FvH4_6g19720

Momilactone A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016365
Physical Location & Seq
Forward (+)
13197248 .. 13200703
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19720.t2

Sequence Viewer

Length: 840 bp
ATGGCATGCTCCTCGCTAGTTTCAGCTGTCACAAGAAGGCTAGAAGGAAAGGTGGCACTGATAACAGGAGGAGCCAGCGGCATAGGCGAATGTACAACCAGAACCTTTGTCAATCATGGGGCCAAAGTTGTCATTGCCGATGTCCAAGATGAGCTAGCTCATTCAGTCGTTGAATCCATAGGTTCGGAAAATTGCACCTTTGTCCATTGCGACGTTAGAGATGAAGCCCAGATAAAAAATGCTGTGGAACAAGCAGTGGCCACATACGGAAAACTAGACATCATGTTCAACAATGCAGGCATAGCTGACGAGAACAAGGCACGAATTATCGACAATACAAAGGATGATTTTGAGCGTGTACTTGGTGTCAACGTCACTGGTGTGTTCCTTGGCATAAAGCATGCTTCGCAGCCCATGATTAGGGCTCGAACTGGCTGCATAATATCGACAGCCAGTATCAGCTCCTACATTGGTGGTGCAGCATCACACGCATATGCATGTTCAAAGCACGCAATCAACGGTCTAACCAAGAATGCAGCCGTTGAGCTTGGCCAATTTGGGATTAGAGTGAATTGTGTGTCACCGTATGCGCTTGCGACGCCTCTAGCTACACAATTTGTTGGCCTTGATGATGAGGGACTTGAAAATGTAATGAACTCCTTGGCTAATTTGAAGGGTGTGACACTAAAGGCACAAGATGTTGCAAATGCTGCTCTTTATCTGGCTAGTGATGAGGCCAAGTACGTAAGTGGGCATAATCTTCTAATAGATGGGGGATTTAGCATAGTGAATCCATCATTCAGTAACATGTTTAAGTATCCAGAGGAAGAAGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

280

Amino Acids

29.53

Weight (kDa)

5.26

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 204 1.6e-52 short chain dehydrogenase
KR PF08659 18 - 177 1.1e-13 KR domain
Epimerase PF01370 18 - 195 8.6e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 24 - 260 4.5e-65 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016365)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19720 FvH4_6g19720
malus_domestica MD14G1033500.v1.1
prunus_persica Prupe.7G099500_v2.0.a1
pyrus_communis pycom05g19960 pycom14g02950
rosa_chinensis RchiOBHm_Chr3g0475081
rosa_laevigata RLG00000023865
rosa_multiflora Rmu_sc0003093.1_g000019
rosa_roxburghii Rroxscaffold_6G00406580
rosa_rugosa Rorug03G0146600
rosa_samantha Rh3AG196400 Rh3BG226400 Rh3DG221800
rosa_wichuraiana Rw3G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AcoI YGGCCR 2 cut(s) 258, 550
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 3 cut(s) 94, 360, 743
AfiI CCNNNNNNNGG 1 cut(s) 420
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 5 cut(s) 173, 289, 504, 644, 673
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 7 cut(s) 26, 154, 158, 305, 462, 547, 608
AluI AGCT 7 cut(s) 26, 154, 158, 305, 462, 547, 608
AoxI GGCC 5 cut(s) 120, 258, 550, 622, 735
ApeKI GCWGC 5 cut(s) 409, 435, 479, 536, 710
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 573
AsuNHI GCTAGC 1 cut(s) 154
BalI TGGCCA 2 cut(s) 260, 552
BanII GRGCYC 1 cut(s) 427
BbvI GCAGC 5 cut(s) 421, 422, 491, 548, 697
BccI CCATC 2 cut(s) 764, 802
BceAI ACGGC 1 cut(s) 524
BcgI CGANNNNNNTGC 3 cut(s) 28, 417, 451
BciVI GTATCC 1 cut(s) 828
BfaI CTAG 6 cut(s) 17, 41, 155, 275, 605, 726
BfuI GTATCC 1 cut(s) 828
BisI GCNGC 6 cut(s) 79, 410, 436, 480, 537, 711
BlsI GCNGC 6 cut(s) 80, 411, 437, 481, 538, 712
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 73, 121
BmsI GCATC 1 cut(s) 491
BmtI GCTAGC 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 745
BsaHI GRCGYC 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 388, 660
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 3 cut(s) 382, 436, 453
Bse3DI GCAATG 2 cut(s) 132, 205
BseDI CCNNGG 2 cut(s) 388, 660
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 2 cut(s) 132, 205
BseNI ACTGG 3 cut(s) 382, 436, 453
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 5 cut(s) 421, 422, 491, 548, 697
BsgI GTGCAG 1 cut(s) 498
BshFI GGCC 5 cut(s) 122, 260, 552, 624, 737
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 651
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 5 cut(s) 122, 260, 552, 624, 737
Bsp1286I GDGCHC 1 cut(s) 427
Bsp1407I TGTACA 1 cut(s) 92
BspACI CCGC 1 cut(s) 78
BspANI GGCC 5 cut(s) 122, 260, 552, 624, 737
BspLI GGNNCC 2 cut(s) 73, 121
BspOI GCTAGC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 132, 205
BsrGI TGTACA 1 cut(s) 92
BsrI ACTGG 3 cut(s) 382, 436, 453
BssECI CCNNGG 2 cut(s) 388, 660
BssNI GRCGYC 1 cut(s) 599
BssT1I CCWWGG 2 cut(s) 388, 660
Bst4CI ACNGT 3 cut(s) 521, 585, 837
BstACI GRCGYC 1 cut(s) 599
BstAPI GCANNNNNTGC 1 cut(s) 710
BstAUI TGTACA 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 745
BstC8I GCNNGC 7 cut(s) 7, 76, 156, 298, 402, 510, 594
BstF5I GGATG 1 cut(s) 349
BstHHI GCGC 1 cut(s) 592
BstMWI GCNNNNNNNGC 6 cut(s) 84, 302, 406, 488, 598, 710
BstNSI RCATGY 4 cut(s) 9, 404, 501, 811
BstSNI TACGTA 1 cut(s) 745
BstV1I GCAGC 5 cut(s) 421, 422, 491, 548, 697
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 5 cut(s) 122, 260, 552, 624, 737
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 56, 261, 375
Cac8I GCNNGC 7 cut(s) 7, 76, 156, 298, 402, 510, 594
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 607
Csp6I GTAC 3 cut(s) 93, 359, 742
CviAII CATG 7 cut(s) 6, 116, 283, 401, 415, 498, 808
CviQI GTAC 3 cut(s) 93, 359, 742
EaeI YGGCCR 2 cut(s) 258, 550
Eco105I TACGTA 1 cut(s) 745
Eco130I CCWWGG 2 cut(s) 388, 660
Eco24I GRGCYC 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 388, 660
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 2 cut(s) 388, 660
FaeI CATG 7 cut(s) 9, 119, 286, 404, 418, 501, 811
FaqI GGGAC 1 cut(s) 651
FatI CATG 7 cut(s) 5, 115, 282, 400, 414, 497, 807
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 6 cut(s) 79, 410, 436, 480, 537, 711
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 6 cut(s) 79, 410, 436, 480, 537, 711
FspBI CTAG 6 cut(s) 17, 41, 155, 275, 605, 726
GlaI GCGC 1 cut(s) 591
GluI GCNGC 6 cut(s) 79, 410, 436, 480, 537, 711
HaeIII GGCC 5 cut(s) 122, 260, 552, 624, 737
HgaI GACGC 1 cut(s) 607
HhaI GCGC 1 cut(s) 592
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 7 cut(s) 9, 119, 286, 404, 418, 501, 811
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 2 cut(s) 173, 790
HphI GGTGA 1 cut(s) 573
Hpy166II GTNNAC 2 cut(s) 359, 370
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 821
Hpy8I GTNNAC 2 cut(s) 359, 370
Hpy99I CGWCG 2 cut(s) 215, 601
HpyAV CCTTC 3 cut(s) 30, 38, 667
HpyCH4III ACNGT 3 cut(s) 521, 585, 837
HpyCH4IV ACGT 3 cut(s) 213, 372, 744
HpyCH4V TGCA 7 cut(s) 195, 296, 438, 479, 497, 536, 704
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 302, 406, 488, 598, 710
HpySE526I ACGT 3 cut(s) 213, 372, 744
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 7 cut(s) 9, 119, 286, 404, 418, 501, 811
HspAI GCGC 1 cut(s) 590
LmnI GCTCC 3 cut(s) 14, 71, 467
Lsp1109I GCAGC 5 cut(s) 421, 422, 491, 548, 697
LweI GCATC 1 cut(s) 491
MaeI CTAG 6 cut(s) 17, 41, 155, 275, 605, 726
MaeII ACGT 3 cut(s) 213, 372, 744
MaeIII GTNAC 5 cut(s) 28, 373, 579, 679, 803
MboII GAAGA 2 cut(s) 752, 839
MhlI GDGCHC 1 cut(s) 427
MlsI TGGCCA 2 cut(s) 260, 552
MluCI AATT 6 cut(s) 190, 324, 554, 571, 614, 667
MluNI TGGCCA 2 cut(s) 260, 552
MnlI CCTC 6 cut(s) 22, 62, 612, 628, 727, 817
Mox20I TGGCCA 2 cut(s) 260, 552
Mph1103I ATGCAT 1 cut(s) 499
MscI TGGCCA 2 cut(s) 260, 552
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 3 cut(s) 380, 492, 496
Msp20I TGGCCA 2 cut(s) 260, 552
MspA1I CMGCKG 2 cut(s) 26, 78
Mva1269I GAATGC 1 cut(s) 538
MwoI GCNNNNNNNGC 6 cut(s) 84, 302, 406, 488, 598, 710
NdeI CATATG 1 cut(s) 493
NheI GCTAGC 1 cut(s) 154
NlaIII CATG 7 cut(s) 9, 119, 286, 404, 418, 501, 811
NlaIV GGNNCC 2 cut(s) 73, 121
NmuCI GTSAC 4 cut(s) 28, 373, 579, 679
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 4 cut(s) 9, 404, 501, 811
OliI CACNNNNGTG 1 cut(s) 380
PaeI GCATGC 2 cut(s) 9, 404
PciI ACATGT 1 cut(s) 807
PctI GAATGC 1 cut(s) 538
PfeI GAWTC 2 cut(s) 173, 790
PkrI GCNGC 6 cut(s) 80, 411, 437, 481, 538, 712
Ppu21I YACGTR 1 cut(s) 745
PscI ACATGT 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 73, 121
PspPI GGNCC 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 3 cut(s) 94, 360, 743
RsaNI GTAC 3 cut(s) 93, 359, 742
RseI CAYNNNNRTG 3 cut(s) 380, 492, 496
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 6 cut(s) 79, 410, 436, 480, 537, 711
Sau96I GGNCC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 1 cut(s) 491
SmiMI CAYNNNNRTG 3 cut(s) 380, 492, 496
SnaBI TACGTA 1 cut(s) 745
SphI GCATGC 2 cut(s) 9, 404
Sse9I AATT 6 cut(s) 190, 324, 554, 571, 614, 667
SsiI CCGC 1 cut(s) 78
SspMI CTAG 6 cut(s) 17, 41, 155, 275, 605, 726
StyI CCWWGG 2 cut(s) 388, 660
TaaI ACNGT 3 cut(s) 521, 585, 837
TaiI ACGT 3 cut(s) 216, 375, 747
TaqI TCGA 3 cut(s) 330, 427, 446
TasI AATT 6 cut(s) 190, 324, 554, 571, 614, 667
TatI WGTACW 2 cut(s) 92, 358
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 2 cut(s) 173, 790
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 3 cut(s) 63, 261, 382
TseFI GTSAC 4 cut(s) 28, 373, 579, 679
TseI GCWGC 5 cut(s) 409, 435, 479, 536, 710
Tsp45I GTSAC 4 cut(s) 28, 373, 579, 679
TspDTI ATGAA 2 cut(s) 237, 668
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 3 cut(s) 63, 261, 382
XceI RCATGY 4 cut(s) 9, 404, 501, 811
XspI CTAG 6 cut(s) 17, 41, 155, 275, 605, 726
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.