Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004879

Physical Location & Seq

Genomic Coordinates Forward (+)

18304556 .. 18305038

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCTCCAATACTTTTACGACGCCGTTAAGAAGTCCATTGAGGCCTATATCACTCGCGCCGGCGGGTATGTTTTTGAGGTACCCTTGCCGTTTCCTTTGAATTCTAATGATGAGATTGTAACCGAGTTTAAGAAAGCTTTGGAAAAAGGGAAGGCGAATGGGAGGAGAGTTAGGCTATCTGTGATTGATCATATTACTTCAATGCCTTGTGTGGTTATACCTGTTAAGGAGTTGGTTAAGATTTGTAGGGAGGAGGGGGTTGATCAGGTTTTTGTTGATACGGCTCACATCATTGGGTGTATGGGTATGTTGGAAATTTTCTCTGTGAGAAGGTCCCACAAAACTGCTAGATCAGACATCAGCTGGCCACGTCAGCACCTTCACGGAGAAAATTTACGGAATAGTGATGGAATGGATCAATTTGATGAAATTGGAGAGTGCGAGACTTTTCTGATTAAATTAGCAGTGCAGGGACTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

160

Amino Acids

18.16

Weight (kDa)

6.21

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004879)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138451 RchiOBHm_Chr4g0390721 RchiOBHm_Chr4g0425541 RchiOBHm_Chr4g0439351 RchiOBHm_Chr5g0024121 RchiOBHm_Chr5g0036691
rosa_multiflora	Rmu_co8346807.1_g000001 Rmu_sc0000193.1_g000009 Rmu_sc0000409.1_g000003 Rmu_sc0000423.1_g000035 Rmu_sc0004033.1_g000019 Rmu_sc0008164.1_g000001 Rmu_sc0010128.1_g000002 Rmu_sc0024925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106080 Rroxscaffold_4G00288390
rosa_rugosa	Rorug01G0159300.1 Rorug03G0108600 Rorug03G0188200
rosa_samantha	Rh1BG408600 Rh1CG423200 Rh2BG406900 Rh3BG273600 Rh4AG368700 Rh4CG158200 Rh4DG375300 Rh6AG170400 Rh6AG170500
rosa_wichuraiana	Rw3G020020 Rw5G015550 Rw7G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	3 cut(s)	100, 315, 391
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	100, 201
AjiI	CACGTC	1 cut(s)	371
AluBI	AGCT	2 cut(s)	137, 363
AluI	AGCT	2 cut(s)	137, 363
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	475
AoxI	GGCC	2 cut(s)	42, 365
ApoI	RAATTY	3 cut(s)	100, 315, 391
Asp718I	GGTACC	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	79
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	3 cut(s)	8, 73, 297
BclI	TGATCA	2 cut(s)	187, 262
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	333
BmgBI	CACGTC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	81, 335
BsaHI	GRCGYC	1 cut(s)	21
Bse118I	RCCGGY	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	178, 266
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	44, 367
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	44, 367
Bsp143I	GATC	4 cut(s)	187, 262, 350, 415
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	44, 367
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	81, 335
BspPI	GGATC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssMI	GATC	4 cut(s)	187, 262, 350, 415
BssNI	GRCGYC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	61, 365
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	4 cut(s)	190, 265, 353, 418
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	4 cut(s)	187, 262, 350, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	44, 367
BtrI	CACGTC	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	61, 365
CaiI	CAGNNNCTG	1 cut(s)	475
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	333
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	6 cut(s)	44, 137, 175, 284, 363, 367
CviKI_1	RGCY	6 cut(s)	44, 137, 175, 284, 363, 367
CviQI	GTAC	1 cut(s)	80
DpnI	GATC	4 cut(s)	189, 264, 352, 417
DpnII	GATC	4 cut(s)	187, 262, 350, 415
EaeI	YGGCCR	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	100
FaiI	YATR	6 cut(s)	48, 69, 192, 218, 302, 308
FaqI	GGGAC	1 cut(s)	319
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	2 cut(s)	187, 262
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	44, 367
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	135
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	355, 453
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	145, 324, 389
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	21
HspAI	GCGC	1 cut(s)	57
KpnI	GGTACC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	187, 262
Kzo9I	GATC	4 cut(s)	187, 262, 350, 415
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	5 cut(s)	73, 234, 251, 349, 455
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	4 cut(s)	189, 264, 352, 417
MboI	GATC	4 cut(s)	187, 262, 350, 415
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	6 cut(s)	100, 315, 391, 419, 429, 458
MluNI	TGGCCA	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	34, 70, 156, 244, 247
Mox20I	TGGCCA	1 cut(s)	367
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	5 cut(s)	27, 129, 225, 237, 456
Msp20I	TGGCCA	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	373
NaeI	GCCGGC	1 cut(s)	61
NdeII	GATC	4 cut(s)	187, 262, 350, 415
NgoMIV	GCCGGC	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	81, 335
PceI	AGGCCT	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	81, 335
PspPI	GGNCC	1 cut(s)	333
PspPPI	RGGWCCY	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	27, 129, 225, 237, 456
Sau3AI	GATC	4 cut(s)	187, 262, 350, 415
Sau96I	GGNCC	1 cut(s)	333
SetI	ASST	8 cut(s)	81, 139, 223, 270, 335, 365, 373, 381
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	333
Sse9I	AATT	6 cut(s)	100, 315, 391, 419, 429, 458
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	348
StuI	AGGCCT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	373
TasI	AATT	6 cut(s)	100, 315, 391, 419, 429, 458
Tru1I	TTAA	5 cut(s)	27, 129, 225, 237, 456
Tru9I	TTAA	5 cut(s)	27, 129, 225, 237, 456
TscAI	CASTG	1 cut(s)	471
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	2 cut(s)	399, 412
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	3 cut(s)	100, 315, 391
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.