Rw3G017870

Momilactone A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016365
Physical Location & Seq
Forward (+)
19637989 .. 19639650
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017870.1

Sequence Viewer

Length: 876 bp
ATGACATATCAATATAATAGGCGTGGCCCTACCCACCCAAAAAGTTCGGCTCGGCCCAGCCAAGCTCGAAAAAGCCTGCTAGAAGGAAAGGTGGCACTGATAACAGGAGGAGCTAGCGGCATAGGCGAATGCACAGCCAAAACCTTTGTCAATCATGGAGCCAAAGTTGTCATTGCCGACGTCCAAGACGAGCTGGCCCATTCAGTCGTCGAATCCATAGGCTCGGAAAACTGCACCTTTGTCCATTGCGATGTCAGAGACGAAGATCAAATAAAAAATGCTGTGGAAAAAGCGGTTTCCACATACGGGAAACTAGACATCATGTTCAACAATGCAGGTATAGCTGACGAGAACAAGGCACGAATTATCGACAATACTAAGGACGATTTCGAGCGTGTGCTTGGTATCAACGTCACTGGCGTTTTCCTTGGCATAAAGCATGCTTCACAGCCCATGATTCGGGCTCGAACTGGCAGCATAATATCGACAGCTAGTGTGAGCTCCTATATCGGTGGTGCGGCATCACACGCTTATGCGTGTTCGAAGCACGCAGTCAATGGTTTGACGAAGAATGCAGCCGTTGAGCTTGGCCAATTTGGGATTAGAGTGAATTGCTTGTCACCCTATGCGCTTGTGACGCCTCTGGCTACAAAATTTGTTGGCCTTGATGATGAGGGATTTGAGAATATGATGAGCTCTTTGGCTAATTTGAAGGGTGTGACACTTAAGGCACAAGATGTGGCAAATGCTGCTCTTTATTTGGCTAGTGATGAGGCCAGGTACATAAGTGGGCATAATCTTCTAATAGATGGAGGATTTAGCATAGTGAATCCATCATTTAGCAACATGTTTCAGTACCCAGAAGAAGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

291

Amino Acids

31.14

Weight (kDa)

6.07

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 30 - 218 1.1e-53 short chain dehydrogenase
KR PF08659 32 - 190 8.1e-13 KR domain
adh_short_C2 PF13561 38 - 274 3.5e-66 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016365)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19720 FvH4_6g19720
malus_domestica MD14G1033500.v1.1
prunus_persica Prupe.7G099500_v2.0.a1
pyrus_communis pycom05g19960 pycom14g02950
rosa_chinensis RchiOBHm_Chr3g0475081
rosa_laevigata RLG00000023865
rosa_multiflora Rmu_sc0003093.1_g000019
rosa_roxburghii Rroxscaffold_6G00406580
rosa_rugosa Rorug03G0146600
rosa_samantha Rh3AG196400 Rh3BG226400 Rh3DG221800
rosa_wichuraiana Rw3G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
Acc36I ACCTGC 1 cut(s) 326
AciI CCGC 3 cut(s) 117, 293, 518
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 1 cut(s) 653
AcyI GRCGYC 2 cut(s) 180, 638
AfaI GTAC 2 cut(s) 782, 857
AfiI CCNNNNNNNGG 2 cut(s) 306, 459
AflII CTTAAG 1 cut(s) 725
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 2 cut(s) 328, 712
AjnI CCWGG 1 cut(s) 776
AluBI AGCT 8 cut(s) 65, 113, 193, 344, 491, 501, 586, 696
AluI AGCT 8 cut(s) 65, 113, 193, 344, 491, 501, 586, 696
Alw21I GWGCWC 2 cut(s) 503, 698
Alw26I GTCTC 1 cut(s) 252
AoxI GGCC 6 cut(s) 25, 53, 195, 589, 661, 774
ApeKI GCWGC 3 cut(s) 474, 575, 749
ApoI RAATTY 1 cut(s) 653
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 3 cut(s) 26, 54, 196
AsuHPI GGTGA 1 cut(s) 612
AsuII TTCGAA 1 cut(s) 542
AsuNHI GCTAGC 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 772, 805
BalI TGGCCA 1 cut(s) 591
BanII GRGCYC 3 cut(s) 466, 503, 698
Bbv12I GWGCWC 2 cut(s) 503, 698
BbvI GCAGC 3 cut(s) 486, 587, 736
BccI CCATC 2 cut(s) 803, 841
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 5 cut(s) 80, 114, 314, 492, 765
BfrI CTTAAG 1 cut(s) 725
BfuAI ACCTGC 1 cut(s) 326
BisI GCNGC 5 cut(s) 118, 475, 519, 576, 750
BlsI GCNGC 5 cut(s) 119, 476, 520, 577, 751
Bme1390I CCNGG 1 cut(s) 778
BmgT120I GGNCC 3 cut(s) 26, 54, 196
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 778
BmsI GCATC 1 cut(s) 530
BmtI GCTAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 542
BsaHI GRCGYC 2 cut(s) 180, 638
BsaJI CCNNGG 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 459
Bse1I ACTGG 2 cut(s) 421, 475
Bse3DI GCAATG 2 cut(s) 171, 244
BseBI CCWGG 1 cut(s) 778
BseDI CCNNGG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 306, 459
BseMI GCAATG 2 cut(s) 171, 244
BseNI ACTGG 2 cut(s) 421, 475
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 486, 587, 736
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 217
BshFI GGCC 6 cut(s) 27, 55, 197, 591, 663, 776
BsiHKAI GWGCWC 2 cut(s) 503, 698
BslI CCNNNNNNNGG 2 cut(s) 306, 459
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmI GAATGC 2 cut(s) 134, 577
BsnI GGCC 6 cut(s) 27, 55, 197, 591, 663, 776
Bsp119I TTCGAA 1 cut(s) 542
Bsp1286I GDGCHC 3 cut(s) 466, 503, 698
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 3 cut(s) 117, 293, 518
BspANI GGCC 6 cut(s) 27, 55, 197, 591, 663, 776
BspLI GGNNCC 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 326
BspOI GCTAGC 1 cut(s) 117
BspQI GCTCTTC 1 cut(s) 861
BspT104I TTCGAA 1 cut(s) 542
BspTI CTTAAG 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 171, 244
BsrI ACTGG 2 cut(s) 421, 475
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 1 cut(s) 265
BssNI GRCGYC 2 cut(s) 180, 638
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 778
Bst6I CTCTTC 1 cut(s) 861
BstACI GRCGYC 2 cut(s) 180, 638
BstAFI CTTAAG 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 5 cut(s) 77, 115, 195, 441, 549
BstDEI CTNAG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 5 cut(s) 123, 341, 527, 637, 749
BstNI CCWGG 1 cut(s) 778
BstNSI RCATGY 2 cut(s) 443, 850
BstSCI CCNGG 1 cut(s) 776
BstV1I GCAGC 3 cut(s) 486, 587, 736
BsuRI GGCC 6 cut(s) 27, 55, 197, 591, 663, 776
BtgZI GCGATG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 95, 414
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 5 cut(s) 77, 115, 195, 441, 549
CfoI GCGC 1 cut(s) 631
Cfr13I GGNCC 3 cut(s) 26, 54, 196
CseI GACGC 1 cut(s) 646
Csp6I GTAC 2 cut(s) 781, 856
CviAII CATG 5 cut(s) 155, 322, 440, 454, 847
CviQI GTAC 2 cut(s) 781, 856
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
Ecl136II GAGCTC 2 cut(s) 501, 696
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 3 cut(s) 466, 503, 698
Eco53kI GAGCTC 2 cut(s) 501, 696
EcoICRI GAGCTC 2 cut(s) 501, 696
EcoRII CCWGG 1 cut(s) 776
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 3 cut(s) 466, 503, 698
ErhI CCWWGG 1 cut(s) 427
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 5 cut(s) 158, 325, 443, 457, 850
FatI CATG 5 cut(s) 154, 321, 439, 453, 846
Fnu4HI GCNGC 5 cut(s) 118, 475, 519, 576, 750
FriOI GRGCYC 3 cut(s) 466, 503, 698
Fsp4HI GCNGC 5 cut(s) 118, 475, 519, 576, 750
FspBI CTAG 5 cut(s) 80, 114, 314, 492, 765
GlaI GCGC 1 cut(s) 630
GluI GCNGC 5 cut(s) 118, 475, 519, 576, 750
GsaI CCCAGC 1 cut(s) 60
HaeIII GGCC 6 cut(s) 27, 55, 197, 591, 663, 776
HgaI GACGC 1 cut(s) 646
HhaI GCGC 1 cut(s) 631
Hin1I GRCGYC 2 cut(s) 180, 638
Hin1II CATG 5 cut(s) 158, 325, 443, 457, 850
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HinfI GANTC 3 cut(s) 212, 457, 829
HphI GGTGA 1 cut(s) 612
Hpy188I TCNGA 2 cut(s) 226, 257
Hpy99I CGWCG 2 cut(s) 182, 212
HpyAV CCTTC 2 cut(s) 77, 706
HpyCH4IV ACGT 2 cut(s) 180, 411
HpyCH4V TGCA 4 cut(s) 132, 234, 335, 575
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 341, 527, 637, 749
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 2 cut(s) 180, 411
Hsp92I GRCGYC 2 cut(s) 180, 638
Hsp92II CATG 5 cut(s) 158, 325, 443, 457, 850
HspAI GCGC 1 cut(s) 629
Kzo9I GATC 1 cut(s) 265
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 3 cut(s) 110, 158, 506
Lsp1109I GCAGC 3 cut(s) 486, 587, 736
LweI GCATC 1 cut(s) 530
MaeI CTAG 5 cut(s) 80, 114, 314, 492, 765
MaeII ACGT 2 cut(s) 180, 411
MaeIII GTNAC 4 cut(s) 412, 618, 634, 718
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 4 cut(s) 275, 580, 791, 875
MhlI GDGCHC 3 cut(s) 466, 503, 698
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 5 cut(s) 363, 593, 610, 653, 706
MluNI TGGCCA 1 cut(s) 591
MnlI CCTC 5 cut(s) 101, 651, 667, 766, 806
Mox20I TGGCCA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 591
MseI TTAA 1 cut(s) 726
MslI CAYNNNNRTG 2 cut(s) 249, 531
Msp20I TGGCCA 1 cut(s) 591
MspCI CTTAAG 1 cut(s) 725
MspR9I CCNGG 1 cut(s) 778
Mva1269I GAATGC 2 cut(s) 134, 577
MvaI CCWGG 1 cut(s) 778
MwoI GCNNNNNNNGC 5 cut(s) 123, 341, 527, 637, 749
NdeII GATC 1 cut(s) 265
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 5 cut(s) 158, 325, 443, 457, 850
NlaIV GGNNCC 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 4 cut(s) 412, 618, 634, 718
NspI RCATGY 2 cut(s) 443, 850
NspV TTCGAA 1 cut(s) 542
PaeI GCATGC 1 cut(s) 443
PciI ACATGT 1 cut(s) 846
PciSI GCTCTTC 1 cut(s) 861
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 417
PctI GAATGC 2 cut(s) 134, 577
PfeI GAWTC 3 cut(s) 212, 457, 829
PkrI GCNGC 5 cut(s) 119, 476, 520, 577, 751
PscI ACATGT 1 cut(s) 846
Psp124BI GAGCTC 2 cut(s) 503, 698
Psp6I CCWGG 1 cut(s) 776
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 776
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 3 cut(s) 26, 54, 196
RsaI GTAC 2 cut(s) 782, 857
RsaNI GTAC 2 cut(s) 781, 856
RseI CAYNNNNRTG 2 cut(s) 249, 531
SacI GAGCTC 2 cut(s) 503, 698
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 5 cut(s) 118, 475, 519, 576, 750
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 3 cut(s) 26, 54, 196
ScrFI CCNGG 1 cut(s) 778
SduI GDGCHC 3 cut(s) 466, 503, 698
SfaNI GCATC 1 cut(s) 530
SfuI TTCGAA 1 cut(s) 542
SmiMI CAYNNNNRTG 2 cut(s) 249, 531
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
SphI GCATGC 1 cut(s) 443
Sse9I AATT 5 cut(s) 363, 593, 610, 653, 706
SsiI CCGC 3 cut(s) 117, 293, 518
SspMI CTAG 5 cut(s) 80, 114, 314, 492, 765
SstI GAGCTC 2 cut(s) 503, 698
StyD4I CCNGG 1 cut(s) 776
StyI CCWWGG 1 cut(s) 427
TaiI ACGT 2 cut(s) 183, 414
TaqI TCGA 7 cut(s) 67, 210, 369, 390, 466, 485, 542
TasI AATT 5 cut(s) 363, 593, 610, 653, 706
TauI GCSGC 2 cut(s) 120, 521
TfiI GAWTC 3 cut(s) 212, 457, 829
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 2 cut(s) 102, 421
TseFI GTSAC 4 cut(s) 412, 618, 634, 718
TseI GCWGC 3 cut(s) 474, 575, 749
Tsp45I GTSAC 4 cut(s) 412, 618, 634, 718
TspRI CASTG 2 cut(s) 102, 421
Vha464I CTTAAG 1 cut(s) 725
XapI RAATTY 1 cut(s) 653
XceI RCATGY 2 cut(s) 443, 850
XspI CTAG 5 cut(s) 80, 114, 314, 492, 765
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.