Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002332.1

Orthogroup ID

OG0012505

Physical Location & Seq

Genomic Coordinates Reverse (-)

8935 .. 13175

Gene Structure 4241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002332.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggggtggtttgatatgggatggacccgatttgggaaaggcctggggtggtcttggtggcagagggtggagggtggtggtcaggcgattctgatggcagagggctgttggtggtcaatcggcaatggttgtggcaaagacaatcttctctttggccgtctggagggtcgtttcctgttctggagttgggttagcagcgatggtgaaaaaggtggtgacggtgttgggtttactttagtcctaggtctgacggtccagcaacttcactttggtcgggttcgaagttacaacgagtgtaggcttggtcgatggaaggcaggtccagtggactttgggtggcgagttagtgttgacaaagttgagaaaaacccaaggctttgtttcacagcaatggaaaggctaaactcgaagctgtacttgcagaatgtgtacataatgaaagagaatgagaggctgaggaagaaggcacagcttctgaaccaagagaatcaggcccttctttctgagctgaagcagaagctttcaaagccaaacaaagccaatggtgcttcaaacactgtgcctgatctgaatcttaacctgagctccaccaacaacaacaactcaaacaatcatccttccagttccagcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009888 GO:0009943 GO:0009955 GO:0009965 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010305 GO:0010358 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0065007 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.84

Weight (kDa)

9.59

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52770
fragaria_vesca	FvH4_6g18440 FvH4_6g18440 FvH4_6g18440 FvH4_6g18440
malus_domestica	MD12G1023500.v1.1 MD14G1020700.v1.1
prunus_persica	Prupe.2G079600_v2.0.a1 Prupe.7G113000_v2.0.a1
pyrus_communis	pycom12g02190 pycom14g02020
rosa_chinensis	RchiOBHm_Chr3g0472971
rosa_laevigata	RLG00000024041
rosa_multiflora	Rmu_sc0002332.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408440
rosa_rugosa	Rorug03G0130200
rosa_samantha	Rh3BG208400 Rh3DG167600
rosa_wichuraiana	Rw3G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	2 cut(s)	416, 431
AfiI	CCNNNNNNNGG	2 cut(s)	33, 163
AgsI	TTSAA	2 cut(s)	525, 552
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	5 cut(s)	412, 472, 508, 520, 585
AluI	AGCT	5 cut(s)	412, 472, 508, 520, 585
Alw21I	GWGCWC	1 cut(s)	587
AlwNI	CAGNNNCTG	2 cut(s)	475, 633
AoxI	GGCC	3 cut(s)	40, 154, 492
ApeKI	GCWGC	1 cut(s)	195
AspA2I	CCTAGG	1 cut(s)	241
AspS9I	GGNCC	4 cut(s)	24, 253, 320, 493
AsuHPI	GGTGA	2 cut(s)	215, 227
AsuII	TTCGAA	1 cut(s)	280
AvaII	GGWCC	3 cut(s)	24, 253, 320
AvrII	CCTAGG	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	587
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	4 cut(s)	15, 88, 194, 303
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	44
BfaI	CTAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	1 cut(s)	196
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	3 cut(s)	24, 253, 320
BmgT120I	GGNCC	4 cut(s)	24, 253, 320, 493
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	44
BpmI	CTGGAG	2 cut(s)	182, 202
Bpu10I	CCTNAGC	2 cut(s)	455, 581
Bpu14I	TTCGAA	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	3 cut(s)	43, 241, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 163
Bse1I	ACTGG	2 cut(s)	323, 621
Bse3DI	GCAATG	2 cut(s)	130, 396
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	43, 241, 371
BseGI	GGATG	2 cut(s)	26, 613
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	33, 163
BseMI	GCAATG	2 cut(s)	130, 396
BseMII	CTCAG	3 cut(s)	446, 495, 572
BseNI	ACTGG	2 cut(s)	323, 621
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	3 cut(s)	42, 156, 494
BsiHKAI	GWGCWC	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	33, 163
BsnI	GGCC	3 cut(s)	42, 156, 494
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	565
BspANI	GGCC	3 cut(s)	42, 156, 494
BspCNI	CTCAG	3 cut(s)	447, 496, 573
BspLI	GGNNCC	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	130, 396
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	323, 621
BssECI	CCNNGG	3 cut(s)	43, 241, 371
BssMI	GATC	1 cut(s)	565
BssT1I	CCWWGG	2 cut(s)	241, 371
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	221, 253, 559
BstAUI	TGTACA	1 cut(s)	429
BstBI	TTCGAA	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	455, 504, 581
BstF5I	GGATG	2 cut(s)	26, 613
BstKTI	GATC	1 cut(s)	568
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	3 cut(s)	418, 526, 545
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	42, 156, 494
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	26, 613
BtsIMutI	CAGTG	2 cut(s)	330, 555
BveI	ACCTGC	1 cut(s)	308
CaiI	CAGNNNCTG	2 cut(s)	475, 633
Cfr13I	GGNCC	4 cut(s)	24, 253, 320, 493
Csp6I	GTAC	2 cut(s)	415, 430
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviQI	GTAC	2 cut(s)	415, 430
DdeI	CTNAG	3 cut(s)	455, 504, 581
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	241, 371
Eco147I	AGGCCT	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	587
Eco47I	GGWCC	3 cut(s)	24, 253, 320
Eco53kI	GAGCTC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	241, 371
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	2 cut(s)	241, 371
FaiI	YATR	2 cut(s)	17, 434
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 401, 433
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	33, 600
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	196
GsuI	CTGGAG	2 cut(s)	182, 202
HaeIII	GGCC	3 cut(s)	42, 156, 494
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	88, 487, 571
HphI	GGTGA	2 cut(s)	215, 227
Hpy166II	GTNNAC	4 cut(s)	231, 328, 352, 430
Hpy188I	TCNGA	5 cut(s)	93, 249, 477, 505, 570
Hpy188III	TCNNGA	2 cut(s)	161, 181
Hpy8I	GTNNAC	4 cut(s)	231, 328, 352, 430
HpyAV	CCTTC	4 cut(s)	307, 457, 506, 627
HpyCH4III	ACNGT	3 cut(s)	221, 253, 559
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	418, 526, 545
HpyF3I	CTNAG	3 cut(s)	455, 504, 581
Kzo9I	GATC	1 cut(s)	565
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	215, 284
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	2 cut(s)	137, 472
MhlI	GDGCHC	1 cut(s)	587
MnlI	CCTC	6 cut(s)	57, 64, 94, 157, 444, 450
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	418, 526, 545
NdeII	GATC	1 cut(s)	565
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	88, 487, 571
PkrI	GCNGC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	4 cut(s)	24, 253, 320, 493
PstNI	CAGNNNCTG	2 cut(s)	475, 633
RsaI	GTAC	2 cut(s)	416, 431
RsaNI	GTAC	2 cut(s)	415, 430
RseI	CAYNNNNRTG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	4 cut(s)	24, 253, 320, 493
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	587
SetI	ASST	9 cut(s)	214, 247, 322, 414, 474, 510, 522, 582, 587
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	3 cut(s)	24, 253, 320
SmiMI	CAYNNNNRTG	1 cut(s)	389
SseBI	AGGCCT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	587
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	2 cut(s)	241, 371
TaaI	ACNGT	3 cut(s)	221, 253, 559
TaqI	TCGA	3 cut(s)	280, 307, 407
TatI	WGTACW	2 cut(s)	414, 429
TfiI	GAWTC	3 cut(s)	88, 487, 571
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	2 cut(s)	330, 562
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	330, 562
VpaK11BI	GGWCC	3 cut(s)	24, 253, 320
XmaJI	CCTAGG	1 cut(s)	241
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.