RchiOBHm_Chr4g0390721

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004879
Physical Location & Seq
Reverse (-)
6008768 .. 6009127
360 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36368

Sequence Viewer

Length: 360 bp
ATGCTCCTTTATGCTTATGGCGCCGTCAAGAAGTCCATTGAGGTACCATTGCCGTTTCCTTTGAATTCTAATAATGAGATTGTAACCGAGATTAAGAAAGCTTTGGGAAAAGGGAAGGCGAATGGGAGGAGGGTTAGGCTAGCCGTGATTGATCATATTACTTCAACGCCTTGTGTGGTTATACATGTTAAGGAGTTGGTTAAGATTTGTAGGGAGGAGGGGGTTGATCAGGTTTTCGTCGATGCAGCTCACAGCATTGGGTGTATGGGTATTTTGGGAATTTTCTCTGTGAGAACGTCCCACAAAACTGCCAGATCAGACCTTAGCTGCCCATGTCAGTACCTTAACAGAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

119

Amino Acids

13.09

Weight (kDa)

9.08

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 2 cut(s) 20, 43
AcsI RAATTY 2 cut(s) 64, 279
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 45, 341
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 2 cut(s) 64, 165
AluBI AGCT 3 cut(s) 101, 248, 327
AluI AGCT 3 cut(s) 101, 248, 327
ApeKI GCWGC 2 cut(s) 245, 327
ApoI RAATTY 2 cut(s) 64, 279
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 23
AsuNHI GCTAGC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 20, 43
BbvI GCAGC 2 cut(s) 257, 314
BceAI ACGGC 3 cut(s) 8, 37, 128
BclI TGATCA 2 cut(s) 151, 226
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 2 cut(s) 246, 328
BlsI GCNGC 2 cut(s) 247, 329
BmiI GGNNCC 2 cut(s) 22, 45
BmsI GCATC 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 47
BseRI GAGGAG 2 cut(s) 142, 230
BseXI GCAGC 2 cut(s) 257, 314
BshNI GGYRCC 2 cut(s) 20, 43
BslFI GGGAC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 283
Bsp143I GATC 3 cut(s) 151, 226, 314
BspLI GGNNCC 2 cut(s) 22, 45
BspOI GCTAGC 1 cut(s) 143
BspT107I GGYRCC 2 cut(s) 20, 43
BsrDI GCAATG 1 cut(s) 47
BssMI GATC 3 cut(s) 151, 226, 314
BssNI GRCGYC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 154, 229, 317
BstMBI GATC 3 cut(s) 151, 226, 314
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 257, 314
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 44, 340
CviAII CATG 2 cut(s) 185, 333
CviJI RGCY 5 cut(s) 101, 139, 143, 248, 327
CviKI_1 RGCY 5 cut(s) 101, 139, 143, 248, 327
CviQI GTAC 2 cut(s) 44, 340
DdeI CTNAG 1 cut(s) 323
DinI GGCGCC 1 cut(s) 22
DpnI GATC 3 cut(s) 153, 228, 316
DpnII GATC 3 cut(s) 151, 226, 314
EcoRI GAATTC 1 cut(s) 64
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 2 cut(s) 188, 336
FaiI YATR 7 cut(s) 12, 18, 156, 182, 186, 266, 334
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 184, 332
FbaI TGATCA 2 cut(s) 151, 226
Fnu4HI GCNGC 2 cut(s) 246, 328
Fsp4HI GCNGC 2 cut(s) 246, 328
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 246, 328
HaeII RGCGCY 1 cut(s) 24
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 188, 336
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 188, 336
HspAI GCGC 1 cut(s) 21
KasI GGCGCC 1 cut(s) 20
KpnI GGTACC 1 cut(s) 47
Ksp22I TGATCA 2 cut(s) 151, 226
Kzo9I GATC 3 cut(s) 151, 226, 314
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 2 cut(s) 215, 325
Lsp1109I GCAGC 2 cut(s) 257, 314
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 153, 228, 316
MboI GATC 3 cut(s) 151, 226, 314
MluCI AATT 3 cut(s) 64, 279, 355
Mly113I GGCGCC 1 cut(s) 21
MnlI CCTC 5 cut(s) 34, 120, 123, 208, 211
MseI TTAA 4 cut(s) 93, 189, 201, 345
MwoI GCNNNNNNNGC 1 cut(s) 20
NarI GGCGCC 1 cut(s) 21
NdeII GATC 3 cut(s) 151, 226, 314
NheI GCTAGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 188, 336
NlaIV GGNNCC 2 cut(s) 22, 45
NspI RCATGY 1 cut(s) 188
PciI ACATGT 1 cut(s) 184
PkrI GCNGC 2 cut(s) 247, 329
PluTI GGCGCC 1 cut(s) 24
PscI ACATGT 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 22, 45
RsaI GTAC 2 cut(s) 45, 341
RsaNI GTAC 2 cut(s) 44, 340
SaqAI TTAA 4 cut(s) 93, 189, 201, 345
SatI GCNGC 2 cut(s) 246, 328
Sau3AI GATC 3 cut(s) 151, 226, 314
SetI ASST 8 cut(s) 45, 103, 234, 250, 299, 324, 329, 345
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 22
SgeI CNNG 9 cut(s) 40, 100, 152, 157, 183, 197, 242, 324, 345
Sse9I AATT 3 cut(s) 64, 279, 355
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 1 cut(s) 140
TaiI ACGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 240
TasI AATT 3 cut(s) 64, 279, 355
Tru1I TTAA 4 cut(s) 93, 189, 201, 345
Tru9I TTAA 4 cut(s) 93, 189, 201, 345
TseI GCWGC 2 cut(s) 245, 327
XapI RAATTY 2 cut(s) 64, 279
XceI RCATGY 1 cut(s) 188
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.