Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000193.1

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Reverse (-)

44513 .. 48903

Gene Structure 4391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000193.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgcacaagaccgacatctcattcgcagtgaacttgttagctcgacatagttctgctccaacacgccgccattggattggtgtgaagacaatctttcaatacctaagaggtacgattgatatgggcctattttatccctacagagagaaaaggaatgacaaaaggatgggatcagaccaaattggctcaagtgccaccgtccaaaatgccatgacctgcaaaattgtcgccgccgccaccaagggtggccggcctcaccctcatgcacttcatcaaaacgacaatgatgttttgatgggttttgctaatgcagggtacctctctgaccctcacaaagatttggttgtggtgagtgccggagatgataagaagatatcgttgtggcataagaatgggaagagcttggggactattccggtggccgggacagacagtggtgacaacattgaggttgagttaatcaagtgttttcaattatctttacaaccgcatatggagtctgttgattttgacaaagtcttgttctttggcttcctacttacaatttgcttggcatggaatctatcactcagtttgaattccaacagtgatactaggcagaaaggcagaaaaacatacatctatttatgccattcaggtcaaactgagaaagacatggctccggtcaccggaagttcgattcaccggtcgggctctcggcctcagttagacctcagcaaagctgctattcagggaacttttgaagagagggaccatacaattctgttgcctaatcagtctgatcacttgtctcatctggctttggacattggaggatctctcatcaagttggtgtatttttctagacacgaagaccaatcaattgatgacaaaaggaagaaaactttgaaggagagactgggtatttccaatggtagtcgaagaagctacgctgttcttggtggaaggcttcattttgtgaagtttgagacgaccaagattaatgagtgcttagcttcatttattctaaacaacttcaccgtggaggtattctcctcttgctgtcttttgcccctgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

DUF89 Fumble

Protein Analysis

353

Amino Acids

39.35

Weight (kDa)

9.06

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AciI	CCGC	4 cut(s)	67, 231, 234, 488
AclWI	GGATC	2 cut(s)	178, 823
AcoI	YGGCCR	2 cut(s)	247, 420
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	2 cut(s)	112, 317
AfiI	CCNNNNNNNGG	2 cut(s)	422, 668
AgeI	ACCGGT	1 cut(s)	684
AgsI	TTSAA	5 cut(s)	98, 473, 577, 743, 889
AluBI	AGCT	5 cut(s)	41, 402, 722, 927, 995
AluI	AGCT	5 cut(s)	41, 402, 722, 927, 995
Alw26I	GTCTC	3 cut(s)	795, 889, 962
AlwI	GGATC	2 cut(s)	178, 823
AoxI	GGCC	5 cut(s)	124, 247, 251, 420, 698
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	1 cut(s)	577
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	981
AsiGI	ACCGGT	1 cut(s)	684
Asp718I	GGTACC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	124, 751
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	6 cut(s)	248, 361, 449, 658, 674, 1009
AvaII	GGWCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	695
BbsI	GAAGAC	2 cut(s)	92, 858
BbvCI	CCTCAGC	1 cut(s)	713
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	2 cut(s)	160, 289
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	795, 889, 962
BfaI	CTAG	2 cut(s)	594, 843
BfmI	CTRYAG	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	4 cut(s)	67, 231, 234, 723
BlpI	GCTNAGC	1 cut(s)	991
BlsI	GCNGC	4 cut(s)	68, 232, 235, 724
Bme1390I	CCNGG	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	2 cut(s)	124, 751
BmiI	GGNNCC	3 cut(s)	317, 660, 752
BmrFI	CCNGG	1 cut(s)	424
BmrI	ACTGGG	1 cut(s)	908
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	2 cut(s)	92, 858
BplI	GAGNNNNNCTC	4 cut(s)	804, 836, 1016, 1048
Bpu10I	CCTNAGC	1 cut(s)	713
Bpu1102I	GCTNAGC	1 cut(s)	991
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	240, 1020
BsaWI	WCCGGW	4 cut(s)	415, 661, 668, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 668
Bse118I	RCCGGY	2 cut(s)	249, 684
Bse1I	ACTGG	1 cut(s)	903
BseDI	CCNNGG	2 cut(s)	240, 1020
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	422, 668
BseMII	CTCAG	4 cut(s)	583, 636, 716, 727
BseNI	ACTGG	1 cut(s)	903
BseRI	GAGGAG	1 cut(s)	1024
BseXI	GCAGC	1 cut(s)	709
Bsh1285I	CGRYCG	1 cut(s)	689
BshFI	GGCC	5 cut(s)	126, 249, 253, 422, 700
BshNI	GGYRCC	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	684
BsiEI	CGRYCG	1 cut(s)	689
BsiSI	CCGG	7 cut(s)	250, 357, 416, 423, 662, 669, 685
BslFI	GGGAC	3 cut(s)	421, 439, 764
BslI	CCNNNNNNNGG	2 cut(s)	422, 668
BsmAI	GTCTC	3 cut(s)	795, 889, 962
BsmBI	CGTCTC	1 cut(s)	962
BsmFI	GGGAC	3 cut(s)	421, 439, 764
BsnI	GGCC	5 cut(s)	126, 249, 253, 422, 700
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	3 cut(s)	170, 781, 815
Bsp1720I	GCTNAGC	1 cut(s)	991
BspACI	CCGC	4 cut(s)	67, 231, 234, 488
BspANI	GGCC	5 cut(s)	126, 249, 253, 422, 700
BspCNI	CTCAG	4 cut(s)	582, 637, 715, 726
BspLI	GGNNCC	3 cut(s)	317, 660, 752
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	178, 823
BspQI	GCTCTTC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	315
BsrFI	RCCGGY	2 cut(s)	249, 684
BsrI	ACTGG	1 cut(s)	903
BssAI	RCCGGY	2 cut(s)	249, 684
BssECI	CCNNGG	2 cut(s)	240, 1020
BssMI	GATC	3 cut(s)	170, 781, 815
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	4 cut(s)	199, 434, 587, 1021
Bst6I	CTCTTC	2 cut(s)	392, 738
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	6 cut(s)	104, 569, 645, 702, 713, 991
BstDSI	CCRYGG	1 cut(s)	1020
BstEII	GGTNACC	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	3 cut(s)	173, 784, 818
BstMAI	GTCTC	3 cut(s)	795, 889, 962
BstMBI	GATC	3 cut(s)	170, 781, 815
BstMCI	CGRYCG	1 cut(s)	689
BstPI	GGTNACC	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	2 cut(s)	92, 858
BstX2I	RGATCY	1 cut(s)	815
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	815
BsuRI	GGCC	5 cut(s)	126, 249, 253, 422, 700
BtgI	CCRYGG	1 cut(s)	1020
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	33, 439, 592
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	251
Cfr10I	RCCGGY	2 cut(s)	249, 684
Cfr13I	GGNCC	2 cut(s)	124, 751
Csp6I	GTAC	2 cut(s)	111, 316
CspAI	ACCGGT	1 cut(s)	684
CviAII	CATG	4 cut(s)	211, 263, 555, 655
CviQI	GTAC	2 cut(s)	111, 316
DdeI	CTNAG	6 cut(s)	104, 569, 645, 702, 713, 991
DpnI	GATC	3 cut(s)	172, 783, 817
DpnII	GATC	3 cut(s)	170, 781, 815
EaeI	YGGCCR	2 cut(s)	247, 420
Eam1104I	CTCTTC	2 cut(s)	392, 738
EarI	CTCTTC	2 cut(s)	392, 738
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	695
Eco32I	GATATC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	751
Eco91I	GGTNACC	1 cut(s)	664
EcoO65I	GGTNACC	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	962
FaeI	CATG	4 cut(s)	214, 266, 558, 658
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	3 cut(s)	421, 439, 764
FatI	CATG	4 cut(s)	210, 262, 554, 654
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	67, 231, 234, 723
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	695
FseI	GGCCGGCC	1 cut(s)	253
Fsp4HI	GCNGC	4 cut(s)	67, 231, 234, 723
FspBI	CTAG	2 cut(s)	594, 843
GluI	GCNGC	4 cut(s)	67, 231, 234, 723
HaeIII	GGCC	5 cut(s)	126, 249, 253, 422, 700
HapII	CCGG	7 cut(s)	250, 357, 416, 423, 662, 669, 685
Hin1II	CATG	4 cut(s)	214, 266, 558, 658
HinfI	GANTC	3 cut(s)	497, 559, 679
HpaII	CCGG	7 cut(s)	250, 357, 416, 423, 662, 669, 685
HphI	GGTGA	6 cut(s)	248, 361, 449, 658, 674, 1009
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	175, 325, 781
Hpy188III	TCNNGA	1 cut(s)	843
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	883, 939
HpyCH4III	ACNGT	4 cut(s)	199, 434, 587, 1021
HpyCH4V	TGCA	4 cut(s)	4, 219, 266, 311
HpyF3I	CTNAG	6 cut(s)	104, 569, 645, 702, 713, 991
Hsp92II	CATG	4 cut(s)	214, 266, 558, 658
KpnI	GGTACC	1 cut(s)	319
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	170, 781, 815
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	2 cut(s)	61, 664
Lsp1109I	GCAGC	1 cut(s)	709
MaeI	CTAG	2 cut(s)	594, 843
MaeIII	GTNAC	2 cut(s)	437, 664
MalI	GATC	3 cut(s)	172, 783, 817
MboI	GATC	3 cut(s)	170, 781, 815
MboII	GAAGA	7 cut(s)	97, 382, 409, 755, 863, 889, 933
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	7 cut(s)	180, 222, 473, 543, 577, 759, 861
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	83, 606
MroNI	GCCGGC	1 cut(s)	249
MseI	TTAA	3 cut(s)	458, 981, 1060
MslI	CAYNNNNRTG	2 cut(s)	261, 390
MspI	CCGG	7 cut(s)	250, 357, 416, 423, 662, 669, 685
MspR9I	CCNGG	1 cut(s)	424
MunI	CAATTG	1 cut(s)	861
NaeI	GCCGGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	170, 781, 815
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	4 cut(s)	214, 266, 558, 658
NlaIV	GGNNCC	3 cut(s)	317, 660, 752
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	2 cut(s)	437, 664
PciSI	GCTCTTC	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	559, 679
PflFI	GACNNNGTC	1 cut(s)	515
PinAI	ACCGGT	1 cut(s)	684
PkrI	GCNGC	4 cut(s)	68, 232, 235, 724
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PshBI	ATTAAT	1 cut(s)	981
PspEI	GGTNACC	1 cut(s)	664
PspN4I	GGNNCC	3 cut(s)	317, 660, 752
PspPI	GGNCC	2 cut(s)	124, 751
PsuI	RGATCY	1 cut(s)	815
PsyI	GACNNNGTC	1 cut(s)	515
RigI	GGCCGGCC	1 cut(s)	253
RsaI	GTAC	2 cut(s)	112, 317
RsaNI	GTAC	2 cut(s)	111, 316
RseI	CAYNNNNRTG	2 cut(s)	261, 390
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	458, 981, 1060
SatI	GCNGC	4 cut(s)	67, 231, 234, 723
Sau3AI	GATC	3 cut(s)	170, 781, 815
Sau96I	GGNCC	2 cut(s)	124, 751
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	695
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	2 cut(s)	261, 390
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	7 cut(s)	180, 222, 473, 543, 577, 759, 861
SsiI	CCGC	4 cut(s)	67, 231, 234, 488
SspMI	CTAG	2 cut(s)	594, 843
StyD4I	CCNGG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	199, 434, 587, 1021
TaqI	TCGA	3 cut(s)	43, 677, 919
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	7 cut(s)	180, 222, 473, 543, 577, 759, 861
TauI	GCSGC	3 cut(s)	69, 233, 236
TfiI	GAWTC	2 cut(s)	559, 679
Tru1I	TTAA	3 cut(s)	458, 981, 1060
Tru9I	TTAA	3 cut(s)	458, 981, 1060
TscAI	CASTG	3 cut(s)	33, 439, 592
TseFI	GTSAC	2 cut(s)	437, 664
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	2 cut(s)	437, 664
TspDTI	ATGAA	3 cut(s)	260, 941, 987
TspRI	CASTG	3 cut(s)	33, 439, 592
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	751
VspI	ATTAAT	1 cut(s)	981
XapI	RAATTY	1 cut(s)	577
XbaI	TCTAGA	1 cut(s)	842
XspI	CTAG	2 cut(s)	594, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.