Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008164.1

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2470

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008164.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 463 bp

atgaaggagtggttcgaaacagaaggaaactgggattcagagaaattagggtttggagatgggaatggagatttggttgtggtgagtgccggagatgataagaagatatcgttgtggcataagaatgggcagagcttggggactattccggtggccgggacggacagtggtgacaacattgaggagtctatatcggcgcttagcttcagtaacaaggtttcgagatatatatgttctggtggtcaaactgagaaagacatggctccggtcaccggaagttcgattcaccggtcgggctctcggcctcagttggacctcagcaaagctgctattcagggaacttttgaagagagggaccctacaattctgttgcctaatcagtctgatcacttgtctcatctggctttggacattggaggtataactgatcaattcaattgtgcttttgttgattgtgtttttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DUF89 Fumble

Protein Analysis

154

Amino Acids

16.56

Weight (kDa)

4.58

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	155, 272
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	347, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	3 cut(s)	135, 204, 326
AluI	AGCT	3 cut(s)	135, 204, 326
Alw26I	GTCTC	1 cut(s)	399
AoxI	GGCC	2 cut(s)	153, 302
ApeKI	GCWGC	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	313, 355
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	4 cut(s)	94, 182, 262, 278
AsuII	TTCGAA	1 cut(s)	15
AvaII	GGWCC	2 cut(s)	313, 355
BanII	GRGCYC	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	53
BclI	TGATCA	2 cut(s)	385, 427
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	2 cut(s)	313, 355
BmgT120I	GGNCC	2 cut(s)	313, 355
BmiI	GGNNCC	3 cut(s)	264, 356, 357
BmrFI	CCNGG	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	157
BsaWI	WCCGGW	4 cut(s)	148, 265, 272, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 272
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	155, 272
BseMII	CTCAG	3 cut(s)	240, 320, 331
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	155, 304
BshTI	ACCGGT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	293
BsiSI	CCGG	6 cut(s)	90, 149, 156, 266, 273, 289
BslFI	GGGAC	3 cut(s)	154, 172, 368
BslI	CCNNNNNNNGG	2 cut(s)	155, 272
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	3 cut(s)	154, 172, 368
BsnI	GGCC	2 cut(s)	155, 304
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	385, 427
Bsp1720I	GCTNAGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	155, 304
BspCNI	CTCAG	3 cut(s)	241, 319, 330
BspLI	GGNNCC	3 cut(s)	264, 356, 357
BspT104I	TTCGAA	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	288
BssMI	GATC	2 cut(s)	385, 427
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	15
BstDEI	CTNAG	4 cut(s)	200, 249, 306, 317
BstEII	GGTNACC	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	388, 430
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	385, 427
BstMCI	CGRYCG	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	155, 304
BtsIMutI	CAGTG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	313, 355
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	8 cut(s)	135, 155, 204, 263, 297, 304, 326, 404
CviKI_1	RGCY	8 cut(s)	135, 155, 204, 263, 297, 304, 326, 404
DdeI	CTNAG	4 cut(s)	200, 249, 306, 317
DpnI	GATC	2 cut(s)	387, 429
DpnII	GATC	2 cut(s)	385, 427
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	313, 355
Eco57I	CTGAAG	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	268
EcoRV	GATATC	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	1 cut(s)	262
FaiI	YATR	7 cut(s)	120, 191, 228, 230, 232, 260, 422
FaqI	GGGAC	3 cut(s)	154, 172, 368
FatI	CATG	1 cut(s)	258
FbaI	TGATCA	2 cut(s)	385, 427
Fnu4HI	GCNGC	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	327
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	155, 304
HapII	CCGG	6 cut(s)	90, 149, 156, 266, 273, 289
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	3 cut(s)	35, 185, 283
HpaII	CCGG	6 cut(s)	90, 149, 156, 266, 273, 289
HphI	GGTGA	4 cut(s)	94, 182, 262, 278
Hpy188I	TCNGA	2 cut(s)	40, 385
Hpy188III	TCNNGA	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	167
HpyF3I	CTNAG	4 cut(s)	200, 249, 306, 317
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	197
KflI	GGGWCCC	1 cut(s)	355
Ksp22I	TGATCA	2 cut(s)	385, 427
Kzo9I	GATC	2 cut(s)	385, 427
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	313
MaeIII	GTNAC	3 cut(s)	170, 209, 268
MalI	GATC	2 cut(s)	387, 429
MboI	GATC	2 cut(s)	385, 427
MboII	GAAGA	2 cut(s)	115, 359
MfeI	CAATTG	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	4 cut(s)	44, 363, 431, 436
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	175, 315, 326, 345, 410
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	6 cut(s)	90, 149, 156, 266, 273, 289
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	436
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	385, 427
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	3 cut(s)	264, 356, 357
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	170, 268
NspV	TTCGAA	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	35, 283
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
PspEI	GGTNACC	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	264, 356, 357
PspPI	GGNCC	2 cut(s)	313, 355
PspPPI	RGGWCCY	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	123
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	385, 427
Sau96I	GGNCC	2 cut(s)	313, 355
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	6 cut(s)	137, 206, 219, 318, 328, 421
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	2 cut(s)	313, 355
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	44, 363, 431, 436
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	15, 221, 281
TasI	AATT	4 cut(s)	44, 363, 431, 436
TfiI	GAWTC	2 cut(s)	35, 283
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	170, 268
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	2 cut(s)	170, 268
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	313, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.