pycom05g19960

Momilactone A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016365
Physical Location & Seq
Forward (+)
22904561 .. 22905329
769 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19960.3

Sequence Viewer

Length: 636 bp
ATGTATGTTGGAGGGAAAGGTGGCTCTGAAACCGGCGGAGCCAGCGGCATTGAAGAGTGCACAGCCAAAATTTTTGCCCAGCACGGCGCCAAAGTCATCATTGCAGATGTCCAAGATAATCTGGGCCATTCAGTCCATGAATCCATCGGCCCATCGGACTGCACGTTTGTCCACTATGACGTCACAGACGAAGCCCGAATAAAAAACGCCGTACACAAAGCTGTTGCCGCATACGGAAAGCTAGACATCATGTTCAACAACTCAGGCATAGCTGGCCAGTTCAAACCCCGAATCATCGACAACGAAAAATTGGATTTCGAGCCCCATGCCGCGCAAGCCATGATTCCTGCGCAGACGGGCTGCATAATTTCAACTGCTAGCCTGAGCTCATACATTGGTTGTGTGGTCTCACATGCATATTGTTGTTCCAAGCATGCAGTGAATGGTCTGACCAAAAATGCAGCCGCTGAGTTAGGTCAGTTCGGGATCCGAGTGAACTCTAAGGATGATGAGGACATTGAGAATACGATGGGATCTCTAGCTAACTTGAAGGCCATGACACTTAAGGCAGTGGATGTGGCAAACGCAGCCCTATATTTGGCAAGTGATGAGGCTAGGTATATCAGTGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

212

Amino Acids

22.24

Weight (kDa)

5.55

Isoelectric Point (pI)

21.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016365)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19720 FvH4_6g19720
malus_domestica MD14G1033500.v1.1
prunus_persica Prupe.7G099500_v2.0.a1
pyrus_communis pycom05g19960 pycom14g02950
rosa_chinensis RchiOBHm_Chr3g0475081
rosa_laevigata RLG00000023865
rosa_multiflora Rmu_sc0003093.1_g000019
rosa_roxburghii Rroxscaffold_6G00406580
rosa_rugosa Rorug03G0146600
rosa_samantha Rh3AG196400 Rh3BG226400 Rh3DG221800
rosa_wichuraiana Rw3G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
Acc16I TGCGCA 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 86
AccII CGCG 1 cut(s) 332
AciI CCGC 5 cut(s) 36, 45, 228, 330, 465
AclWI GGATC 3 cut(s) 481, 494, 541
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 69
AcyI GRCGYC 2 cut(s) 87, 180
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 598
AflII CTTAAG 1 cut(s) 563
AgsI TTSAA 5 cut(s) 53, 256, 283, 372, 550
AluBI AGCT 5 cut(s) 221, 241, 272, 387, 542
AluI AGCT 5 cut(s) 221, 241, 272, 387, 542
Alw21I GWGCWC 2 cut(s) 62, 389
Alw26I GTCTC 1 cut(s) 412
Alw44I GTGCAC 1 cut(s) 58
AlwI GGATC 3 cut(s) 481, 494, 541
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 4 cut(s) 124, 148, 274, 552
ApaLI GTGCAC 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 360, 461, 587
ApoI RAATTY 1 cut(s) 69
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 3 cut(s) 89, 334, 352
AspS9I GGNCC 2 cut(s) 124, 149
AsuNHI GCTAGC 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 62
BalI TGGCCA 1 cut(s) 276
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 2 cut(s) 324, 389
Bbv12I GWGCWC 2 cut(s) 62, 389
BbvI GCAGC 3 cut(s) 347, 473, 599
BccI CCATC 3 cut(s) 152, 160, 523
BceAI ACGGC 2 cut(s) 100, 194
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 4 cut(s) 242, 378, 539, 615
BfoI RGCGCY 1 cut(s) 90
BfrI CTTAAG 1 cut(s) 563
BisI GCNGC 7 cut(s) 46, 228, 330, 361, 462, 465, 588
BlsI GCNGC 7 cut(s) 47, 229, 331, 362, 463, 466, 589
BmgT120I GGNCC 2 cut(s) 124, 149
BmiI GGNNCC 3 cut(s) 40, 88, 488
BmtI GCTAGC 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 383
BsaHI GRCGYC 2 cut(s) 87, 180
BsaI GGTCTC 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 99
BseGI GGATG 2 cut(s) 511, 580
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 276, 374, 459
BseNI ACTGG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 3 cut(s) 347, 473, 599
BseYI CCCAGC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 4 cut(s) 126, 150, 276, 554
BshNI GGYRCC 1 cut(s) 86
BsiHKAI GWGCWC 2 cut(s) 62, 389
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 1 cut(s) 412
BsnI GGCC 4 cut(s) 126, 150, 276, 554
Bso31I GGTCTC 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 62, 324, 389
Bsp143I GATC 2 cut(s) 486, 533
BspACI CCGC 5 cut(s) 36, 45, 228, 330, 465
BspANI GGCC 4 cut(s) 126, 150, 276, 554
BspCNI CTCAG 3 cut(s) 275, 375, 460
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 3 cut(s) 40, 88, 488
BspOI GCTAGC 1 cut(s) 381
BspPI GGATC 3 cut(s) 481, 494, 541
BspT107I GGYRCC 1 cut(s) 86
BspTI CTTAAG 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 277
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 2 cut(s) 486, 533
BssNI GRCGYC 2 cut(s) 87, 180
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 2 cut(s) 87, 180
BstAFI CTTAAG 1 cut(s) 563
BstC8I GCNNGC 5 cut(s) 43, 274, 336, 379, 435
BstDEI CTNAG 4 cut(s) 262, 383, 468, 501
BstF5I GGATG 2 cut(s) 511, 580
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 3 cut(s) 89, 334, 352
BstKTI GATC 2 cut(s) 489, 536
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 2 cut(s) 486, 533
BstMWI GCNNNNNNNGC 5 cut(s) 42, 227, 273, 335, 587
BstNSI RCATGY 2 cut(s) 416, 437
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 347, 473, 599
BstX2I RGATCY 2 cut(s) 486, 533
BstYI RGATCY 2 cut(s) 486, 533
BsuRI GGCC 4 cut(s) 126, 150, 276, 554
BtsCI GGATG 2 cut(s) 511, 580
BtsI GCAGTG 2 cut(s) 444, 576
BtsIMutI CAGTG 3 cut(s) 444, 576, 631
Cac8I GCNNGC 5 cut(s) 43, 274, 336, 379, 435
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 3 cut(s) 89, 334, 352
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 124, 149
Csp6I GTAC 1 cut(s) 212
CviAII CATG 7 cut(s) 137, 250, 326, 340, 413, 434, 556
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 4 cut(s) 262, 383, 468, 501
DinI GGCGCC 1 cut(s) 88
DpnI GATC 2 cut(s) 488, 535
DpnII GATC 2 cut(s) 486, 533
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 387
Eco24I GRGCYC 2 cut(s) 324, 389
Eco31I GGTCTC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 387
EcoICRI GAGCTC 1 cut(s) 387
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 2 cut(s) 324, 389
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
FaeI CATG 7 cut(s) 140, 253, 329, 343, 416, 437, 559
FatI CATG 7 cut(s) 136, 249, 325, 339, 412, 433, 555
Fnu4HI GCNGC 7 cut(s) 46, 228, 330, 361, 462, 465, 588
FokI GGATG 2 cut(s) 518, 587
FriOI GRGCYC 2 cut(s) 324, 389
Fsp4HI GCNGC 7 cut(s) 46, 228, 330, 361, 462, 465, 588
FspBI CTAG 4 cut(s) 242, 378, 539, 615
FspI TGCGCA 1 cut(s) 351
GlaI GCGC 3 cut(s) 88, 333, 351
GluI GCNGC 7 cut(s) 46, 228, 330, 361, 462, 465, 588
GsaI CCCAGC 1 cut(s) 82
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 4 cut(s) 126, 150, 276, 554
HapII CCGG 1 cut(s) 33
HhaI GCGC 3 cut(s) 89, 334, 352
Hin1I GRCGYC 2 cut(s) 87, 180
Hin1II CATG 7 cut(s) 140, 253, 329, 343, 416, 437, 559
Hin6I GCGC 3 cut(s) 87, 332, 350
HinP1I GCGC 3 cut(s) 87, 332, 350
HinfI GANTC 3 cut(s) 140, 291, 343
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 4 cut(s) 60, 172, 214, 496
Hpy188I TCNGA 4 cut(s) 28, 157, 450, 491
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 4 cut(s) 60, 172, 214, 496
HpyAV CCTTC 1 cut(s) 544
HpyCH4IV ACGT 2 cut(s) 164, 180
HpyCH4V TGCA 7 cut(s) 60, 104, 162, 363, 416, 437, 461
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 227, 273, 335, 587
HpyF3I CTNAG 4 cut(s) 262, 383, 468, 501
HpySE526I ACGT 2 cut(s) 164, 180
Hsp92I GRCGYC 2 cut(s) 87, 180
Hsp92II CATG 7 cut(s) 140, 253, 329, 343, 416, 437, 559
HspAI GCGC 3 cut(s) 87, 332, 350
KasI GGCGCC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 486, 533
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 9 cut(s) 46, 55, 92, 107, 249, 258, 290, 360, 395
Lsp1109I GCAGC 3 cut(s) 347, 473, 599
MaeI CTAG 4 cut(s) 242, 378, 539, 615
MaeII ACGT 2 cut(s) 164, 180
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 488, 535
MboI GATC 2 cut(s) 486, 533
MboII GAAGA 1 cut(s) 65
MflI RGATCY 2 cut(s) 486, 533
MhlI GDGCHC 3 cut(s) 62, 324, 389
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 3 cut(s) 69, 308, 366
MluNI TGGCCA 1 cut(s) 276
Mly113I GGCGCC 1 cut(s) 87
MnlI CCTC 3 cut(s) 5, 505, 604
Mox20I TGGCCA 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 418
MscI TGGCCA 1 cut(s) 276
MseI TTAA 2 cut(s) 564, 634
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 45, 467
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 42, 227, 273, 335, 587
NarI GGCGCC 1 cut(s) 87
NdeII GATC 2 cut(s) 486, 533
NheI GCTAGC 1 cut(s) 377
NlaIII CATG 7 cut(s) 140, 253, 329, 343, 416, 437, 559
NlaIV GGNNCC 3 cut(s) 40, 88, 488
NmuCI GTSAC 1 cut(s) 181
NsbI TGCGCA 1 cut(s) 351
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 2 cut(s) 416, 437
PaeI GCATGC 1 cut(s) 437
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 186
PfeI GAWTC 3 cut(s) 140, 291, 343
PkrI GCNGC 7 cut(s) 47, 229, 331, 362, 463, 466, 589
PluTI GGCGCC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 40, 88, 488
PspPI GGNCC 2 cut(s) 124, 149
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 2 cut(s) 486, 533
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SacI GAGCTC 1 cut(s) 389
SaqAI TTAA 2 cut(s) 564, 634
SatI GCNGC 7 cut(s) 46, 228, 330, 361, 462, 465, 588
Sau3AI GATC 2 cut(s) 486, 533
Sau96I GGNCC 2 cut(s) 124, 149
SduI GDGCHC 3 cut(s) 62, 324, 389
SfoI GGCGCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 1 cut(s) 437
Sse9I AATT 3 cut(s) 69, 308, 366
SsiI CCGC 5 cut(s) 36, 45, 228, 330, 465
SspDI GGCGCC 1 cut(s) 86
SspMI CTAG 4 cut(s) 242, 378, 539, 615
SstI GAGCTC 1 cut(s) 389
TaiI ACGT 2 cut(s) 167, 183
TaqI TCGA 2 cut(s) 297, 318
TasI AATT 3 cut(s) 69, 308, 366
TauI GCSGC 4 cut(s) 48, 230, 332, 467
TfiI GAWTC 3 cut(s) 140, 291, 343
Tru1I TTAA 2 cut(s) 564, 634
Tru9I TTAA 2 cut(s) 564, 634
TscAI CASTG 3 cut(s) 444, 576, 631
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 360, 461, 587
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 3 cut(s) 444, 576, 631
Vha464I CTTAAG 1 cut(s) 563
VneI GTGCAC 1 cut(s) 58
XapI RAATTY 1 cut(s) 69
XceI RCATGY 2 cut(s) 416, 437
XspI CTAG 4 cut(s) 242, 378, 539, 615
ZraI GACGTC 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.