Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020134.1

Orthogroup ID

OG0010678

Physical Location & Seq

Genomic Coordinates Forward (+)

3626 .. 5289

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020134.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgtcaggcgcacagagagtcagacgcaactcccgcttctcgctccgtctattctcaaaatctttatataaacacacgcaactcgcgctcccctctcttctttcatttccttcaaccctctcatcattcctccttcacacacatcaacaagaaatggagaccttcctctttacatccgaatctgtcaatgagggtcaccccgacaagctctgcgatcaagtctcggatgctattctcgatgcctgcttggaacaggacccagagagcaaagtggcatgcgagacgtgtacaaaaaccaatatggtcatggtgtttggtgaaatcacaaccaaggccaaggtagactacgagaagattgttcgagacacatgcagaggaattgggtttgtatcagcagatgtaggccttgatgctgacaagtgcaaggtccttgtcaacattgaggaacaaagccccgaaattgcgcaaggggttcacggccatttcaccaagaagcctgaggaaatcggagccggtgaccaaggccacatgtttggttatgccacagatgaaacacctgagctcatgcctttaactcatgtcctttctactaagcttggtgccaagctcactgaggtcaggaagaacaaaaccgtcccgtggttgaggcctgatggtaagacccaagtgactgttgagtacagaaatgataacggagccatggtccctcttcgggtgcacactatccttatctcaacccaacatgatgagactgtcacaaatgagcagattgctgctgatttgaaggaacatgtgatcaaacctgttgtcccagcccaatacattgatgacaaaaccatttatcacctcaacccttcgggacgttttgtcatcggaggaccccatggagatgctggccttactggtcgaaagatcattatagatacctatggtggttggggtgcacacggtggtggtgctttctcgggtaaggatcctaccaaggtggaccgaagtggagcatacattgttaggcaggcagcaaagagtgtggtggcgtctggccttgctcgccgatgcattgttcaggtttcgtacgcaatcggtgtccct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004478 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016765 GO:0022414 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046872 GO:0046914 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

364

Amino Acids

39.83

Weight (kDa)

6.7

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36880 AT2G36880
fragaria_vesca	FvH4_6g16510
malus_domestica	MD04G1091900.v1.1 MD12G1109900.v1.1
prunus_persica	Prupe.7G128500_v2.0.a1
pyrus_communis	pycom04g08660 pycom12g11080
rosa_chinensis	RchiOBHm_Chr3g0470421
rosa_laevigata	RLG00000024269
rosa_multiflora	Rmu_sc0002383.1_g000009 Rmu_sc0020134.1_g000003
rosa_roxburghii	Rroxscaffold_6G00410830
rosa_rugosa	Rorug03G0108600 Rorug03G0108700
rosa_samantha	Rh3AG159100 Rh3BG183600 Rh3CG174100 Rh3DG191200
rosa_wichuraiana	Rw3G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	86
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	2 cut(s)	968, 981
AcoI	YGGCCR	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	1037
AdeI	CACNNNGTG	1 cut(s)	950
AfaI	GTAC	3 cut(s)	289, 680, 1076
AfiI	CCNNNNNNNGG	2 cut(s)	639, 712
AflIII	ACRYGT	3 cut(s)	284, 528, 790
AgsI	TTSAA	2 cut(s)	114, 784
AhdI	GACNNNNNGTC	1 cut(s)	866
AjiI	CACGTC	1 cut(s)	285
AleI	CACNNNNGTG	1 cut(s)	951
AluBI	AGCT	4 cut(s)	208, 562, 595, 607
AluI	AGCT	4 cut(s)	208, 562, 595, 607
Alw21I	GWGCWC	3 cut(s)	564, 720, 946
Alw26I	GTCTC	5 cut(s)	152, 226, 275, 357, 743
Alw44I	GTGCAC	2 cut(s)	716, 942
AlwI	GGATC	2 cut(s)	968, 981
Ama87I	CYCGRG	1 cut(s)	964
AoxI	GGCC	7 cut(s)	333, 403, 478, 523, 647, 895, 1042
ApaLI	GTGCAC	2 cut(s)	716, 942
ApeKI	GCWGC	2 cut(s)	773, 1019
ArsI	GACNNNNNNTTYG	2 cut(s)	792, 824
AspLEI	GCGC	3 cut(s)	11, 88, 466
AspS9I	GGNCC	5 cut(s)	256, 427, 703, 878, 988
AsuHPI	GGTGA	5 cut(s)	188, 329, 478, 527, 836
AvaI	CYCGRG	1 cut(s)	964
AvaII	GGWCC	5 cut(s)	256, 427, 703, 878, 988
AxyI	CCTNAGG	1 cut(s)	498
BaeGI	GKGCMC	2 cut(s)	720, 946
BamHI	GGATCC	1 cut(s)	973
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	3 cut(s)	564, 720, 946
BbvI	GCAGC	2 cut(s)	760, 1031
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BclI	TGATCA	1 cut(s)	795
BcoDI	GTCTC	5 cut(s)	152, 226, 275, 357, 743
BisI	GCNGC	2 cut(s)	774, 1020
BlsI	GCNGC	2 cut(s)	775, 1021
Bme18I	GGWCC	5 cut(s)	256, 427, 703, 878, 988
BmeRI	GACNNNNNGTC	1 cut(s)	866
BmeT110I	CYCGRG	1 cut(s)	964
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	5 cut(s)	256, 427, 703, 878, 988
BmiI	GGNNCC	7 cut(s)	258, 511, 601, 697, 705, 880, 975
BmsI	GCATC	5 cut(s)	217, 229, 400, 880, 1046
Bpu10I	CCTNAGC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	1037
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	7 cut(s)	330, 336, 520, 638, 699, 883, 981
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 687, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	639, 712
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	907
Bse21I	CCTNAGG	1 cut(s)	498
BseDI	CCNNGG	7 cut(s)	330, 336, 520, 638, 699, 883, 981
BseGI	GGATG	2 cut(s)	173, 232
BseLI	CCNNNNNNNGG	2 cut(s)	639, 712
BseMII	CTCAG	3 cut(s)	489, 549, 603
BseNI	ACTGG	1 cut(s)	907
BseSI	GKGCMC	2 cut(s)	720, 946
BseXI	GCAGC	2 cut(s)	760, 1031
BseYI	CCCAGC	1 cut(s)	811
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	7 cut(s)	335, 405, 480, 525, 649, 897, 1044
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	3 cut(s)	564, 720, 946
BsiHKCI	CYCGRG	1 cut(s)	964
BsiSI	CCGG	1 cut(s)	513
BsiWI	CGTACG	1 cut(s)	1074
BslFI	GGGAC	5 cut(s)	620, 689, 794, 873, 1073
BslI	CCNNNNNNNGG	2 cut(s)	639, 712
BsmAI	GTCTC	5 cut(s)	152, 226, 275, 357, 743
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	5 cut(s)	620, 689, 794, 873, 1073
BsnI	GGCC	7 cut(s)	335, 405, 480, 525, 649, 897, 1044
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	964
Bsp1286I	GDGCHC	3 cut(s)	564, 720, 946
Bsp1407I	TGTACA	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	214, 795, 912, 973
Bsp19I	CCATGG	2 cut(s)	699, 883
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	7 cut(s)	335, 405, 480, 525, 649, 897, 1044
BspCNI	CTCAG	3 cut(s)	490, 550, 604
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	7 cut(s)	258, 511, 601, 697, 705, 880, 975
BspPI	GGATC	2 cut(s)	968, 981
BspT107I	GGYRCC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	907
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	7 cut(s)	330, 336, 520, 638, 699, 883, 981
BssMI	GATC	4 cut(s)	214, 795, 912, 973
BssNI	GRCGYC	1 cut(s)	1037
BssT1I	CCWWGG	6 cut(s)	330, 336, 520, 699, 883, 981
Bst4CI	ACNGT	4 cut(s)	634, 673, 754, 950
Bst6I	CTCTTC	2 cut(s)	102, 714
BstACI	GRCGYC	1 cut(s)	1037
BstAUI	TGTACA	1 cut(s)	287
BstC8I	GCNNGC	5 cut(s)	244, 277, 895, 1017, 1051
BstDEI	CTNAG	4 cut(s)	498, 558, 591, 612
BstDSI	CCRYGG	3 cut(s)	638, 699, 883
BstEII	GGTNACC	2 cut(s)	194, 515
BstF5I	GGATG	2 cut(s)	173, 232
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	11, 88, 466
BstKTI	GATC	4 cut(s)	217, 798, 915, 976
BstMAI	GTCTC	5 cut(s)	152, 226, 275, 357, 743
BstMBI	GATC	4 cut(s)	214, 795, 912, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 85, 1050
BstNSI	RCATGY	4 cut(s)	279, 372, 532, 794
BstPI	GGTNACC	2 cut(s)	194, 515
BstSLI	GKGCMC	2 cut(s)	720, 946
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	760, 1031
BstX2I	RGATCY	1 cut(s)	973
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	973
Bsu36I	CCTNAGG	1 cut(s)	498
BsuRI	GGCC	7 cut(s)	335, 405, 480, 525, 649, 897, 1044
BtgI	CCRYGG	3 cut(s)	638, 699, 883
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	173, 232
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	5 cut(s)	244, 277, 895, 1017, 1051
CfoI	GCGC	3 cut(s)	11, 88, 466
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	5 cut(s)	256, 427, 703, 878, 988
CseI	GACGC	2 cut(s)	33, 1026
Csp6I	GTAC	3 cut(s)	288, 679, 1075
CspCI	CAANNNNNGTGG	2 cut(s)	1011, 1046
CviQI	GTAC	3 cut(s)	288, 679, 1075
DdeI	CTNAG	4 cut(s)	498, 558, 591, 612
DpnI	GATC	4 cut(s)	216, 797, 914, 975
DpnII	GATC	4 cut(s)	214, 795, 912, 973
DraIII	CACNNNGTG	1 cut(s)	950
DriI	GACNNNNNGTC	1 cut(s)	866
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	102, 714
Eam1105I	GACNNNNNGTC	1 cut(s)	866
EarI	CTCTTC	2 cut(s)	102, 714
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	6 cut(s)	330, 336, 520, 699, 883, 981
Eco147I	AGGCCT	2 cut(s)	405, 649
Eco24I	GRGCYC	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	5 cut(s)	256, 427, 703, 878, 988
Eco53kI	GAGCTC	1 cut(s)	562
Eco81I	CCTNAGG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	964
Eco91I	GGTNACC	2 cut(s)	194, 515
EcoICRI	GAGCTC	1 cut(s)	562
EcoO109I	RGGNCCY	3 cut(s)	256, 427, 878
EcoO65I	GGTNACC	2 cut(s)	194, 515
EcoT14I	CCWWGG	6 cut(s)	330, 336, 520, 699, 883, 981
EcoT22I	ATGCAT	1 cut(s)	1061
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	6 cut(s)	330, 336, 520, 699, 883, 981
Esp3I	CGTCTC	1 cut(s)	275
FaqI	GGGAC	5 cut(s)	620, 689, 794, 873, 1073
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	795
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	774, 1020
FokI	GGATG	2 cut(s)	160, 239
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	2 cut(s)	774, 1020
FspI	TGCGCA	1 cut(s)	465
GlaI	GCGC	3 cut(s)	10, 87, 465
GluI	GCNGC	2 cut(s)	774, 1020
GsaI	CCCAGC	1 cut(s)	815
HaeIII	GGCC	7 cut(s)	335, 405, 480, 525, 649, 897, 1044
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	2 cut(s)	33, 1026
HhaI	GCGC	3 cut(s)	11, 88, 466
Hin1I	GRCGYC	1 cut(s)	1037
Hin6I	GCGC	3 cut(s)	9, 86, 464
HinP1I	GCGC	3 cut(s)	9, 86, 464
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	2 cut(s)	18, 179
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	5 cut(s)	188, 329, 478, 527, 836
Hpy166II	GTNNAC	7 cut(s)	288, 343, 436, 475, 718, 944, 988
Hpy188I	TCNGA	5 cut(s)	23, 178, 226, 509, 875
Hpy188III	TCNNGA	4 cut(s)	236, 362, 619, 858
Hpy8I	GTNNAC	7 cut(s)	288, 343, 436, 475, 718, 944, 988
HpyAV	CCTTC	5 cut(s)	120, 143, 172, 778, 864
HpyCH4III	ACNGT	4 cut(s)	634, 673, 754, 950
HpyCH4IV	ACGT	2 cut(s)	284, 862
HpyCH4V	TGCA	5 cut(s)	372, 423, 718, 944, 1059
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 85, 1050
HpyF3I	CTNAG	4 cut(s)	498, 558, 591, 612
HpySE526I	ACGT	2 cut(s)	284, 862
Hsp92I	GRCGYC	1 cut(s)	1037
HspAI	GCGC	3 cut(s)	9, 86, 464
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	4 cut(s)	214, 795, 912, 973
LmnI	GCTCC	5 cut(s)	48, 93, 509, 695, 998
Lsp1109I	GCAGC	2 cut(s)	760, 1031
LweI	GCATC	5 cut(s)	217, 229, 400, 880, 1046
MaeII	ACGT	2 cut(s)	284, 862
MaeIII	GTNAC	4 cut(s)	194, 515, 667, 754
MalI	GATC	4 cut(s)	216, 797, 914, 975
MboI	GATC	4 cut(s)	214, 795, 912, 973
MboII	GAAGA	4 cut(s)	89, 364, 634, 701
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	3 cut(s)	564, 720, 946
MluCI	AATT	2 cut(s)	378, 459
MlyI	GAGTC	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	1061
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	2 cut(s)	888, 951
MspI	CCGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	33, 85, 1050
NcoI	CCATGG	2 cut(s)	699, 883
NdeII	GATC	4 cut(s)	214, 795, 912, 973
NlaIV	GGNNCC	7 cut(s)	258, 511, 601, 697, 705, 880, 975
NmuCI	GTSAC	4 cut(s)	194, 515, 667, 754
NsbI	TGCGCA	1 cut(s)	465
NsiI	ATGCAT	1 cut(s)	1061
NspI	RCATGY	4 cut(s)	279, 372, 532, 794
OliI	CACNNNNGTG	1 cut(s)	951
PaeI	GCATGC	1 cut(s)	279
PceI	AGGCCT	2 cut(s)	405, 649
PciI	ACATGT	2 cut(s)	528, 790
PfeI	GAWTC	1 cut(s)	179
Pfl23II	CGTACG	1 cut(s)	1074
PkrI	GCNGC	2 cut(s)	775, 1021
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	3 cut(s)	256, 427, 878
PscI	ACATGT	2 cut(s)	528, 790
Psp124BI	GAGCTC	1 cut(s)	564
Psp5II	RGGWCCY	3 cut(s)	256, 427, 878
PspEI	GGTNACC	2 cut(s)	194, 515
PspFI	CCCAGC	1 cut(s)	811
PspLI	CGTACG	1 cut(s)	1074
PspN4I	GGNNCC	7 cut(s)	258, 511, 601, 697, 705, 880, 975
PspPI	GGNCC	5 cut(s)	256, 427, 703, 878, 988
PspPPI	RGGWCCY	3 cut(s)	256, 427, 878
PsuI	RGATCY	1 cut(s)	973
RsaI	GTAC	3 cut(s)	289, 680, 1076
RsaNI	GTAC	3 cut(s)	288, 679, 1075
RseI	CAYNNNNRTG	2 cut(s)	888, 951
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	2 cut(s)	774, 1020
Sau3AI	GATC	4 cut(s)	214, 795, 912, 973
Sau96I	GGNCC	5 cut(s)	256, 427, 703, 878, 988
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	3 cut(s)	564, 720, 946
SfaNI	GCATC	5 cut(s)	217, 229, 400, 880, 1046
SinI	GGWCC	5 cut(s)	256, 427, 703, 878, 988
SmiMI	CAYNNNNRTG	2 cut(s)	888, 951
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	378, 459
SseBI	AGGCCT	2 cut(s)	405, 649
SsiI	CCGC	1 cut(s)	34
SstI	GAGCTC	1 cut(s)	564
StuI	AGGCCT	2 cut(s)	405, 649
StyI	CCWWGG	6 cut(s)	330, 336, 520, 699, 883, 981
TaaI	ACNGT	4 cut(s)	634, 673, 754, 950
TaiI	ACGT	2 cut(s)	287, 865
TaqI	TCGA	3 cut(s)	237, 361, 907
TaqII	GACCGA	1 cut(s)	1005
TasI	AATT	2 cut(s)	378, 459
TatI	WGTACW	2 cut(s)	287, 678
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	4 cut(s)	194, 515, 667, 754
TseI	GCWGC	2 cut(s)	773, 1019
Tsp45I	GTSAC	4 cut(s)	194, 515, 667, 754
TspDTI	ATGAA	2 cut(s)	93, 564
TspGWI	ACGGA	2 cut(s)	35, 708
TspRI	CASTG	1 cut(s)	616
VneI	GTGCAC	2 cut(s)	716, 942
VpaK11BI	GGWCC	5 cut(s)	256, 427, 703, 878, 988
XceI	RCATGY	4 cut(s)	279, 372, 532, 794
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 890
XmiI	GTMKAC	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.