FvH4_6g18440

zpr3 zpr3 (little zipper 3)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
12201435 .. 12203087
1653 bp
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UTR
Exon/CDS
Intron
FvH4_6g18440.t4

Sequence Viewer

Length: 249 bp
ATGGAAAGGCTAAACTCAAAGCTGTACTTGCAGAATGTGTACATAATGAAAGAGAATGAGAGGCTGAGGAAGAAGGCACAGCTTCTGAACCAAGAGAATCAGGCCCTTCTTTCAGAGCTGAAGCAGAAGCTTTCAAAGCCAAACAAAGCAAATGGAGCTTCAAACACTGTGCCTGATCTGAATCTCAGCCTGAGCTCCACCACCAACAACAACAACTCGAACAATTATCCTTCCAGTTCCAGCAACTGA

Protein Analysis

83

Amino Acids

9.25

Weight (kDa)

9.75

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012505)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 26, 41
AgsI TTSAA 2 cut(s) 135, 162
AluBI AGCT 6 cut(s) 22, 82, 118, 130, 158, 195
AluI AGCT 6 cut(s) 22, 82, 118, 130, 158, 195
Alw21I GWGCWC 1 cut(s) 197
AlwNI CAGNNNCTG 2 cut(s) 85, 246
AoxI GGCC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 103
Bpu10I CCTNAGC 2 cut(s) 65, 191
BsaBI GATNNNNATC 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 3 cut(s) 56, 182, 199
BseNI ACTGG 1 cut(s) 234
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 197
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 3 cut(s) 57, 183, 198
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 234
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 65, 185, 191
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 28, 136, 155
BsuRI GGCC 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 165
CaiI CAGNNNCTG 2 cut(s) 85, 246
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 25, 40
CviQI GTAC 2 cut(s) 25, 40
DdeI CTNAG 3 cut(s) 65, 185, 191
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 197
FaiI YATR 1 cut(s) 44
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FriOI GRGCYC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 97, 181
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 87, 115, 180
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 3 cut(s) 67, 116, 240
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 136, 155
HpyF3I CTNAG 3 cut(s) 65, 185, 191
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 155, 200
LpnPI CCDG 3 cut(s) 86, 186, 203
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 223
MnlI CCTC 2 cut(s) 54, 60
MwoI GCNNNNNNNGC 3 cut(s) 28, 136, 155
NdeII GATC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 97, 181
Psp124BI GAGCTC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 103
PstNI CAGNNNCTG 2 cut(s) 85, 246
RsaI GTAC 2 cut(s) 26, 41
RsaNI GTAC 2 cut(s) 25, 40
SacI GAGCTC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 197
SetI ASST 6 cut(s) 24, 84, 120, 132, 160, 197
SgeI CNNG 6 cut(s) 40, 104, 113, 185, 202, 229
Sse9I AATT 1 cut(s) 223
SstI GAGCTC 1 cut(s) 197
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 218
TasI AATT 1 cut(s) 223
TatI WGTACW 2 cut(s) 24, 39
TfiI GAWTC 2 cut(s) 97, 181
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.