTGCCCCTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DUF89 Fumble

Protein Analysis

135

Amino Acids

15.28

Weight (kDa)

9.15

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	54 - 116	2.5e-07	Fumble

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	2 cut(s)	20, 79
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	100, 235
AluBI	AGCT	2 cut(s)	273, 341
AluI	AGCT	2 cut(s)	273, 341
Alw26I	GTCTC	2 cut(s)	235, 308
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	100
AseI	ATTAAT	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	23, 59
AsuHPI	GGTGA	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	20, 79
BbsI	GAAGAC	1 cut(s)	204
BceAI	ACGGC	3 cut(s)	8, 34, 73
BcoDI	GTCTC	2 cut(s)	235, 308
BfaI	CTAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	24
BlpI	GCTNAGC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	22, 81
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
Bpu1102I	GCTNAGC	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	20, 79
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	235, 308
BsmBI	CGTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	36, 161
Bsp1720I	GCTNAGC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	22, 81
BspPI	GGATC	1 cut(s)	169
BspT107I	GGYRCC	2 cut(s)	20, 79
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	36, 161
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	61, 65
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 59
BstKTI	GATC	2 cut(s)	39, 164
BstMAI	GTCTC	2 cut(s)	235, 308
BstMBI	GATC	2 cut(s)	36, 161
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	61, 65
CfoI	GCGC	2 cut(s)	23, 59
Cfr10I	RCCGGY	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	6 cut(s)	44, 137, 155, 273, 295, 341
CviKI_1	RGCY	6 cut(s)	44, 137, 155, 273, 295, 341
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	337
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	2 cut(s)	38, 163
DpnII	GATC	2 cut(s)	36, 161
Eco147I	AGGCCT	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	100
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	308
FaiI	YATR	1 cut(s)	111
FauI	CCCGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	2 cut(s)	22, 58
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	2 cut(s)	23, 59
Hin1I	GRCGYC	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	21, 57
HinP1I	GCGC	2 cut(s)	21, 57
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	28, 189
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	5 cut(s)	127, 139, 145, 229, 285
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	21
HspAI	GCGC	2 cut(s)	21, 57
KasI	GGCGCC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	36, 161
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	2 cut(s)	73, 230
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	49, 118
MalI	GATC	2 cut(s)	38, 163
MboI	GATC	2 cut(s)	36, 161
MboII	GAAGA	3 cut(s)	209, 235, 279
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	100, 207
Mly113I	GGCGCC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	4 cut(s)	34, 70, 364, 391
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	3 cut(s)	129, 327, 406
MspI	CCGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	20
NaeI	GCCGGC	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	2 cut(s)	36, 161
NgoMIV	GCCGGC	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	22, 81
NmuCI	GTSAC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 45
PdiI	GCCGGC	1 cut(s)	61
Ple19I	CGATCG	1 cut(s)	39
PluTI	GGCGCC	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	22, 81
PsuI	RGATCY	1 cut(s)	161
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	129, 327, 406
Sau3AI	GATC	2 cut(s)	36, 161
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	5 cut(s)	51, 81, 275, 343, 375
SfoI	GGCGCC	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	100, 207
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	63
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	27, 35, 39, 265
TasI	AATT	2 cut(s)	100, 207
Tru1I	TTAA	3 cut(s)	129, 327, 406
Tru9I	TTAA	3 cut(s)	129, 327, 406
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	287, 333
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	1 cut(s)	100
XbaI	TCTAGA	1 cut(s)	188
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.