Rh3BG208400

zpr3 zpr3 (little zipper 3)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
18757058 .. 18758373
1316 bp
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UTR
Exon/CDS
Intron
Rh3BG208400.1

Sequence Viewer

Length: 366 bp
ATGAAGAAGAAGCTTTCTTTGATTTTGGCCTATAAATTAAGACCCTCTTTGTTCCTTTTGTCCCTCACTTCTTCACCACACACAAGAAAGCTGAAAAACCCAAGGCTTTGTTTCACAGCAATGGAAAGGCTAAACTCGAAGCTGTACTTGCAGAATGTGTACATAATGAAAGAGAATGAGAGGCTGAGGAAGAAGGCACAGCTTCTGAACCAAGAGAATCAGGCCCTTCTTTCTGAGCTGAAGCAGAAGCTTTCAAAGCCAAACAAAGCCAATGGTGCTTCAAACACTGTGCCTGATCTGAATCTTAACCTGAGCTCCACCAACAACAACAACTCAAACAATCATCCTTCCAGTTCCAGCAACTGA

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

10.37

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012505)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 2 cut(s) 146, 161
AgsI TTSAA 2 cut(s) 255, 282
AluBI AGCT 7 cut(s) 13, 91, 142, 202, 238, 250, 315
AluI AGCT 7 cut(s) 13, 91, 142, 202, 238, 250, 315
Alw21I GWGCWC 1 cut(s) 317
AlwNI CAGNNNCTG 2 cut(s) 205, 363
AoxI GGCC 2 cut(s) 27, 222
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 66
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 223
Bpu10I CCTNAGC 2 cut(s) 185, 311
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 300
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 3 cut(s) 176, 225, 302
BseNI ACTGG 1 cut(s) 351
BshFI GGCC 2 cut(s) 29, 224
BsiHKAI GWGCWC 1 cut(s) 317
BslFI GGGAC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 29, 224
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 295
BspANI GGCC 2 cut(s) 29, 224
BspCNI CTCAG 3 cut(s) 177, 226, 303
BsrDI GCAATG 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 289
BstAUI TGTACA 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 185, 234, 311
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 3 cut(s) 148, 256, 275
BsuRI GGCC 2 cut(s) 29, 224
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 285
CaiI CAGNNNCTG 2 cut(s) 205, 363
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 145, 160
CviQI GTAC 2 cut(s) 145, 160
DdeI CTNAG 3 cut(s) 185, 234, 311
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 101
FaiI YATR 2 cut(s) 33, 164
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 131, 163
FaqI GGGAC 1 cut(s) 46
FokI GGATG 1 cut(s) 330
FriOI GRGCYC 1 cut(s) 317
HaeIII GGCC 2 cut(s) 29, 224
HindIII AAGCTT 2 cut(s) 11, 248
HinfI GANTC 2 cut(s) 217, 301
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 207, 235, 300
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 187, 236, 357
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 256, 275
HpyF3I CTNAG 3 cut(s) 185, 234, 311
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 3 cut(s) 206, 306, 323
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 4 cut(s) 16, 19, 63, 202
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 1 cut(s) 35
MnlI CCTC 4 cut(s) 55, 74, 174, 180
MseI TTAA 2 cut(s) 38, 306
MslI CAYNNNNRTG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 148, 256, 275
NdeII GATC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 217, 301
Psp124BI GAGCTC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 223
PstNI CAGNNNCTG 2 cut(s) 205, 363
RsaI GTAC 2 cut(s) 146, 161
RsaNI GTAC 2 cut(s) 145, 160
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 38, 306
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 317
SetI ASST 8 cut(s) 15, 93, 144, 204, 240, 252, 312, 317
SgeI CNNG 8 cut(s) 96, 114, 148, 160, 224, 233, 305, 322
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 1 cut(s) 35
SstI GAGCTC 1 cut(s) 317
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 35
TatI WGTACW 2 cut(s) 144, 159
TfiI GAWTC 2 cut(s) 217, 301
Tru1I TTAA 2 cut(s) 38, 306
Tru9I TTAA 2 cut(s) 38, 306
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 17, 182
TspRI CASTG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.