zpr3 zpr3 (little zipper 3)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52770 |
| fragaria_vesca | FvH4_6g18440 FvH4_6g18440 FvH4_6g18440 FvH4_6g18440 |
| malus_domestica | MD12G1023500.v1.1 MD14G1020700.v1.1 |
| prunus_persica | Prupe.2G079600_v2.0.a1 Prupe.7G113000_v2.0.a1 |
| pyrus_communis | pycom12g02190 pycom14g02020 |
| rosa_chinensis | RchiOBHm_Chr3g0472971 |
| rosa_laevigata | RLG00000024041 |
| rosa_multiflora | Rmu_sc0002332.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00408440 |
| rosa_rugosa | Rorug03G0130200 |
| rosa_samantha | Rh3BG208400 Rh3DG167600 |
| rosa_wichuraiana | Rw3G016110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 32 |
| AcuI | CTGAAG | 1 cut(s) | 302 |
| AfaI | GTAC | 2 cut(s) | 188, 203 |
| AgsI | TTSAA | 5 cut(s) | 30, 38, 64, 297, 324 |
| AluBI | AGCT | 6 cut(s) | 41, 184, 244, 280, 292, 357 |
| AluI | AGCT | 6 cut(s) | 41, 184, 244, 280, 292, 357 |
| Alw21I | GWGCWC | 1 cut(s) | 359 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 247, 405 |
| AoxI | GGCC | 1 cut(s) | 264 |
| ApoI | RAATTY | 1 cut(s) | 32 |
| AspS9I | GGNCC | 1 cut(s) | 265 |
| BanII | GRGCYC | 1 cut(s) | 359 |
| Bbv12I | GWGCWC | 1 cut(s) | 359 |
| BbvCI | CCTCAGC | 1 cut(s) | 227 |
| BclI | TGATCA | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 1 cut(s) | 265 |
| Bpu10I | CCTNAGC | 2 cut(s) | 227, 353 |
| BsaBI | GATNNNNATC | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 1 cut(s) | 143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 341, 371 |
| Bse1I | ACTGG | 1 cut(s) | 393 |
| Bse3DI | GCAATG | 1 cut(s) | 168 |
| Bse8I | GATNNNNATC | 1 cut(s) | 342 |
| BseDI | CCNNGG | 1 cut(s) | 143 |
| BseGI | GGATG | 1 cut(s) | 385 |
| BseJI | GATNNNNATC | 1 cut(s) | 342 |
| BseMI | GCAATG | 1 cut(s) | 168 |
| BseMII | CTCAG | 3 cut(s) | 218, 267, 344 |
| BseNI | ACTGG | 1 cut(s) | 393 |
| BshFI | GGCC | 1 cut(s) | 266 |
| BsiHKAI | GWGCWC | 1 cut(s) | 359 |
| BsnI | GGCC | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 1 cut(s) | 359 |
| Bsp1407I | TGTACA | 1 cut(s) | 201 |
| Bsp143I | GATC | 2 cut(s) | 46, 337 |
| BspANI | GGCC | 1 cut(s) | 266 |
| BspCNI | CTCAG | 3 cut(s) | 219, 268, 345 |
| BsrDI | GCAATG | 1 cut(s) | 168 |
| BsrGI | TGTACA | 1 cut(s) | 201 |
| BsrI | ACTGG | 1 cut(s) | 393 |
| BssECI | CCNNGG | 1 cut(s) | 143 |
| BssMI | GATC | 2 cut(s) | 46, 337 |
| BssT1I | CCWWGG | 1 cut(s) | 143 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| BstAUI | TGTACA | 1 cut(s) | 201 |
| BstC8I | GCNNGC | 1 cut(s) | 113 |
| BstDEI | CTNAG | 3 cut(s) | 227, 276, 353 |
| BstF5I | GGATG | 1 cut(s) | 385 |
| BstKTI | GATC | 2 cut(s) | 49, 340 |
| BstMBI | GATC | 2 cut(s) | 46, 337 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 190, 298, 317 |
| BsuRI | GGCC | 1 cut(s) | 266 |
| BtsCI | GGATG | 1 cut(s) | 385 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| Cac8I | GCNNGC | 1 cut(s) | 113 |
| CaiI | CAGNNNCTG | 2 cut(s) | 247, 405 |
| Cfr13I | GGNCC | 1 cut(s) | 265 |
| Csp6I | GTAC | 2 cut(s) | 187, 202 |
| CviQI | GTAC | 2 cut(s) | 187, 202 |
| DdeI | CTNAG | 3 cut(s) | 227, 276, 353 |
| DpnI | GATC | 2 cut(s) | 48, 339 |
| DpnII | GATC | 2 cut(s) | 46, 337 |
| Ecl136II | GAGCTC | 1 cut(s) | 357 |
| Eco130I | CCWWGG | 1 cut(s) | 143 |
| Eco24I | GRGCYC | 1 cut(s) | 359 |
| Eco53kI | GAGCTC | 1 cut(s) | 357 |
| Eco57I | CTGAAG | 1 cut(s) | 302 |
| EcoICRI | GAGCTC | 1 cut(s) | 357 |
| EcoO109I | RGGNCCY | 1 cut(s) | 265 |
| EcoT14I | CCWWGG | 1 cut(s) | 143 |
| EcoT38I | GRGCYC | 1 cut(s) | 359 |
| ErhI | CCWWGG | 1 cut(s) | 143 |
| FaiI | YATR | 4 cut(s) | 51, 80, 86, 206 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 173, 205 |
| FbaI | TGATCA | 1 cut(s) | 46 |
| FokI | GGATG | 1 cut(s) | 372 |
| FriOI | GRGCYC | 1 cut(s) | 359 |
| HaeIII | GGCC | 1 cut(s) | 266 |
| HindIII | AAGCTT | 2 cut(s) | 39, 290 |
| HinfI | GANTC | 2 cut(s) | 259, 343 |
| Hpy166II | GTNNAC | 1 cut(s) | 202 |
| Hpy188I | TCNGA | 3 cut(s) | 249, 277, 342 |
| Hpy8I | GTNNAC | 1 cut(s) | 202 |
| HpyAV | CCTTC | 4 cut(s) | 64, 229, 278, 399 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 1 cut(s) | 193 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 190, 298, 317 |
| HpyF3I | CTNAG | 3 cut(s) | 227, 276, 353 |
| Ksp22I | TGATCA | 1 cut(s) | 46 |
| Kzo9I | GATC | 2 cut(s) | 46, 337 |
| LmnI | GCTCC | 1 cut(s) | 362 |
| LpnPI | CCDG | 3 cut(s) | 248, 348, 365 |
| MalI | GATC | 2 cut(s) | 48, 339 |
| MboI | GATC | 2 cut(s) | 46, 337 |
| MboII | GAAGA | 3 cut(s) | 49, 52, 244 |
| MhlI | GDGCHC | 1 cut(s) | 359 |
| MluCI | AATT | 2 cut(s) | 32, 120 |
| MnlI | CCTC | 2 cut(s) | 216, 222 |
| MseI | TTAA | 2 cut(s) | 93, 348 |
| MslI | CAYNNNNRTG | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 190, 298, 317 |
| NdeII | GATC | 2 cut(s) | 46, 337 |
| PfeI | GAWTC | 2 cut(s) | 259, 343 |
| Psp124BI | GAGCTC | 1 cut(s) | 359 |
| PspPI | GGNCC | 1 cut(s) | 265 |
| PstNI | CAGNNNCTG | 2 cut(s) | 247, 405 |
| RsaI | GTAC | 2 cut(s) | 188, 203 |
| RsaNI | GTAC | 2 cut(s) | 187, 202 |
| RseI | CAYNNNNRTG | 1 cut(s) | 161 |
| SacI | GAGCTC | 1 cut(s) | 359 |
| SaqAI | TTAA | 2 cut(s) | 93, 348 |
| Sau3AI | GATC | 2 cut(s) | 46, 337 |
| Sau96I | GGNCC | 1 cut(s) | 265 |
| SduI | GDGCHC | 1 cut(s) | 359 |
| SetI | ASST | 9 cut(s) | 43, 56, 78, 186, 246, 282, 294, 354, 359 |
| SgeI | CNNG | 8 cut(s) | 124, 156, 190, 202, 266, 275, 347, 364 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 161 |
| Sse9I | AATT | 2 cut(s) | 32, 120 |
| SstI | GAGCTC | 1 cut(s) | 359 |
| StyI | CCWWGG | 1 cut(s) | 143 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TaqI | TCGA | 1 cut(s) | 179 |
| TasI | AATT | 2 cut(s) | 32, 120 |
| TatI | WGTACW | 2 cut(s) | 186, 201 |
| TfiI | GAWTC | 2 cut(s) | 259, 343 |
| Tru1I | TTAA | 2 cut(s) | 93, 348 |
| Tru9I | TTAA | 2 cut(s) | 93, 348 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 334 |
| XapI | RAATTY | 1 cut(s) | 32 |