Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003093.1

Orthogroup ID

OG0016365

Physical Location & Seq

Genomic Coordinates Forward (+)

93525 .. 95824

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003093.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ctgagggggcttggagtcggcttcggaggcgatgcttttgcgggtgattttgaggaagcaaacgaggaggaagaagaggagggagaaggcggcggcggcggcgagtgggacgaggagatgggtgcgatggggctgcggtggctgagagtgacgggaggaggaggaggaagaattaagaagaagaagaagaagcgggaggaggaggaaccgatagcccggataaaccggcccgttttgtgtcggtccgggcttaggacggtccccgttctttgcatctgcaagctagaaggaaaggtggcactgataacaggaggagctagcggcataggcgaatgcacagccaaaacctttgtcaatcatggagccagagttgtcattgccgacgtccaagacgagctggcccattcagtcgtcgaatccataggctcggaaaactgcacctttgtccattgcgatgtcagagacgaagatcaaataaaaaatgctgtggaaaaagcggtttccacatacgggaaactagacatcatgttcaacaatgcaggtatagctgacgagaacaaggcacgaattatcgacaatactaaggacgatttcgagcgtgtgcttggtatcaacgtcactggcgttttccttggcataaagcatgcttcacagcccatgattcgggctcgaactggcagcataatatcgacagctagtgtgagctcctatatcggtggtgcggcatcacacgcttatgcgtgttcgaagcacgcagtcaatggtttgaccaagaatgcagccgttgagcttggccaatttgggattagagtgaattgcttgtcaccctatgcgcttgtgacgcctctggctacgaaatttgttggccttgatgatgagggatttgagaatatgatgagctctttggctaatttgaagggtgtgacactaaaggcacaagatgtggcaaatgctgctctttatttggctagtgatgaggccaggtacataagtgggcataatcttctaatagatggaggatttagcatagtgaatccatcatttagcaacatgtttcagtacccagaagaagagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

359

Amino Acids

38.31

Weight (kDa)

5.13

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016365)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19720 FvH4_6g19720
malus_domestica	MD14G1033500.v1.1
prunus_persica	Prupe.7G099500_v2.0.a1
pyrus_communis	pycom05g19960 pycom14g02950
rosa_chinensis	RchiOBHm_Chr3g0475081
rosa_laevigata	RLG00000023865
rosa_multiflora	Rmu_sc0003093.1_g000019
rosa_roxburghii	Rroxscaffold_6G00406580
rosa_rugosa	Rorug03G0146600
rosa_samantha	Rh3AG196400 Rh3BG226400 Rh3DG221800
rosa_wichuraiana	Rw3G017870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	1 cut(s)	857
AcyI	GRCGYC	2 cut(s)	384, 842
AfaI	GTAC	2 cut(s)	986, 1061
AfiI	CCNNNNNNNGG	3 cut(s)	252, 510, 663
AflIII	ACRYGT	1 cut(s)	1050
AgsI	TTSAA	2 cut(s)	532, 916
AjnI	CCWGG	1 cut(s)	980
AluBI	AGCT	8 cut(s)	283, 317, 397, 548, 695, 705, 790, 900
AluI	AGCT	8 cut(s)	283, 317, 397, 548, 695, 705, 790, 900
Alw21I	GWGCWC	2 cut(s)	707, 902
Alw26I	GTCTC	1 cut(s)	456
AoxI	GGCC	5 cut(s)	227, 399, 793, 865, 978
ApeKI	GCWGC	4 cut(s)	133, 678, 779, 953
ApoI	RAATTY	1 cut(s)	857
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	4 cut(s)	228, 243, 259, 400
AsuC2I	CCSGG	2 cut(s)	217, 247
AsuHPI	GGTGA	2 cut(s)	56, 816
AsuII	TTCGAA	1 cut(s)	746
AsuNHI	GCTAGC	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	243, 259
BaeI	ACNNNNGTAYC	2 cut(s)	976, 1009
BalI	TGGCCA	1 cut(s)	795
BanII	GRGCYC	3 cut(s)	670, 707, 902
Bbv12I	GWGCWC	2 cut(s)	707, 902
BbvI	GCAGC	4 cut(s)	120, 690, 791, 940
BccI	CCATC	4 cut(s)	112, 121, 1007, 1045
BceAI	ACGGC	1 cut(s)	767
BcgI	CGANNNNNNTGC	4 cut(s)	20, 54, 115, 149
BciT130I	CCWGG	1 cut(s)	982
BcnI	CCSGG	2 cut(s)	217, 247
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	5 cut(s)	284, 318, 518, 696, 969
BfuAI	ACCTGC	1 cut(s)	530
Bme1390I	CCNGG	3 cut(s)	217, 247, 982
Bme18I	GGWCC	2 cut(s)	243, 259
BmgT120I	GGNCC	4 cut(s)	228, 243, 259, 400
BmiI	GGNNCC	3 cut(s)	207, 261, 364
BmrFI	CCNGG	3 cut(s)	217, 247, 982
BmsI	GCATC	3 cut(s)	22, 282, 734
BmtI	GCTAGC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	746
BpuMI	CCSGG	2 cut(s)	217, 247
BsaHI	GRCGYC	2 cut(s)	384, 842
BsaJI	CCNNGG	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 510, 663
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	625, 679
Bse3DI	GCAATG	2 cut(s)	375, 448
BseBI	CCWGG	1 cut(s)	982
BseDI	CCNNGG	1 cut(s)	631
BseLI	CCNNNNNNNGG	3 cut(s)	252, 510, 663
BseMI	GCAATG	2 cut(s)	375, 448
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	625, 679
BseRI	GAGGAG	9 cut(s)	80, 92, 128, 171, 174, 177, 212, 215, 327
BseXI	GCAGC	4 cut(s)	120, 690, 791, 940
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	5 cut(s)	229, 401, 795, 867, 980
BsiHKAI	GWGCWC	2 cut(s)	707, 902
BsiSI	CCGG	3 cut(s)	217, 226, 246
BslFI	GGGAC	2 cut(s)	122, 245
BslI	CCNNNNNNNGG	3 cut(s)	252, 510, 663
BsmAI	GTCTC	1 cut(s)	456
BsmBI	CGTCTC	1 cut(s)	456
BsmFI	GGGAC	2 cut(s)	122, 245
BsmI	GAATGC	2 cut(s)	338, 781
BsnI	GGCC	5 cut(s)	229, 401, 795, 867, 980
Bsp119I	TTCGAA	1 cut(s)	746
Bsp1286I	GDGCHC	3 cut(s)	670, 707, 902
Bsp143I	GATC	1 cut(s)	469
BspANI	GGCC	5 cut(s)	229, 401, 795, 867, 980
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	207, 261, 364
BspMI	ACCTGC	1 cut(s)	530
BspOI	GCTAGC	1 cut(s)	321
BspQI	GCTCTTC	1 cut(s)	1065
BspT104I	TTCGAA	1 cut(s)	746
BsrDI	GCAATG	2 cut(s)	375, 448
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	625, 679
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	1 cut(s)	469
BssNI	GRCGYC	2 cut(s)	384, 842
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	982
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	69, 1065
BstACI	GRCGYC	2 cut(s)	384, 842
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstBI	TTCGAA	1 cut(s)	746
BstC8I	GCNNGC	5 cut(s)	281, 319, 399, 645, 753
BstDEI	CTNAG	4 cut(s)	2, 143, 251, 582
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 96, 99, 139, 327, 545, 731, 841, 953
BstNI	CCWGG	1 cut(s)	982
BstNSI	RCATGY	2 cut(s)	647, 1054
BstSCI	CCNGG	3 cut(s)	215, 245, 980
BstV1I	GCAGC	4 cut(s)	120, 690, 791, 940
BsuRI	GGCC	5 cut(s)	229, 401, 795, 867, 980
BtgZI	GCGATG	3 cut(s)	45, 140, 468
BtsIMutI	CAGTG	2 cut(s)	299, 618
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	5 cut(s)	281, 319, 399, 645, 753
CfoI	GCGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	4 cut(s)	228, 243, 259, 400
CpoI	CGGWCCG	1 cut(s)	243
CseI	GACGC	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	985, 1060
CspI	CGGWCCG	1 cut(s)	243
CviAII	CATG	5 cut(s)	359, 526, 644, 658, 1051
CviQI	GTAC	2 cut(s)	985, 1060
DdeI	CTNAG	4 cut(s)	2, 143, 251, 582
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	69, 1065
EarI	CTCTTC	2 cut(s)	69, 1065
Ecl136II	GAGCTC	2 cut(s)	705, 900
Eco130I	CCWWGG	1 cut(s)	631
Eco24I	GRGCYC	3 cut(s)	670, 707, 902
Eco47I	GGWCC	2 cut(s)	243, 259
Eco53kI	GAGCTC	2 cut(s)	705, 900
EcoICRI	GAGCTC	2 cut(s)	705, 900
EcoRII	CCWGG	1 cut(s)	980
EcoT14I	CCWWGG	1 cut(s)	631
EcoT38I	GRGCYC	3 cut(s)	670, 707, 902
ErhI	CCWWGG	1 cut(s)	631
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	5 cut(s)	362, 529, 647, 661, 1054
FaqI	GGGAC	2 cut(s)	122, 245
FatI	CATG	5 cut(s)	358, 525, 643, 657, 1050
FauI	CCCGC	2 cut(s)	34, 186
FriOI	GRGCYC	3 cut(s)	670, 707, 902
FspBI	CTAG	5 cut(s)	284, 318, 518, 696, 969
GlaI	GCGC	1 cut(s)	834
HaeIII	GGCC	5 cut(s)	229, 401, 795, 867, 980
HapII	CCGG	3 cut(s)	217, 226, 246
HgaI	GACGC	1 cut(s)	850
HhaI	GCGC	1 cut(s)	835
Hin1I	GRCGYC	2 cut(s)	384, 842
Hin1II	CATG	5 cut(s)	362, 529, 647, 661, 1054
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HinfI	GANTC	4 cut(s)	15, 416, 661, 1033
HpaII	CCGG	3 cut(s)	217, 226, 246
HphI	GGTGA	2 cut(s)	56, 816
Hpy188I	TCNGA	3 cut(s)	26, 430, 461
Hpy99I	CGWCG	2 cut(s)	386, 416
HpyAV	CCTTC	3 cut(s)	80, 281, 910
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	384, 615
HpyCH4V	TGCA	6 cut(s)	273, 279, 336, 438, 539, 779
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 96, 99, 139, 327, 545, 731, 841, 953
HpyF3I	CTNAG	4 cut(s)	2, 143, 251, 582
HpySE526I	ACGT	2 cut(s)	384, 615
Hsp92I	GRCGYC	2 cut(s)	384, 842
Hsp92II	CATG	5 cut(s)	362, 529, 647, 661, 1054
HspAI	GCGC	1 cut(s)	833
Kzo9I	GATC	1 cut(s)	469
LguI	GCTCTTC	1 cut(s)	1065
LmnI	GCTCC	3 cut(s)	314, 362, 710
Lsp1109I	GCAGC	4 cut(s)	120, 690, 791, 940
LweI	GCATC	3 cut(s)	22, 282, 734
MaeI	CTAG	5 cut(s)	284, 318, 518, 696, 969
MaeII	ACGT	2 cut(s)	384, 615
MaeIII	GTNAC	5 cut(s)	148, 616, 822, 838, 922
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	670, 707, 902
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	6 cut(s)	171, 567, 797, 814, 857, 910
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	1 cut(s)	24
Mox20I	TGGCCA	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	453, 735
Msp20I	TGGCCA	1 cut(s)	795
MspI	CCGG	3 cut(s)	217, 226, 246
MspR9I	CCNGG	3 cut(s)	217, 247, 982
Mva1269I	GAATGC	2 cut(s)	338, 781
MvaI	CCWGG	1 cut(s)	982
MwoI	GCNNNNNNNGC	9 cut(s)	27, 96, 99, 139, 327, 545, 731, 841, 953
NciI	CCSGG	2 cut(s)	217, 247
NdeII	GATC	1 cut(s)	469
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	5 cut(s)	362, 529, 647, 661, 1054
NlaIV	GGNNCC	3 cut(s)	207, 261, 364
NmuCI	GTSAC	5 cut(s)	148, 616, 822, 838, 922
NspI	RCATGY	2 cut(s)	647, 1054
NspV	TTCGAA	1 cut(s)	746
PaeI	GCATGC	1 cut(s)	647
PciI	ACATGT	1 cut(s)	1050
PciSI	GCTCTTC	1 cut(s)	1065
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 621
PctI	GAATGC	2 cut(s)	338, 781
PfeI	GAWTC	3 cut(s)	416, 661, 1033
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	1050
Psp124BI	GAGCTC	2 cut(s)	707, 902
Psp6I	CCWGG	1 cut(s)	980
PspGI	CCWGG	1 cut(s)	980
PspN4I	GGNNCC	3 cut(s)	207, 261, 364
PspPI	GGNCC	4 cut(s)	228, 243, 259, 400
RsaI	GTAC	2 cut(s)	986, 1061
RsaNI	GTAC	2 cut(s)	985, 1060
RseI	CAYNNNNRTG	2 cut(s)	453, 735
Rsr2I	CGGWCCG	1 cut(s)	243
RsrII	CGGWCCG	1 cut(s)	243
SacI	GAGCTC	2 cut(s)	707, 902
SapI	GCTCTTC	1 cut(s)	1065
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	4 cut(s)	228, 243, 259, 400
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	3 cut(s)	217, 247, 982
SduI	GDGCHC	3 cut(s)	670, 707, 902
SfaNI	GCATC	3 cut(s)	22, 282, 734
SfuI	TTCGAA	1 cut(s)	746
SinI	GGWCC	2 cut(s)	243, 259
SmiMI	CAYNNNNRTG	2 cut(s)	453, 735
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	6 cut(s)	171, 567, 797, 814, 857, 910
SspMI	CTAG	5 cut(s)	284, 318, 518, 696, 969
SstI	GAGCTC	2 cut(s)	707, 902
StyD4I	CCNGG	3 cut(s)	215, 245, 980
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	387, 618
TaqI	TCGA	6 cut(s)	414, 573, 594, 670, 689, 746
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	6 cut(s)	171, 567, 797, 814, 857, 910
TauI	GCSGC	6 cut(s)	93, 96, 99, 102, 324, 725
TfiI	GAWTC	3 cut(s)	416, 661, 1033
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	306, 625
TseFI	GTSAC	5 cut(s)	148, 616, 822, 838, 922
TseI	GCWGC	4 cut(s)	133, 678, 779, 953
Tsp45I	GTSAC	5 cut(s)	148, 616, 822, 838, 922
TspRI	CASTG	2 cut(s)	306, 625
VpaK11BI	GGWCC	2 cut(s)	243, 259
XapI	RAATTY	1 cut(s)	857
XceI	RCATGY	2 cut(s)	647, 1054
XspI	CTAG	5 cut(s)	284, 318, 518, 696, 969
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.