RLG00000023865

Momilactone A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016365
Physical Location & Seq
Reverse (-)
29319850 .. 29322461
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023865

Sequence Viewer

Length: 837 bp
ATGTCAGTCTCCTCGGTAGTTTCAGCTGTCACAAGAAGGCTAGAAGGAAAGGTGGCACTGATAACAGGAGGAGCTAGTGGCATAGGCGAATGCACAGCCAAAACCTTTGTCAATCATGGAGCCAAAGTTGTCATTGCTGATGTCCAAGACGAGCTAGCCCATTCAGTCGTTGAATCCGTGGGCTCGGAAAATTGCACCTTTGTCCATTGCGATGTCAGAGACGAAGATCAAATAAAAAATGCTGTGGAAAAAGCGGTTGCCACATACGGGAAACTAGACATCATGTTCAACAATGCAGGCATAGCTGACGAGAACAAGGCACGAATTATCGACAATACCAAGGACGATTTCGAGCGTGTGCTTGGTATCAACGTCACCGGCGTTTTCCTTGGCATAAAGCATGCTTCACAGCCCATGATTCGGGCTCGAACTGGCAGCATAATATCGACAGCTAGTGTGAGCTCCTATATTGGTGGTGCAGCATCACACGCCTATGCGTGTTCGAAGCACGCAGTCAATGGTTTGACCAAGAATGCAGCCGTTGAGCTTGGCCAATTTGGGATTAGAGTGAATTGCTTGTCACCCTATGCGCTTGTGACGCCTTTGGCTACGAAATTTGTTGGCCTTGATGATGAGGGATTTGAGAATATGATGAGCTCTTTGGCTAATTTGAAGGGTGTGACACTTAAGGCACAAGATGTGGCAAATGCTGCTCTTTATTTGGCTAGTGATGAGGCCAGGTACATAAGTGGGCATAATCTTCTAATAGATGGAGGATTTAGCATAGTGAATCCATCATTTAGCAACATGTTTCAGTACCCAGAAGAAGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

279

Amino Acids

29.47

Weight (kDa)

5.37

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 17 - 205 1.6e-53 short chain dehydrogenase
KR PF08659 19 - 177 9.2e-13 KR domain
adh_short_C2 PF13561 25 - 261 3.2e-66 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016365)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19720 FvH4_6g19720
malus_domestica MD14G1033500.v1.1
prunus_persica Prupe.7G099500_v2.0.a1
pyrus_communis pycom05g19960 pycom14g02950
rosa_chinensis RchiOBHm_Chr3g0475081
rosa_laevigata RLG00000023865
rosa_multiflora Rmu_sc0003093.1_g000019
rosa_roxburghii Rroxscaffold_6G00406580
rosa_rugosa Rorug03G0146600
rosa_samantha Rh3AG196400 Rh3BG226400 Rh3DG221800
rosa_wichuraiana Rw3G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 2 cut(s) 743, 818
AfiI CCNNNNNNNGG 2 cut(s) 267, 420
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 3 cut(s) 173, 289, 673
AjnI CCWGG 1 cut(s) 737
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 8 cut(s) 26, 74, 154, 305, 452, 462, 547, 657
AluI AGCT 8 cut(s) 26, 74, 154, 305, 452, 462, 547, 657
Alw21I GWGCWC 2 cut(s) 464, 659
Alw26I GTCTC 2 cut(s) 13, 213
AoxI GGCC 3 cut(s) 550, 622, 735
ApeKI GCWGC 4 cut(s) 435, 479, 536, 710
ApoI RAATTY 1 cut(s) 614
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AspLEI GCGC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 367, 573
AsuII TTCGAA 1 cut(s) 503
AsuNHI GCTAGC 1 cut(s) 154
BaeI ACNNNNGTAYC 2 cut(s) 733, 766
BalI TGGCCA 1 cut(s) 552
BanII GRGCYC 4 cut(s) 185, 427, 464, 659
Bbv12I GWGCWC 2 cut(s) 464, 659
BbvI GCAGC 4 cut(s) 447, 491, 548, 697
BccI CCATC 2 cut(s) 764, 802
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 13, 213
BfaI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
BfrI CTTAAG 1 cut(s) 686
BisI GCNGC 4 cut(s) 436, 480, 537, 711
BlsI GCNGC 4 cut(s) 437, 481, 538, 712
Bme1390I CCNGG 1 cut(s) 739
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 491
BmtI GCTAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 599
BsaJI CCNNGG 4 cut(s) 12, 177, 339, 388
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 420
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 132, 205
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 4 cut(s) 12, 177, 339, 388
BseLI CCNNNNNNNGG 2 cut(s) 267, 420
BseMI GCAATG 2 cut(s) 132, 205
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 4 cut(s) 447, 491, 548, 697
BsgI GTGCAG 1 cut(s) 498
BshFI GGCC 3 cut(s) 552, 624, 737
BsiHKAI GWGCWC 2 cut(s) 464, 659
BsiSI CCGG 1 cut(s) 378
BslI CCNNNNNNNGG 2 cut(s) 267, 420
BsmAI GTCTC 2 cut(s) 13, 213
BsmBI CGTCTC 1 cut(s) 213
BsmI GAATGC 2 cut(s) 95, 538
BsnI GGCC 3 cut(s) 552, 624, 737
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 4 cut(s) 185, 427, 464, 659
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 552, 624, 737
BspLI GGNNCC 1 cut(s) 121
BspOI GCTAGC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 822
BspT104I TTCGAA 1 cut(s) 503
BspTI CTTAAG 1 cut(s) 686
BsrDI GCAATG 2 cut(s) 132, 205
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 4 cut(s) 12, 177, 339, 388
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 599
BssT1I CCWWGG 2 cut(s) 339, 388
Bst2UI CCWGG 1 cut(s) 739
Bst6I CTCTTC 1 cut(s) 822
BstACI GRCGYC 1 cut(s) 599
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 4 cut(s) 156, 298, 402, 510
BstDSI CCRYGG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 13, 213
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 4 cut(s) 302, 488, 598, 710
BstNI CCWGG 1 cut(s) 739
BstNSI RCATGY 2 cut(s) 404, 811
BstSCI CCNGG 1 cut(s) 737
BstV1I GCAGC 4 cut(s) 447, 491, 548, 697
BsuRI GGCC 3 cut(s) 552, 624, 737
BtgI CCRYGG 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 4 cut(s) 156, 298, 402, 510
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 377
CseI GACGC 1 cut(s) 607
Csp6I GTAC 2 cut(s) 742, 817
CviAII CATG 5 cut(s) 116, 283, 401, 415, 808
CviQI GTAC 2 cut(s) 742, 817
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Ecl136II GAGCTC 2 cut(s) 462, 657
Eco130I CCWWGG 2 cut(s) 339, 388
Eco24I GRGCYC 4 cut(s) 185, 427, 464, 659
Eco53kI GAGCTC 2 cut(s) 462, 657
EcoICRI GAGCTC 2 cut(s) 462, 657
EcoRII CCWGG 1 cut(s) 737
EcoT14I CCWWGG 2 cut(s) 339, 388
EcoT38I GRGCYC 4 cut(s) 185, 427, 464, 659
ErhI CCWWGG 2 cut(s) 339, 388
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 5 cut(s) 119, 286, 404, 418, 811
FatI CATG 5 cut(s) 115, 282, 400, 414, 807
Fnu4HI GCNGC 4 cut(s) 436, 480, 537, 711
FriOI GRGCYC 4 cut(s) 185, 427, 464, 659
Fsp4HI GCNGC 4 cut(s) 436, 480, 537, 711
FspBI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
GlaI GCGC 1 cut(s) 591
GluI GCNGC 4 cut(s) 436, 480, 537, 711
HaeIII GGCC 3 cut(s) 552, 624, 737
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 607
HhaI GCGC 1 cut(s) 592
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 5 cut(s) 119, 286, 404, 418, 811
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 3 cut(s) 173, 418, 790
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 367, 573
Hpy188I TCNGA 2 cut(s) 187, 218
HpyAV CCTTC 3 cut(s) 30, 38, 667
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 5 cut(s) 93, 195, 296, 479, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 488, 598, 710
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 5 cut(s) 119, 286, 404, 418, 811
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 3 cut(s) 71, 119, 467
LpnPI CCDG 6 cut(s) 51, 282, 391, 417, 724, 751
Lsp1109I GCAGC 4 cut(s) 447, 491, 548, 697
LweI GCATC 1 cut(s) 491
MaeI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 5 cut(s) 28, 373, 579, 595, 679
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 3 cut(s) 236, 752, 836
MhlI GDGCHC 4 cut(s) 185, 427, 464, 659
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 6 cut(s) 190, 324, 554, 571, 614, 667
MluNI TGGCCA 1 cut(s) 552
MnlI CCTC 5 cut(s) 22, 62, 628, 727, 767
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 2 cut(s) 210, 492
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 739
Mva1269I GAATGC 2 cut(s) 95, 538
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 4 cut(s) 302, 488, 598, 710
NdeII GATC 1 cut(s) 226
NheI GCTAGC 1 cut(s) 154
NlaIII CATG 5 cut(s) 119, 286, 404, 418, 811
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 5 cut(s) 28, 373, 579, 595, 679
NspI RCATGY 2 cut(s) 404, 811
NspV TTCGAA 1 cut(s) 503
PaeI GCATGC 1 cut(s) 404
PciI ACATGT 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 378
PctI GAATGC 2 cut(s) 95, 538
PfeI GAWTC 3 cut(s) 173, 418, 790
PkrI GCNGC 4 cut(s) 437, 481, 538, 712
PscI ACATGT 1 cut(s) 807
Psp124BI GAGCTC 2 cut(s) 464, 659
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 743, 818
RsaNI GTAC 2 cut(s) 742, 817
RseI CAYNNNNRTG 2 cut(s) 210, 492
SacI GAGCTC 2 cut(s) 464, 659
SapI GCTCTTC 1 cut(s) 822
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 4 cut(s) 436, 480, 537, 711
Sau3AI GATC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 4 cut(s) 185, 427, 464, 659
SfaNI GCATC 1 cut(s) 491
SfuI TTCGAA 1 cut(s) 503
SgrAI CRCCGGYG 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 210, 492
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SphI GCATGC 1 cut(s) 404
Sse9I AATT 6 cut(s) 190, 324, 554, 571, 614, 667
SsiI CCGC 1 cut(s) 254
SspMI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
SstI GAGCTC 2 cut(s) 464, 659
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 2 cut(s) 339, 388
TaiI ACGT 1 cut(s) 375
TaqI TCGA 5 cut(s) 330, 351, 427, 446, 503
TasI AATT 6 cut(s) 190, 324, 554, 571, 614, 667
TfiI GAWTC 3 cut(s) 173, 418, 790
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 5 cut(s) 28, 373, 579, 595, 679
TseI GCWGC 4 cut(s) 435, 479, 536, 710
Tsp45I GTSAC 5 cut(s) 28, 373, 579, 595, 679
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 1 cut(s) 686
XapI RAATTY 1 cut(s) 614
XceI RCATGY 2 cut(s) 404, 811
XspI CTAG 6 cut(s) 41, 75, 155, 275, 453, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.