Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

51153436 .. 51153959

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTCCACTACGCCTACGGTGCCGTCAAGAAGTCGATTGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTGAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGAGTTTAAGAAGGCTTTGGACAAGGGGAAGGCTAATGGTAGGAGGGTTAGGTTAGCTGTGATTGATCATATTACTTCAATGCCGTGTGTGGTTATACCTGTTAAGGAGTTGGTTAAGATTTGTAGGGAGGAGGGAGTTGATCAGGGTTTCGTCGATGCGGCACACAGCATTGGGAAGTCGCCCAAGGGTGTGGAATTGCACCACCCGGTGGTTTCCCATGAGTATGGGAATGGATTGGCTATTGAAAGTGCTTGGATTGGGACTAGGGATTACAGCCCTCAGTTGGTTGTAAGTGTCATTTCTATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

144

Amino Acids

15.69

Weight (kDa)

7.06

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	2 cut(s)	20, 79
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	63, 281
AcsI	RAATTY	1 cut(s)	100
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	331, 406
AgsI	TTSAA	3 cut(s)	100, 201, 368
AjiI	CACGTC	1 cut(s)	70
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AoxI	GGCC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	100
Asp718I	GGTACC	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	20, 79
BceAI	ACGGC	3 cut(s)	8, 73, 190
BclI	TGATCA	2 cut(s)	187, 262
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	22, 81
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 406
Bse118I	RCCGGY	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	331, 406
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	20, 79
BsiSI	CCGG	2 cut(s)	60, 329
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	331, 406
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	187, 262
BspACI	CCGC	2 cut(s)	63, 281
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	22, 81
BspT107I	GGYRCC	2 cut(s)	20, 79
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	187, 262
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	61, 65
BstDEI	CTNAG	1 cut(s)	402
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	190, 265
BstMBI	GATC	2 cut(s)	187, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	57
BstXI	CCANNNNNNTGG	2 cut(s)	313, 347
BsuRI	GGCC	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	61, 65
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	6 cut(s)	44, 137, 155, 179, 362, 399
CviKI_1	RGCY	6 cut(s)	44, 137, 155, 179, 362, 399
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	2 cut(s)	189, 264
DpnII	GATC	2 cut(s)	187, 262
DraIII	CACNNNGTG	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	344
FaiI	YATR	5 cut(s)	192, 218, 342, 348, 428
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	2 cut(s)	187, 262
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	60, 329
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HpaII	CCGG	2 cut(s)	60, 329
Hpy188III	TCNNGA	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	127, 145
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	48, 69
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	2 cut(s)	48, 69
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	57
KpnI	GGTACC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	187, 262
Kzo9I	GATC	2 cut(s)	187, 262
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	73, 234, 251, 342
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	2 cut(s)	48, 69
MaeIII	GTNAC	2 cut(s)	49, 118
MalI	GATC	2 cut(s)	189, 264
MboI	GATC	2 cut(s)	187, 262
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	100, 317
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	34, 70, 159, 244, 247, 411
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	3 cut(s)	129, 225, 237
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	2 cut(s)	60, 329
MspR9I	CCNGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	20
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	187, 262
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	22, 81
NmuCI	GTSAC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	22, 81
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	129, 225, 237
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	187, 262
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	51, 72, 81, 176, 181, 223
SfaNI	GCATC	1 cut(s)	268
SgrAI	CRCCGGYG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	100, 317
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	63, 281
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	51, 72
TaqI	TCGA	2 cut(s)	35, 276
TasI	AATT	2 cut(s)	100, 317
TauI	GCSGC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	129, 225, 237
Tru9I	TTAA	3 cut(s)	129, 225, 237
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	100
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.