Rorug03G0146600

Momilactone A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016365
Physical Location & Seq
Reverse (-)
11993442 .. 11993960
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0146600.1

Sequence Viewer

Length: 519 bp
ATGGCTGTAGTCCATGCGTGTTTTGAACCCCATGTTGCTAATAAGATATTCTCTATTCCCTTAAGTCGGCGTTTGGGGGCAGATAGACTCTCATGGAAGCTTGACAAAAAAGGTCTTTTCTCTGTCAAATCGGCCTATAAAGTGGCTTGTGATTTTTCTAGAGGTCCTCTCTTTGCTTCAGCCTCTACCGGGGATCCATATGGACCTATATGGAAAGCGAGGGTCCCTAGCAAGGTGGCTATATTCGGCTGGAGGGCAGTCCATAATTTACTTCCTACTCGGGTTGCCTTGACTGCTAAAGGTTACTCTGGTCCCTTGCATTGCGTTGTCTGTGCTAGGCAAGTGGAAACGTTAGAACACCTGTTTTGTGACGTTCATTTTGCGCGGGAAATCTTTGAAGCTCCACCTTTCCCTATTCCGGCATCAGATTTATCTTGGAAGGACTGGTTGTTGGAACGAGCTGTCTCTCTTTCTTCAGGTGTGTTTGATCAGCTATTGGTGTTGCTTTGGAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

172

Amino Acids

19.13

Weight (kDa)

9.22

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 40 - 131 1.2e-15 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016365)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19720 FvH4_6g19720
malus_domestica MD14G1033500.v1.1
prunus_persica Prupe.7G099500_v2.0.a1
pyrus_communis pycom05g19960 pycom14g02950
rosa_chinensis RchiOBHm_Chr3g0475081
rosa_laevigata RLG00000023865
rosa_multiflora Rmu_sc0003093.1_g000019
rosa_roxburghii Rroxscaffold_6G00406580
rosa_rugosa Rorug03G0146600
rosa_samantha Rh3AG196400 Rh3BG226400 Rh3DG221800
rosa_wichuraiana Rw3G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 385
AciI CCGC 1 cut(s) 385
AclI AACGTT 1 cut(s) 350
AclWI GGATC 2 cut(s) 188, 201
AcuI CTGAAG 2 cut(s) 162, 459
AfiI CCNNNNNNNGG 4 cut(s) 66, 189, 232, 418
AflII CTTAAG 1 cut(s) 61
AgsI TTSAA 2 cut(s) 26, 398
AluBI AGCT 4 cut(s) 100, 401, 461, 493
AluI AGCT 4 cut(s) 100, 401, 461, 493
Alw26I GTCTC 1 cut(s) 469
AlwI GGATC 2 cut(s) 188, 201
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 4 cut(s) 164, 203, 223, 311
AsuC2I CCSGG 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 4 cut(s) 164, 203, 223, 311
BamHI GGATCC 1 cut(s) 193
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 469
BfaI CTAG 3 cut(s) 159, 228, 336
BfmI CTRYAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 4 cut(s) 164, 203, 223, 311
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 4 cut(s) 164, 203, 223, 311
BmiI GGNNCC 4 cut(s) 195, 224, 225, 313
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 189, 232, 418
Bse1I ACTGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 4 cut(s) 66, 189, 232, 418
BseMI GCAATG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 449
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 2 cut(s) 189, 419
BslFI GGGAC 2 cut(s) 209, 297
BslI CCNNNNNNNGG 4 cut(s) 66, 189, 232, 418
BsmAI GTCTC 1 cut(s) 469
BsmFI GGGAC 2 cut(s) 209, 297
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 279
Bsp143I GATC 2 cut(s) 193, 487
BspACI CCGC 1 cut(s) 385
BspANI GGCC 1 cut(s) 134
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 4 cut(s) 195, 224, 225, 313
BspPI GGATC 2 cut(s) 188, 201
BspTI CTTAAG 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 2 cut(s) 193, 487
BstAFI CTTAAG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 2 cut(s) 196, 490
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 2 cut(s) 193, 487
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 134
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 4 cut(s) 164, 203, 223, 311
CviAII CATG 3 cut(s) 14, 32, 93
DpnI GATC 2 cut(s) 195, 489
DpnII GATC 2 cut(s) 193, 487
Eco47I GGWCC 4 cut(s) 164, 203, 223, 311
Eco57I CTGAAG 2 cut(s) 162, 459
Eco88I CYCGRG 1 cut(s) 279
EcoO109I RGGNCCY 2 cut(s) 164, 223
FaeI CATG 3 cut(s) 17, 35, 96
FaqI GGGAC 2 cut(s) 209, 297
FatI CATG 3 cut(s) 13, 31, 92
FauI CCCGC 1 cut(s) 378
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 487
FspBI CTAG 3 cut(s) 159, 228, 336
GlaI GCGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 1 cut(s) 134
HapII CCGG 2 cut(s) 189, 419
HhaI GCGC 1 cut(s) 385
Hin1II CATG 3 cut(s) 17, 35, 96
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 87
HpaII CCGG 2 cut(s) 189, 419
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 433
HpyCH4IV ACGT 2 cut(s) 350, 372
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpySE526I ACGT 2 cut(s) 350, 372
Hsp92II CATG 3 cut(s) 17, 35, 96
HspAI GCGC 1 cut(s) 383
KflI GGGWCCC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 2 cut(s) 193, 487
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 7 cut(s) 202, 235, 294, 374, 430, 432, 462
LweI GCATC 1 cut(s) 431
MaeI CTAG 3 cut(s) 159, 228, 336
MaeII ACGT 2 cut(s) 350, 372
MaeIII GTNAC 2 cut(s) 302, 368
MalI GATC 2 cut(s) 195, 489
MboI GATC 2 cut(s) 193, 487
MboII GAAGA 1 cut(s) 465
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 265
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 5 cut(s) 155, 177, 193, 213, 246
MseI TTAA 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 61
MspI CCGG 2 cut(s) 189, 419
MspR9I CCNGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 193, 487
NlaIII CATG 3 cut(s) 17, 35, 96
NlaIV GGNNCC 4 cut(s) 195, 224, 225, 313
NmuCI GTSAC 1 cut(s) 368
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PpuMI RGGWCCY 2 cut(s) 164, 223
Psp1406I AACGTT 1 cut(s) 350
Psp5II RGGWCCY 2 cut(s) 164, 223
PspN4I GGNNCC 4 cut(s) 195, 224, 225, 313
PspPI GGNCC 4 cut(s) 164, 203, 223, 311
PspPPI RGGWCCY 2 cut(s) 164, 223
PsuI RGATCY 1 cut(s) 193
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 2 cut(s) 193, 487
Sau96I GGNCC 4 cut(s) 164, 203, 223, 311
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 190
SfaNI GCATC 1 cut(s) 431
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 4 cut(s) 164, 203, 223, 311
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 265
SsiI CCGC 1 cut(s) 385
SspMI CTAG 3 cut(s) 159, 228, 336
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 2 cut(s) 353, 375
TasI AATT 1 cut(s) 265
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 365
Vha464I CTTAAG 1 cut(s) 61
VpaK11BI GGWCC 4 cut(s) 164, 203, 223, 311
XbaI TCTAGA 1 cut(s) 158
XspI CTAG 3 cut(s) 159, 228, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.