Rmu_sc0024925.1_g000001

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024925.1
OG0004879
Physical Location & Seq
Reverse (-)
1 .. 997
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024925.1_g000001.1.cds

Sequence Viewer

Length: 384 bp
ctgctgccggtcccgactctgccaccattcgcgatttctctctctcgatctgccaccggtcgggatttctctccccgttcggatccattttggttccgccttccagagttccaggctccagccaccgagccacctcccctttcagtctgcctgagccacctcctctgctaccaccttcaagtgaggttgagtgccaaattactaggaagactctgcatgctccactacgcctacggcgccgtcaagaagtcgattgaagcctacgtcactcgcgccggcgggcacgtcattgaggtacccttgccgtttcctttgaattctaacgatgagattgtaaccgagtttgagaaggctttggagaaggggaaggctaatggtaggagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

128

Amino Acids

14.23

Weight (kDa)

9.15

Isoelectric Point (pI)

69.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 295
AccB1I GGYRCC 2 cut(s) 236, 295
AccII CGCG 2 cut(s) 32, 273
AciI CCGC 2 cut(s) 97, 279
AclWI GGATC 2 cut(s) 77, 90
AcsI RAATTY 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 60
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 3 cut(s) 179, 257, 316
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 1 cut(s) 111
AlwI GGATC 2 cut(s) 77, 90
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 316
AsiGI ACCGGT 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 295
AspLEI GCGC 2 cut(s) 239, 275
AspS9I GGNCC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 285
BamHI GGATCC 1 cut(s) 82
BanI GGYRCC 2 cut(s) 236, 295
BbsI GAAGAC 1 cut(s) 214
BceAI ACGGC 3 cut(s) 224, 250, 289
BciT130I CCWGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 240
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 6 cut(s) 12, 84, 95, 117, 238, 297
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse118I RCCGGY 3 cut(s) 7, 56, 275
BseBI CCWGG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 32, 273
Bsh1285I CGRYCG 1 cut(s) 61
BshNI GGYRCC 2 cut(s) 236, 295
BshTI ACCGGT 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 3 cut(s) 8, 57, 276
BslI CCNNNNNNNGG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 47, 82
Bsp68I TCGCGA 1 cut(s) 32
BspACI CCGC 2 cut(s) 97, 279
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 2 cut(s) 32, 273
BspLI GGNNCC 6 cut(s) 12, 84, 95, 117, 238, 297
BspPI GGATC 2 cut(s) 77, 90
BspT107I GGYRCC 2 cut(s) 236, 295
BsrFI RCCGGY 3 cut(s) 7, 56, 275
BssAI RCCGGY 3 cut(s) 7, 56, 275
BssMI GATC 2 cut(s) 47, 82
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 218, 277, 281
BstDEI CTNAG 1 cut(s) 152
BstFNI CGCG 2 cut(s) 32, 273
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 2 cut(s) 239, 275
BstKTI GATC 2 cut(s) 50, 85
BstMBI GATC 2 cut(s) 47, 82
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 2 cut(s) 32, 273
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BtrI CACGTC 1 cut(s) 286
BtuMI TCGCGA 1 cut(s) 32
Cac8I GCNNGC 3 cut(s) 218, 277, 281
CfoI GCGC 2 cut(s) 239, 275
Cfr10I RCCGGY 3 cut(s) 7, 56, 275
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 296
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 1 cut(s) 217
CviJI RGCY 7 cut(s) 116, 122, 130, 156, 260, 353, 371
CviKI_1 RGCY 7 cut(s) 116, 122, 130, 156, 260, 353, 371
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 1 cut(s) 238
DpnI GATC 2 cut(s) 49, 84
DpnII GATC 2 cut(s) 47, 82
EciI GGCGGA 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
FaeI CATG 1 cut(s) 220
FaiI YATR 1 cut(s) 218
FatI CATG 1 cut(s) 216
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 203
GlaI GCGC 2 cut(s) 238, 274
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 240
HapII CCGG 3 cut(s) 8, 57, 276
HhaI GCGC 2 cut(s) 239, 275
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 2 cut(s) 237, 273
HinP1I GCGC 2 cut(s) 237, 273
HinfI GANTC 2 cut(s) 16, 210
HpaII CCGG 3 cut(s) 8, 57, 276
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 6 cut(s) 13, 31, 45, 62, 104, 244
HpyAV CCTTC 5 cut(s) 110, 185, 343, 355, 361
HpyCH4IV ACGT 2 cut(s) 264, 285
HpyCH4V TGCA 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 264, 285
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 2 cut(s) 237, 273
KasI GGCGCC 1 cut(s) 236
KpnI GGTACC 1 cut(s) 299
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 2 cut(s) 47, 82
LmnI GCTCC 2 cut(s) 121, 225
LpnPI CCDG 8 cut(s) 21, 70, 98, 117, 125, 132, 164, 289
MaeI CTAG 1 cut(s) 203
MaeII ACGT 2 cut(s) 264, 285
MaeIII GTNAC 2 cut(s) 265, 334
MalI GATC 2 cut(s) 49, 84
MboI GATC 2 cut(s) 47, 82
MboII GAAGA 1 cut(s) 219
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 197, 316
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 2 cut(s) 10, 204
MnlI CCTC 6 cut(s) 144, 170, 173, 177, 286, 375
MreI CGCCGGCG 1 cut(s) 275
MroNI GCCGGC 1 cut(s) 275
MspI CCGG 3 cut(s) 8, 57, 276
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 32, 273
MwoI GCNNNNNNNGC 1 cut(s) 236
NaeI GCCGGC 1 cut(s) 277
NarI GGCGCC 1 cut(s) 237
NdeII GATC 2 cut(s) 47, 82
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 6 cut(s) 12, 84, 95, 117, 238, 297
NmuCI GTSAC 1 cut(s) 265
NruI TCGCGA 1 cut(s) 32
NspI RCATGY 1 cut(s) 220
PaeI GCATGC 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 277
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 2 cut(s) 10, 204
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 2 cut(s) 10, 204
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 6 cut(s) 12, 84, 95, 117, 238, 297
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 82
RruI TCGCGA 1 cut(s) 32
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 47, 82
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 2 cut(s) 10, 204
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 285
SetI ASST 7 cut(s) 136, 162, 177, 188, 267, 288, 297
SfoI GGCGCC 1 cut(s) 238
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 1 cut(s) 10
SphI GCATGC 1 cut(s) 220
Sse9I AATT 2 cut(s) 197, 316
SsiI CCGC 2 cut(s) 97, 279
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 2 cut(s) 267, 288
TaqI TCGA 2 cut(s) 46, 251
TasI AATT 2 cut(s) 197, 316
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 220
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.