Prupe.7G099500_v2.0.a1

Momilactone A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016365
Physical Location & Seq
Reverse (-)
13022528 .. 13024763
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G099500.1

Sequence Viewer

Length: 831 bp
ATGGCATTCTCCTCAGTACTCTCTGCAGTCACAAGAAGGCTTGAGGGAAAGGTGGCTCTGATAACTGGAGGAGCAAGTGGCATTGGAGAATGCACAGCGAAAATCTTTGCTCAGCATGGGGCCAAAATCGTCATTGCAGATGTCCAAGATGATCTGGGCCATTCAGTCCGGGAATCCATGGGCCCAACAGACTGCACATTCGTCCACTGTGATGTGACAGACGAAGCCCAAATAAAAAATGCAGTGCACAAAGCTGTTGCTACATATGGGAAGCTAGACATCATGTTCAACAATGCAGGCATAGTTGATGACAACAAGGCACGCATAATCGACAATGAAAAGGCCGATTTCGAGCGCATACTTAGCGTCAACGTCACCGGAGTTTTCCTCGGGATAAAGCATGCTGCGCAGGTCATGATCCCGGCACGAGCGGGCAGCATTATTTCAACTGCTAGCATAAGTTCATATGTTGGTGGTGCAGCCTCACATGCCTATTGTTGCTCAAAGCATGCCGTGAATGGCCTGACTAAAAATGCAGCTGTTGAGCTAGGCCAGTTCGGGATCAGAGTGAACTGCTTGTCGCCCTATGCGCTCGTGACGCCTTTGGCTAGGAAATTTGTTGGGCTTGAGGATGAGGAGATGGAGAATACGATGAGCGCATTGGCTAACTTGAAGGGTGTGACACTTAAGGCAGTAGATGTGGCAAATGCAGCTCTTTATTTGGCAAGTGATGAAGCTAGGTACATAAGCGGGCATAATCTTTTAATAGATGGGGCTTTCAGCATAGTTAATCCTGGCTTCCACATGTTTCAATACCCCCCAGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

277

Amino Acids

29.21

Weight (kDa)

5.97

Isoelectric Point (pI)

19.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016365)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19720 FvH4_6g19720
malus_domestica MD14G1033500.v1.1
prunus_persica Prupe.7G099500_v2.0.a1
pyrus_communis pycom05g19960 pycom14g02950
rosa_chinensis RchiOBHm_Chr3g0475081
rosa_laevigata RLG00000023865
rosa_multiflora Rmu_sc0003093.1_g000019
rosa_roxburghii Rroxscaffold_6G00406580
rosa_rugosa Rorug03G0146600
rosa_samantha Rh3AG196400 Rh3BG226400 Rh3DG221800
rosa_wichuraiana Rw3G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 408
Acc36I ACCTGC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 431
AciI CCGC 2 cut(s) 431, 750
AclWI GGATC 2 cut(s) 412, 569
AcsI RAATTY 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 2 cut(s) 18, 743
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 804
AgsI TTSAA 4 cut(s) 289, 447, 673, 812
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 6 cut(s) 254, 274, 539, 547, 713, 737
AluI AGCT 6 cut(s) 254, 274, 539, 547, 713, 737
Alw21I GWGCWC 1 cut(s) 249
Alw44I GTGCAC 1 cut(s) 245
AlwI GGATC 2 cut(s) 412, 569
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 6 cut(s) 120, 157, 181, 342, 520, 550
ApaI GGGCCC 1 cut(s) 185
ApaLI GTGCAC 1 cut(s) 245
ApeKI GCWGC 5 cut(s) 404, 435, 479, 536, 710
ApoI RAATTY 1 cut(s) 614
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 4 cut(s) 357, 409, 592, 659
AspS9I GGNCC 4 cut(s) 120, 157, 181, 182
AsuC2I CCSGG 2 cut(s) 170, 422
AsuHPI GGTGA 1 cut(s) 367
AsuNHI GCTAGC 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 389
BaeGI GKGCMC 2 cut(s) 185, 249
BanII GRGCYC 1 cut(s) 185
BauI CACGAG 2 cut(s) 426, 593
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 5 cut(s) 391, 447, 491, 548, 722
BccI CCATC 2 cut(s) 634, 764
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 795
BcnI CCSGG 2 cut(s) 170, 422
BfaI CTAG 5 cut(s) 275, 453, 548, 609, 738
BfmI CTRYAG 1 cut(s) 24
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 5 cut(s) 405, 436, 480, 537, 711
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 5 cut(s) 406, 437, 481, 538, 712
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 3 cut(s) 170, 422, 795
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 4 cut(s) 120, 157, 181, 182
BmiI GGNNCC 2 cut(s) 121, 183
BmrFI CCNGG 3 cut(s) 170, 422, 795
BmtI GCTAGC 1 cut(s) 456
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 62, 647
BpuMI CCSGG 2 cut(s) 170, 422
BsaHI GRCGYC 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 177, 388
BsaWI WCCGGW 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 70, 553
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 177, 388
BseGI GGATG 1 cut(s) 637
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 27, 125
BseNI ACTGG 2 cut(s) 70, 553
BseRI GAGGAG 2 cut(s) 84, 650
BseSI GKGCMC 2 cut(s) 185, 249
BseXI GCAGC 5 cut(s) 391, 447, 491, 548, 722
BsgI GTGCAG 2 cut(s) 178, 498
BshFI GGCC 6 cut(s) 122, 159, 183, 344, 522, 552
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 3 cut(s) 169, 378, 422
BsmI GAATGC 2 cut(s) 5, 95
BsnI GGCC 6 cut(s) 122, 159, 183, 344, 522, 552
BsoBI CYCGRG 1 cut(s) 389
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 185, 249
Bsp143I GATC 3 cut(s) 151, 417, 561
Bsp1720I GCTNAGC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 431, 750
BspANI GGCC 6 cut(s) 122, 159, 183, 344, 522, 552
BspCNI CTCAG 2 cut(s) 26, 124
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 2 cut(s) 121, 183
BspMAI CTGCAG 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 400
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 2 cut(s) 412, 569
BspTI CTTAAG 1 cut(s) 686
BsrBI CCGCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 70, 553
BssECI CCNNGG 2 cut(s) 177, 388
BssMI GATC 3 cut(s) 151, 417, 561
BssNI GRCGYC 1 cut(s) 599
BssSI CACGAG 2 cut(s) 426, 593
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 2 cut(s) 426, 593
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 599
BstAFI CTTAAG 1 cut(s) 686
BstC8I GCNNGC 7 cut(s) 298, 322, 402, 433, 454, 510, 752
BstDEI CTNAG 3 cut(s) 13, 111, 362
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 637
BstHHI GCGC 4 cut(s) 357, 409, 592, 659
BstKTI GATC 3 cut(s) 154, 420, 564
BstMBI GATC 3 cut(s) 151, 417, 561
BstMWI GCNNNNNNNGC 6 cut(s) 363, 406, 488, 589, 598, 710
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 4 cut(s) 404, 491, 512, 808
BstSCI CCNGG 3 cut(s) 168, 420, 793
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 2 cut(s) 185, 249
BstV1I GCAGC 5 cut(s) 391, 447, 491, 548, 722
BsuRI GGCC 6 cut(s) 122, 159, 183, 344, 522, 552
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 205, 249
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 7 cut(s) 298, 322, 402, 433, 454, 510, 752
CciI TCATGA 1 cut(s) 414
CfoI GCGC 4 cut(s) 357, 409, 592, 659
Cfr13I GGNCC 4 cut(s) 120, 157, 181, 182
CseI GACGC 2 cut(s) 355, 607
Csp6I GTAC 2 cut(s) 17, 742
CviAII CATG 8 cut(s) 116, 178, 283, 401, 415, 488, 509, 805
CviQI GTAC 2 cut(s) 17, 742
DdeI CTNAG 3 cut(s) 13, 111, 362
DpnI GATC 3 cut(s) 153, 419, 563
DpnII GATC 3 cut(s) 151, 417, 561
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 8 cut(s) 119, 181, 286, 404, 418, 491, 512, 808
FatI CATG 8 cut(s) 115, 177, 282, 400, 414, 487, 508, 804
FauI CCCGC 2 cut(s) 424, 743
FauNDI CATATG 2 cut(s) 265, 466
Fnu4HI GCNGC 5 cut(s) 405, 436, 480, 537, 711
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 5 cut(s) 405, 436, 480, 537, 711
FspBI CTAG 5 cut(s) 275, 453, 548, 609, 738
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 4 cut(s) 356, 408, 591, 658
GluI GCNGC 5 cut(s) 405, 436, 480, 537, 711
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 6 cut(s) 122, 159, 183, 344, 522, 552
HapII CCGG 3 cut(s) 169, 378, 422
HgaI GACGC 2 cut(s) 355, 607
HhaI GCGC 4 cut(s) 357, 409, 592, 659
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 8 cut(s) 119, 181, 286, 404, 418, 491, 512, 808
Hin6I GCGC 4 cut(s) 355, 407, 590, 657
HinP1I GCGC 4 cut(s) 355, 407, 590, 657
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 1 cut(s) 173
HpaII CCGG 3 cut(s) 169, 378, 422
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 4 cut(s) 205, 247, 370, 571
Hpy188I TCNGA 2 cut(s) 60, 566
Hpy188III TCNNGA 4 cut(s) 391, 415, 559, 595
Hpy8I GTNNAC 4 cut(s) 205, 247, 370, 571
HpyAV CCTTC 2 cut(s) 30, 667
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 372
HpyF10VI GCNNNNNNNGC 6 cut(s) 363, 406, 488, 589, 598, 710
HpyF3I CTNAG 3 cut(s) 13, 111, 362
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 8 cut(s) 119, 181, 286, 404, 418, 491, 512, 808
HspAI GCGC 4 cut(s) 355, 407, 590, 657
Kzo9I GATC 3 cut(s) 151, 417, 561
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 5 cut(s) 391, 447, 491, 548, 722
MaeI CTAG 5 cut(s) 275, 453, 548, 609, 738
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 5 cut(s) 28, 214, 373, 595, 679
MalI GATC 3 cut(s) 153, 419, 563
MbiI CCGCTC 1 cut(s) 431
MboI GATC 3 cut(s) 151, 417, 561
MhlI GDGCHC 2 cut(s) 185, 249
MluCI AATT 1 cut(s) 614
MnlI CCTC 7 cut(s) 22, 37, 62, 398, 493, 622, 628
MseI TTAA 3 cut(s) 687, 764, 789
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 539
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 3 cut(s) 169, 378, 422
MspR9I CCNGG 3 cut(s) 170, 422, 795
Mva1269I GAATGC 2 cut(s) 5, 95
MvaI CCWGG 1 cut(s) 795
MwoI GCNNNNNNNGC 6 cut(s) 363, 406, 488, 589, 598, 710
NciI CCSGG 2 cut(s) 170, 422
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 2 cut(s) 265, 466
NdeII GATC 3 cut(s) 151, 417, 561
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 8 cut(s) 119, 181, 286, 404, 418, 491, 512, 808
NlaIV GGNNCC 2 cut(s) 121, 183
NmuCI GTSAC 5 cut(s) 28, 214, 373, 595, 679
NsbI TGCGCA 1 cut(s) 408
NspI RCATGY 4 cut(s) 404, 491, 512, 808
PaeI GCATGC 2 cut(s) 404, 512
PagI TCATGA 1 cut(s) 414
PciI ACATGT 1 cut(s) 804
PctI GAATGC 2 cut(s) 5, 95
PfeI GAWTC 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 5 cut(s) 406, 437, 481, 538, 712
PscI ACATGT 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 2 cut(s) 121, 183
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 4 cut(s) 120, 157, 181, 182
PstI CTGCAG 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 2 cut(s) 18, 743
RsaNI GTAC 2 cut(s) 17, 742
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 3 cut(s) 687, 764, 789
SatI GCNGC 5 cut(s) 405, 436, 480, 537, 711
Sau3AI GATC 3 cut(s) 151, 417, 561
Sau96I GGNCC 4 cut(s) 120, 157, 181, 182
ScaI AGTACT 1 cut(s) 18
ScrFI CCNGG 3 cut(s) 170, 422, 795
SduI GDGCHC 2 cut(s) 185, 249
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 3 cut(s) 41, 626, 686
SmoI CTYRAG 3 cut(s) 41, 626, 686
SphI GCATGC 2 cut(s) 404, 512
Sse9I AATT 1 cut(s) 614
SsiI CCGC 2 cut(s) 431, 750
SspMI CTAG 5 cut(s) 275, 453, 548, 609, 738
StyD4I CCNGG 3 cut(s) 168, 420, 793
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 330, 351
TasI AATT 1 cut(s) 614
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 3 cut(s) 687, 764, 789
Tru9I TTAA 3 cut(s) 687, 764, 789
TscAI CASTG 2 cut(s) 212, 249
TseFI GTSAC 5 cut(s) 28, 214, 373, 595, 679
TseI GCWGC 5 cut(s) 404, 435, 479, 536, 710
Tsp45I GTSAC 5 cut(s) 28, 214, 373, 595, 679
TspDTI ATGAA 3 cut(s) 351, 453, 747
TspRI CASTG 2 cut(s) 212, 249
Vha464I CTTAAG 1 cut(s) 686
VneI GTGCAC 1 cut(s) 245
XapI RAATTY 1 cut(s) 614
XceI RCATGY 4 cut(s) 404, 491, 512, 808
XspI CTAG 5 cut(s) 275, 453, 548, 609, 738
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.