WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691 |
| rosa_multiflora | Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00106080 Rroxscaffold_4G00288390 |
| rosa_rugosa | Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200 |
| rosa_samantha | Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500 |
| rosa_wichuraiana | Rw3G020020 Rw5G015550 Rw7G035760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 153 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 32, 57, 155 |
| AjiI | CACGTC | 1 cut(s) | 43 |
| AluBI | AGCT | 1 cut(s) | 135 |
| AluI | AGCT | 1 cut(s) | 135 |
| AoxI | GGCC | 1 cut(s) | 153 |
| AsuC2I | CCSGG | 2 cut(s) | 33, 157 |
| AsuHPI | GGTGA | 2 cut(s) | 94, 182 |
| BcnI | CCSGG | 2 cut(s) | 33, 157 |
| Bme1390I | CCNGG | 2 cut(s) | 33, 157 |
| BmgBI | CACGTC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 62 |
| BmrFI | CCNGG | 2 cut(s) | 33, 157 |
| BpuMI | CCSGG | 2 cut(s) | 33, 157 |
| BsaWI | WCCGGW | 1 cut(s) | 148 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 32, 62 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 32, 57, 155 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 32, 57, 155 |
| BshFI | GGCC | 1 cut(s) | 155 |
| BsiSI | CCGG | 4 cut(s) | 33, 90, 149, 156 |
| BslFI | GGGAC | 2 cut(s) | 154, 172 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 32, 57, 155 |
| BsmFI | GGGAC | 2 cut(s) | 154, 172 |
| BsnI | GGCC | 1 cut(s) | 155 |
| BspANI | GGCC | 1 cut(s) | 155 |
| BspLI | GGNNCC | 1 cut(s) | 62 |
| Bst4CI | ACNGT | 1 cut(s) | 167 |
| BstSCI | CCNGG | 2 cut(s) | 31, 155 |
| BsuRI | GGCC | 1 cut(s) | 155 |
| BtrI | CACGTC | 1 cut(s) | 43 |
| BtsIMutI | CAGTG | 1 cut(s) | 172 |
| CviJI | RGCY | 3 cut(s) | 18, 135, 155 |
| CviKI_1 | RGCY | 3 cut(s) | 18, 135, 155 |
| EaeI | YGGCCR | 1 cut(s) | 153 |
| Eco32I | GATATC | 1 cut(s) | 108 |
| EcoRV | GATATC | 1 cut(s) | 108 |
| FaiI | YATR | 1 cut(s) | 120 |
| FaqI | GGGAC | 2 cut(s) | 154, 172 |
| HaeIII | GGCC | 1 cut(s) | 155 |
| HapII | CCGG | 4 cut(s) | 33, 90, 149, 156 |
| HincII | GTYRAC | 1 cut(s) | 46 |
| HindII | GTYRAC | 1 cut(s) | 46 |
| HpaII | CCGG | 4 cut(s) | 33, 90, 149, 156 |
| HphI | GGTGA | 2 cut(s) | 94, 182 |
| Hpy166II | GTNNAC | 1 cut(s) | 46 |
| Hpy8I | GTNNAC | 1 cut(s) | 46 |
| HpyAV | CCTTC | 1 cut(s) | 36 |
| HpyCH4III | ACNGT | 1 cut(s) | 167 |
| HpyCH4IV | ACGT | 1 cut(s) | 42 |
| HpySE526I | ACGT | 1 cut(s) | 42 |
| LpnPI | CCDG | 4 cut(s) | 46, 103, 162, 169 |
| MaeII | ACGT | 1 cut(s) | 42 |
| MaeIII | GTNAC | 2 cut(s) | 170, 197 |
| MboII | GAAGA | 1 cut(s) | 115 |
| MluCI | AATT | 2 cut(s) | 70, 186 |
| MnlI | CCTC | 1 cut(s) | 175 |
| MslI | CAYNNNNRTG | 1 cut(s) | 123 |
| MspI | CCGG | 4 cut(s) | 33, 90, 149, 156 |
| MspR9I | CCNGG | 2 cut(s) | 33, 157 |
| NciI | CCSGG | 2 cut(s) | 33, 157 |
| NlaIV | GGNNCC | 1 cut(s) | 62 |
| NmuCI | GTSAC | 1 cut(s) | 170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 1 cut(s) | 62 |
| RseI | CAYNNNNRTG | 1 cut(s) | 123 |
| ScrFI | CCNGG | 2 cut(s) | 33, 157 |
| SetI | ASST | 3 cut(s) | 45, 137, 186 |
| SgeI | CNNG | 9 cut(s) | 44, 45, 53, 67, 102, 148, 161, 168, 169 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 123 |
| Sse9I | AATT | 2 cut(s) | 70, 186 |
| StyD4I | CCNGG | 2 cut(s) | 31, 155 |
| TaaI | ACNGT | 1 cut(s) | 167 |
| TaiI | ACGT | 1 cut(s) | 45 |
| TasI | AATT | 2 cut(s) | 70, 186 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TseFI | GTSAC | 1 cut(s) | 170 |
| Tsp45I | GTSAC | 1 cut(s) | 170 |
| TspGWI | ACGGA | 2 cut(s) | 40, 176 |
| TspRI | CASTG | 1 cut(s) | 172 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 76 |