FvH4_6g24360

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
18482093 .. 18484139
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24360.t1

Sequence Viewer

Length: 1422 bp
ATGGCTTACAACCACCAAAACAACAATCATGATGAAGTGGTGGTTGTCATGGTTCCTTTACCAGCACAAGGCCACCTCAACCAGCTCCTCCACCTCTCCCGCCTCATCTCCACCTACAACATGCCCGTCCACTTTGTCGGAACCCCCAATCACAACCGTCAAGCCAAGCTCCGAGTCCACGGCTGGGATCAAACCTCATCAGACGCCAAAAACACGATCCATTTCCATGACTTCATCGTCCCTCCTTTCGTTTGCCCTGCTCCCAACCCCGACGCACCAAGCAAGTTCCCTTCTCATCTCCTACCCACGTTTGAAGCCACCACACATCTCCGTCACCCCGTCGCCGCACTTCTGCGCAAACTAGCCTCCCAAACAAGGCGTGTGGTTGTCATCCACGACTCCCTCATGGCTTCTGTCATCCAAGACGTTGGTTCTATAGCCAACAGCGAGTCTTACACATTCCACTCGGTCTCCGCCTTCGCCGTCTTCTTATACTTGTGGGAAGGAATCGGATGTCCGCCTGAACTCCAAGGGGTACAAGTCAAGAGTAAGATCCCCGATAACGTCCCAAGCCTCGAGGACTGCTTCCCTGACGAGTTCATGAATTTTATTGTTGCACAATATGAATACACAGGGTACAACTCCGGGAACATTTACAATGCCAGCAGAACCATAGAAGGTGAGTACGTTGATCTACTGAACAAGCTCGGTGATGACAAGAAGCATTGGGCAGTAGGGCCGTTCAACCCAGTTTCAGTACCGGAGAAAAATGGTAAGAGGCACGCTTGCTTGGAATGGCTTGATGAACAAGAACCGAACTCGGTGATCTACGTTTCGTTCGGGACAACAACATGCATGAAAGACGAGCAGATCAGGGAGCTGGCTATTGGGTTGGAACAATGCAACCACAAGTTCATTTGGGTATTGAGGGATGCTGATAAAGGTGACCTTTTCATGGACGGGGACCAAGTTAGAAAGGCTGAGCTTCCAAAAGGGTACGAAGAGAGAGTGAAAGAGAGGGGAGTAGTGGTCAGAGATTGGGCTCCCCAACTGGACATTCTGTCGCACAAATCCACTGCATGGTTTCTGAGTCACTGTGGATGGAACTCATGCATGGAGAGCCTCACTTTGGGAGTTCCCATAGCATGTTGGCCAATGCACTCTGACCAACCTAGGAACACAGTTTTGGTGACCAAGGTTCTCAAAGTTGGTGTGGTTATGAGGGATTGGGAGAGAAGGAACGAGCTTGTCACGTCGTCAATAGTGACAGATGGTGTGCATAAACTGATGGCGTCCTCTGGAGAAGTGGATGTGATAAGGAAGAAGGCGAGAGAGTTGGGTGCTGCCGTGAGAGGATCTATGGTGGAAGGCGGAGGCTCTCACATGGAGTTGTCTTCTTTTGTTGCTCATATCACCAGATAA

Protein Analysis

474

Amino Acids

53.09

Weight (kDa)

6.28

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 11 - 250 5e-81 Glycosyltransferase, N-terminal domain
UDPGT PF00201 272 - 399 3.6e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AbsI CCTCGAGG 1 cut(s) 575
Acc16I TGCGCA 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 1080
AciI CCGC 5 cut(s) 100, 345, 474, 518, 1371
AclWI GGATC 4 cut(s) 195, 211, 547, 1363
AcoI YGGCCR 1 cut(s) 1151
AcsI RAATTY 1 cut(s) 604
AcyI GRCGYC 2 cut(s) 204, 1292
AfaI GTAC 5 cut(s) 537, 638, 686, 759, 998
AfiI CCNNNNNNNGG 6 cut(s) 68, 184, 375, 955, 1080, 1129
AgsI TTSAA 2 cut(s) 314, 745
AhdI GACNNNNNGTC 1 cut(s) 1060
AjiI CACGTC 1 cut(s) 1254
AjuI GAANNNNNNNTTGG 4 cut(s) 1041, 1073, 1169, 1201
AluBI AGCT 6 cut(s) 85, 169, 706, 880, 985, 1246
AluI AGCT 6 cut(s) 85, 169, 706, 880, 985, 1246
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 4 cut(s) 195, 211, 547, 1363
Ama87I CYCGRG 1 cut(s) 575
AoxI GGCC 3 cut(s) 70, 737, 1151
ApeKI GCWGC 1 cut(s) 1343
ApoI RAATTY 1 cut(s) 604
AspA2I CCTAGG 1 cut(s) 1172
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 737, 964
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 7 cut(s) 326, 692, 722, 835, 956, 1201, 1405
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 1 cut(s) 964
AvrII CCTAGG 1 cut(s) 1172
BalI TGGCCA 1 cut(s) 1153
BanII GRGCYC 1 cut(s) 1045
BbsI GAAGAC 2 cut(s) 478, 1386
BbvI GCAGC 1 cut(s) 1330
BccI CCATC 3 cut(s) 1095, 1265, 1282
BceAI ACGGC 4 cut(s) 196, 467, 724, 1331
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 2 cut(s) 362, 1173
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 2 cut(s) 345, 1344
BlnI CCTAGG 1 cut(s) 1172
BlpI GCTNAGC 1 cut(s) 981
BlsI GCNGC 2 cut(s) 346, 1345
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 964
BmeRI GACNNNNNGTC 1 cut(s) 1060
BmeT110I CYCGRG 1 cut(s) 575
BmgBI CACGTC 1 cut(s) 1254
BmgT120I GGNCC 2 cut(s) 737, 964
BmiI GGNNCC 4 cut(s) 54, 142, 965, 1044
BmrFI CCNGG 1 cut(s) 646
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 1 cut(s) 922
BmuI ACTGGG 1 cut(s) 743
BpiI GAAGAC 2 cut(s) 478, 1386
BpmI CTGGAG 1 cut(s) 1320
Bpu1102I GCTNAGC 1 cut(s) 981
BpuMI CCSGG 1 cut(s) 646
BsaHI GRCGYC 2 cut(s) 204, 1292
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 4 cut(s) 178, 529, 1172, 1194
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 4 cut(s) 455, 485, 1014, 1044
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 184, 375, 955, 1080, 1129
Bse1I ACTGG 2 cut(s) 749, 1056
BseDI CCNNGG 4 cut(s) 178, 529, 1172, 1194
BseGI GGATG 6 cut(s) 390, 417, 518, 937, 1106, 1315
BseLI CCNNNNNNNGG 6 cut(s) 68, 184, 375, 955, 1080, 1129
BseMII CTCAG 2 cut(s) 972, 1079
BseNI ACTGG 2 cut(s) 749, 1056
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 1330
BseYI CCCAGC 1 cut(s) 183
BshFI GGCC 3 cut(s) 72, 739, 1153
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 2 cut(s) 645, 761
BslFI GGGAC 4 cut(s) 224, 551, 856, 977
BslI CCNNNNNNNGG 6 cut(s) 68, 184, 375, 955, 1080, 1129
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 4 cut(s) 224, 551, 856, 977
BsnI GGCC 3 cut(s) 72, 739, 1153
Bso31I GGTCTC 1 cut(s) 475
BsoBI CYCGRG 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 1045
Bsp143I GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
Bsp1720I GCTNAGC 1 cut(s) 981
BspACI CCGC 5 cut(s) 100, 345, 474, 518, 1371
BspANI GGCC 3 cut(s) 72, 739, 1153
BspCNI CTCAG 2 cut(s) 973, 1080
BspHI TCATGA 2 cut(s) 28, 600
BspLI GGNNCC 4 cut(s) 54, 142, 965, 1044
BspPI GGATC 4 cut(s) 195, 211, 547, 1363
BspTNI GGTCTC 1 cut(s) 475
BsrI ACTGG 2 cut(s) 749, 1056
BssECI CCNNGG 4 cut(s) 178, 529, 1172, 1194
BssMI GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
BssNI GRCGYC 2 cut(s) 204, 1292
BssT1I CCWWGG 3 cut(s) 529, 1172, 1194
Bst4CI ACNGT 3 cut(s) 158, 1097, 1183
Bst6I CTCTTC 1 cut(s) 996
BstACI GRCGYC 2 cut(s) 204, 1292
BstC8I GCNNGC 4 cut(s) 664, 783, 787, 882
BstDEI CTNAG 2 cut(s) 981, 1088
BstDSI CCRYGG 1 cut(s) 178
BstEII GGTNACC 2 cut(s) 944, 1189
BstF5I GGATG 6 cut(s) 390, 417, 518, 937, 1106, 1315
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 7 cut(s) 190, 219, 555, 694, 828, 873, 1358
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
BstMWI GCNNNNNNNGC 1 cut(s) 1119
BstNSI RCATGY 3 cut(s) 124, 855, 1149
BstPI GGTNACC 2 cut(s) 944, 1189
BstSCI CCNGG 1 cut(s) 644
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 1330
BstV2I GAAGAC 2 cut(s) 478, 1386
BstX2I RGATCY 2 cut(s) 552, 1355
BstXI CCANNNNNNTGG 1 cut(s) 428
BstYI RGATCY 2 cut(s) 552, 1355
BsuRI GGCC 3 cut(s) 72, 739, 1153
BtgI CCRYGG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 1254
BtsCI GGATG 6 cut(s) 390, 417, 518, 937, 1106, 1315
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 2 cut(s) 1074, 1093
Cac8I GCNNGC 4 cut(s) 664, 783, 787, 882
CciI TCATGA 2 cut(s) 28, 600
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 2 cut(s) 737, 964
CseI GACGC 3 cut(s) 212, 281, 1281
Csp6I GTAC 5 cut(s) 536, 637, 685, 758, 997
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviQI GTAC 5 cut(s) 536, 637, 685, 758, 997
DdeI CTNAG 2 cut(s) 981, 1088
DpnI GATC 7 cut(s) 189, 218, 554, 693, 827, 872, 1357
DpnII GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
DrdI GACNNNNNNGTC 1 cut(s) 236
DriI GACNNNNNGTC 1 cut(s) 1060
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 1151
Eam1104I CTCTTC 1 cut(s) 996
Eam1105I GACNNNNNGTC 1 cut(s) 1060
EarI CTCTTC 1 cut(s) 996
EciI GGCGGA 3 cut(s) 463, 507, 1386
Eco130I CCWWGG 3 cut(s) 529, 1172, 1194
Eco24I GRGCYC 1 cut(s) 1045
Eco31I GGTCTC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 964
Eco88I CYCGRG 1 cut(s) 575
Eco91I GGTNACC 2 cut(s) 944, 1189
EcoO65I GGTNACC 2 cut(s) 944, 1189
EcoT14I CCWWGG 3 cut(s) 529, 1172, 1194
EcoT22I ATGCAT 2 cut(s) 857, 1115
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 3 cut(s) 529, 1172, 1194
FalI AAGNNNNNCTT 2 cut(s) 933, 965
FaqI GGGAC 4 cut(s) 224, 551, 856, 977
FauI CCCGC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 345, 1344
FokI GGATG 6 cut(s) 377, 404, 525, 944, 1113, 1322
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 2 cut(s) 345, 1344
FspBI CTAG 2 cut(s) 362, 1173
FspI TGCGCA 1 cut(s) 356
GlaI GCGC 1 cut(s) 356
GluI GCNGC 2 cut(s) 345, 1344
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 1320
HaeIII GGCC 3 cut(s) 72, 739, 1153
HapII CCGG 2 cut(s) 645, 761
HgaI GACGC 3 cut(s) 212, 281, 1281
HhaI GCGC 1 cut(s) 357
Hin1I GRCGYC 2 cut(s) 204, 1292
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HinfI GANTC 5 cut(s) 174, 398, 449, 507, 1090
HpaII CCGG 2 cut(s) 645, 761
HphI GGTGA 7 cut(s) 326, 692, 722, 835, 956, 1201, 1405
Hpy166II GTNNAC 2 cut(s) 130, 178
Hpy188I TCNGA 7 cut(s) 140, 173, 202, 512, 1034, 1089, 1165
Hpy188III TCNNGA 5 cut(s) 29, 544, 601, 841, 1299
Hpy8I GTNNAC 2 cut(s) 130, 178
Hpy99I CGWCG 3 cut(s) 275, 344, 1258
HpyAV CCTTC 7 cut(s) 300, 487, 497, 671, 1230, 1318, 1361
HpyCH4III ACNGT 3 cut(s) 158, 1097, 1183
HpyCH4IV ACGT 6 cut(s) 308, 426, 564, 687, 831, 1253
HpyCH4V TGCA 7 cut(s) 617, 855, 903, 1079, 1113, 1159, 1279
HpyF10VI GCNNNNNNNGC 1 cut(s) 1119
HpyF3I CTNAG 2 cut(s) 981, 1088
HpySE526I ACGT 6 cut(s) 308, 426, 564, 687, 831, 1253
Hsp92I GRCGYC 2 cut(s) 204, 1292
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
LmnI GCTCC 5 cut(s) 90, 174, 265, 877, 1048
Lsp1109I GCAGC 1 cut(s) 1330
LweI GCATC 1 cut(s) 922
MaeI CTAG 2 cut(s) 362, 1173
MaeII ACGT 6 cut(s) 308, 426, 564, 687, 831, 1253
MaeIII GTNAC 6 cut(s) 332, 944, 1091, 1189, 1249, 1264
MalI GATC 7 cut(s) 189, 218, 554, 693, 827, 872, 1357
MboI GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
MboII GAAGA 4 cut(s) 478, 1013, 1333, 1386
MflI RGATCY 2 cut(s) 552, 1355
MhlI GDGCHC 1 cut(s) 1045
MlsI TGGCCA 1 cut(s) 1153
MluCI AATT 1 cut(s) 604
MluNI TGGCCA 1 cut(s) 1153
MlyI GAGTC 4 cut(s) 183, 392, 458, 1099
MmeI TCCRAC 2 cut(s) 118, 873
Mox20I TGGCCA 1 cut(s) 1153
Mph1103I ATGCAT 2 cut(s) 857, 1115
MscI TGGCCA 1 cut(s) 1153
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 1153
MspI CCGG 2 cut(s) 645, 761
MspR9I CCNGG 1 cut(s) 646
MwoI GCNNNNNNNGC 1 cut(s) 1119
NciI CCSGG 1 cut(s) 646
NdeII GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
NlaIV GGNNCC 4 cut(s) 54, 142, 965, 1044
NmuCI GTSAC 6 cut(s) 332, 944, 1091, 1189, 1249, 1264
NsbI TGCGCA 1 cut(s) 356
NsiI ATGCAT 2 cut(s) 857, 1115
NspI RCATGY 3 cut(s) 124, 855, 1149
PaeR7I CTCGAG 1 cut(s) 575
PagI TCATGA 2 cut(s) 28, 600
PfeI GAWTC 1 cut(s) 507
PflMI CCANNNNNTGG 1 cut(s) 1080
PfoI TCCNGGA 1 cut(s) 644
PkrI GCNGC 2 cut(s) 346, 1345
PleI GAGTC 4 cut(s) 182, 392, 457, 1098
PpsI GAGTC 4 cut(s) 182, 392, 457, 1098
PspEI GGTNACC 2 cut(s) 944, 1189
PspFI CCCAGC 1 cut(s) 183
PspN4I GGNNCC 4 cut(s) 54, 142, 965, 1044
PspPI GGNCC 2 cut(s) 737, 964
PspXI VCTCGAGB 1 cut(s) 575
PsuI RGATCY 2 cut(s) 552, 1355
RsaI GTAC 5 cut(s) 537, 638, 686, 759, 998
RsaNI GTAC 5 cut(s) 536, 637, 685, 758, 997
RseI CAYNNNNRTG 1 cut(s) 225
SatI GCNGC 2 cut(s) 345, 1344
Sau3AI GATC 7 cut(s) 187, 216, 552, 691, 825, 870, 1355
Sau96I GGNCC 2 cut(s) 737, 964
SchI GAGTC 4 cut(s) 183, 392, 458, 1099
ScrFI CCNGG 1 cut(s) 646
SduI GDGCHC 1 cut(s) 1045
SfaNI GCATC 1 cut(s) 922
SfcI CTRYAG 1 cut(s) 435
Sfr274I CTCGAG 1 cut(s) 575
SinI GGWCC 1 cut(s) 964
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 1 cut(s) 604
SsiI CCGC 5 cut(s) 100, 345, 474, 518, 1371
SspMI CTAG 2 cut(s) 362, 1173
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 3 cut(s) 529, 1172, 1194
TaaI ACNGT 3 cut(s) 158, 1097, 1183
TaiI ACGT 6 cut(s) 311, 429, 567, 690, 834, 1256
TaqI TCGA 1 cut(s) 576
TaqII GACCGA 1 cut(s) 457
TasI AATT 1 cut(s) 604
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 507
TscAI CASTG 2 cut(s) 1081, 1100
TseFI GTSAC 6 cut(s) 332, 944, 1091, 1189, 1249, 1264
TseI GCWGC 1 cut(s) 1343
Tsp45I GTSAC 6 cut(s) 332, 944, 1091, 1189, 1249, 1264
TspDTI ATGAA 9 cut(s) 48, 223, 589, 617, 639, 819, 872, 904, 943
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 1081, 1100
Van91I CCANNNNNTGG 1 cut(s) 1080
VpaK11BI GGWCC 1 cut(s) 964
XapI RAATTY 1 cut(s) 604
XceI RCATGY 3 cut(s) 124, 855, 1149
XhoI CTCGAG 1 cut(s) 575
XmaJI CCTAGG 1 cut(s) 1172
XspI CTAG 2 cut(s) 362, 1173
Zsp2I ATGCAT 2 cut(s) 857, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.