Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004033.1

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Reverse (-)

83518 .. 85505

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004033.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgagacttcgccggagtccgtcaccagccgccacctcgtcagacgtcgtcgaagatctcatagagcgtcgaaagatcacattgggtatcccatcaatgtatcgaaatgaggtggaaaagatgagaatacatgaaattgaaattgagaggtatggtctgagtgcactgtcaccggagataggccatgagcaatgcgcaacagagccaatggtggcggagaccatcaagtaccgtaaagacaccgcgaacactcttacatcccggccgcccaattacttctacttcaacgacctcaaaaacagcatcttccattcccgaaccatcatcaaggatctcatcaacgcagaccacattgataaggtctccattgtcgacaacgccaccaccgccgctgccatcatcctccagcagaccgcctggggcttctccaagagcaaatttgagaagggcgacgctgttgtcatgctccaatacttttacaacgccgttaagaagtccattgaggcctatatcactcgcgccggcgagtatgttattgaggtacccttgccgtttcctttgaattctaatgatgagattgtaaccgagtttaagaaagctttggaaaaagggaaggcgaatgggaggagagttaggctatatgtgattgatcatattacttcaatgccttgtgtggttatacatgttaaggagttggttaagatttgtagggaggaaggggttgatcaggtttttgtcgatgcggctcacatcattgggtgtatgggtatgttgggaatttggaaaaagggaaggcgaatgggaggagagttaggctatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

274

Amino Acids

31.07

Weight (kDa)

8.53

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	458
AatII	GACGTC	1 cut(s)	48
Acc16I	TGCGCA	1 cut(s)	196
Acc65I	GGTACC	1 cut(s)	541
AccB1I	GGYRCC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	245, 519
AciI	CCGC	8 cut(s)	30, 215, 243, 266, 387, 390, 414, 743
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	263
AcsI	RAATTY	3 cut(s)	437, 562, 777
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	230, 543
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	4 cut(s)	140, 286, 562, 663
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	212, 367
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	3 cut(s)	181, 263, 504
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	3 cut(s)	437, 562, 777
Asp718I	GGTACC	1 cut(s)	541
AspLEI	GCGC	2 cut(s)	197, 521
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	15, 162
BaeGI	GKGCMC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	4 cut(s)	100, 230, 329, 404
BceAI	ACGGC	2 cut(s)	470, 535
BciT130I	CCWGG	1 cut(s)	418
BciVI	GTATCC	1 cut(s)	98
BclI	TGATCA	2 cut(s)	649, 724
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	212, 367
BfuI	GTATCC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	5 cut(s)	30, 266, 390, 393, 744
BlsI	GCNGC	5 cut(s)	31, 267, 391, 394, 745
Bme1390I	CCNGG	2 cut(s)	262, 418
BmiI	GGNNCC	1 cut(s)	543
BmrFI	CCNGG	2 cut(s)	262, 418
BmsI	GCATC	2 cut(s)	312, 730
BpmI	CTGGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	212, 367
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	257, 399
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	640, 819
BseSI	GKGCMC	1 cut(s)	166
BseX3I	CGGCCG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	2 cut(s)	245, 519
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	3 cut(s)	183, 265, 506
BshNI	GGYRCC	1 cut(s)	541
BsiEI	CGRYCG	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	13, 173, 262, 522
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	212, 367
BsnI	GGCC	3 cut(s)	183, 265, 506
Bso31I	GGTCTC	2 cut(s)	212, 367
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	55, 75, 331, 649, 724
BspACI	CCGC	8 cut(s)	30, 215, 243, 266, 387, 390, 414, 743
BspANI	GGCC	3 cut(s)	183, 265, 506
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	2 cut(s)	245, 519
BspLI	GGNNCC	1 cut(s)	543
BspPI	GGATC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	541
BspTNI	GGTCTC	2 cut(s)	212, 367
BsrDI	GCAATG	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	5 cut(s)	55, 75, 331, 649, 724
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	168, 233
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	257, 399
BstFNI	CGCG	2 cut(s)	245, 519
BstHHI	GCGC	2 cut(s)	197, 521
BstKTI	GATC	5 cut(s)	58, 78, 334, 652, 727
BstMAI	GTCTC	2 cut(s)	212, 367
BstMBI	GATC	5 cut(s)	55, 75, 331, 649, 724
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	260, 416
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	2 cut(s)	245, 519
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	55, 331
BstYI	RGATCY	2 cut(s)	55, 331
BstZI	CGGCCG	1 cut(s)	263
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	183, 265, 506
BtsCI	GGATG	2 cut(s)	257, 399
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	523
CfoI	GCGC	2 cut(s)	197, 521
Cfr10I	RCCGGY	1 cut(s)	521
CseI	GACGC	2 cut(s)	56, 461
Csp6I	GTAC	2 cut(s)	229, 542
CviAII	CATG	4 cut(s)	131, 185, 463, 683
CviQI	GTAC	2 cut(s)	229, 542
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	5 cut(s)	57, 77, 333, 651, 726
DpnII	GATC	5 cut(s)	55, 75, 331, 649, 724
DrdI	GACNNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	263
EagI	CGGCCG	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	1 cut(s)	263
Eco147I	AGGCCT	1 cut(s)	506
Eco31I	GGTCTC	2 cut(s)	212, 367
Eco52I	CGGCCG	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	416
FaeI	CATG	4 cut(s)	134, 188, 466, 686
FatI	CATG	4 cut(s)	130, 184, 462, 682
FbaI	TGATCA	2 cut(s)	649, 724
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	5 cut(s)	30, 266, 390, 393, 744
FokI	GGATG	2 cut(s)	244, 386
Fsp4HI	GCNGC	5 cut(s)	30, 266, 390, 393, 744
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	2 cut(s)	196, 520
GluI	GCNGC	5 cut(s)	30, 266, 390, 393, 744
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	183, 265, 506
HapII	CCGG	4 cut(s)	13, 173, 262, 522
HgaI	GACGC	2 cut(s)	56, 461
HhaI	GCGC	2 cut(s)	197, 521
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	4 cut(s)	134, 188, 466, 686
Hin6I	GCGC	2 cut(s)	195, 519
HinP1I	GCGC	2 cut(s)	195, 519
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	4 cut(s)	13, 173, 262, 522
HphI	GGTGA	2 cut(s)	15, 162
Hpy166II	GTNNAC	2 cut(s)	164, 373
Hpy188I	TCNGA	2 cut(s)	43, 159
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	2 cut(s)	164, 373
Hpy99I	CGWCG	4 cut(s)	50, 53, 72, 455
HpyAV	CCTTC	4 cut(s)	439, 607, 710, 786
HpyCH4III	ACNGT	2 cut(s)	168, 233
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	134, 188, 466, 686
HspAI	GCGC	2 cut(s)	195, 519
KpnI	GGTACC	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Ksp22I	TGATCA	2 cut(s)	649, 724
Kzo9I	GATC	5 cut(s)	55, 75, 331, 649, 724
LmnI	GCTCC	1 cut(s)	471
LpnPI	CCDG	9 cut(s)	26, 39, 186, 275, 403, 419, 430, 535, 713
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	312, 730
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	21, 168, 580
MalI	GATC	5 cut(s)	57, 77, 333, 651, 726
MboI	GATC	5 cut(s)	55, 75, 331, 649, 724
MboII	GAAGA	2 cut(s)	65, 298
MflI	RGATCY	2 cut(s)	55, 331
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	6 cut(s)	135, 141, 271, 437, 562, 777
MlyI	GAGTC	1 cut(s)	25
MreI	CGCCGGCG	1 cut(s)	521
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	4 cut(s)	489, 591, 687, 699
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	4 cut(s)	13, 173, 262, 522
MspR9I	CCNGG	2 cut(s)	262, 418
MvaI	CCWGG	1 cut(s)	418
MvnI	CGCG	2 cut(s)	245, 519
MwoI	GCNNNNNNNGC	1 cut(s)	386
NaeI	GCCGGC	1 cut(s)	523
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	5 cut(s)	55, 75, 331, 649, 724
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	4 cut(s)	134, 188, 466, 686
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	2 cut(s)	21, 168
NsbI	TGCGCA	1 cut(s)	196
NspI	RCATGY	1 cut(s)	686
PceI	AGGCCT	1 cut(s)	506
PciI	ACATGT	1 cut(s)	682
PdiI	GCCGGC	1 cut(s)	523
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	5 cut(s)	31, 267, 391, 394, 745
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PscI	ACATGT	1 cut(s)	682
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	543
PsuI	RGATCY	2 cut(s)	55, 331
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	230, 543
RsaNI	GTAC	2 cut(s)	229, 542
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	489, 591, 687, 699
SatI	GCNGC	5 cut(s)	30, 266, 390, 393, 744
Sau3AI	GATC	5 cut(s)	55, 75, 331, 649, 724
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	262, 418
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	9 cut(s)	38, 48, 114, 152, 294, 363, 543, 601, 732
SfaNI	GCATC	2 cut(s)	312, 730
SgrAI	CRCCGGYG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	135, 141, 271, 437, 562, 777
SseBI	AGGCCT	1 cut(s)	506
SsiI	CCGC	8 cut(s)	30, 215, 243, 266, 387, 390, 414, 743
StuI	AGGCCT	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	260, 416
TaaI	ACNGT	2 cut(s)	168, 233
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	5 cut(s)	51, 70, 103, 372, 738
TasI	AATT	6 cut(s)	135, 141, 271, 437, 562, 777
TauI	GCSGC	4 cut(s)	32, 268, 392, 746
Tru1I	TTAA	4 cut(s)	489, 591, 687, 699
Tru9I	TTAA	4 cut(s)	489, 591, 687, 699
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	21, 168
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	21, 168
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	171
Tth111I	GACNNNGTC	1 cut(s)	47
VneI	GTGCAC	1 cut(s)	162
XapI	RAATTY	3 cut(s)	437, 562, 777
XceI	RCATGY	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	372
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.