Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005539

Physical Location & Seq

Genomic Coordinates Reverse (-)

20359968 .. 20360531

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACAGACGAGCAGATTAAGGAGCTGGCTATTGGGTTCGAACAAAGCAACCAGAAGTTCATTTGGGTGTTGAGGGATGCTGATAAAGGTGACCTTTTCATTGACGGAGATCAAGTTAGAAAGGCTGAGCTTCCAGAAGGGTACGAAGAGAAAGTGAAAGATAGGGGAGTAGTGGTCAGAGATTGGGCGCCCCAATTGGAGATTTTGTCCCACAAATCAACTGCTTGGTTTCTGAGTCACTGTGGATGGAACTCGTGCATGGAGAGCCTCACTTTGGGAGTGCCCATAGCATGTTGGCCGATGCACTCAGACCAACCGAGGAACACGACTTTGGTGACGAGGGTGCTCAAAGTTGGTCTCGTTATAAGGGATTGGGAGAGAAGGAACGAGCTTGTTACGTCGTCAATGATGAAAGATGGTGTGGAGAAACTGATGGGATCTGGAGAAGTGGATGAGATACGGAAGAAGGCAAGAGAGTTGGGTGCTGCCGTAAGAGGATCTATGGTGGAAGGTGGAGATTCTCGCGTGGAGTTGTCTTCTTTTATTGCTCACATCACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010073 GO:0010075 GO:0010083 GO:0010154 GO:0010380 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034645 GO:0034754 GO:0035251 GO:0035252 GO:0036211 GO:0040008 GO:0042285 GO:0042445 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0045926 GO:0046483 GO:0046527 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048439 GO:0048507 GO:0048509 GO:0048519 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050403 GO:0050404 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051193 GO:0051239 GO:0061458 GO:0065007 GO:0065008 GO:0070085 GO:0071704 GO:0090056 GO:0090567 GO:0090698 GO:0099402 GO:1901135 GO:1901137 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1905613 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00908 ko01110 map00908 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

187

Amino Acids

21.16

Weight (kDa)

5.65

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	1 - 113	4.8e-17	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24360
malus_domestica	MD08G1134000.v1.1 MD14G1076500.v1.1
prunus_persica	Prupe.7G055200_v2.0.a1
pyrus_communis	pycom12g06690 pycom14g06460
rosa_chinensis	RchiOBHm_Chr3g0483281 RchiOBHm_Chr3g0483301
rosa_laevigata	RLG00000023292 RLG00000023293
rosa_multiflora	Rmu_co8444503.1_g000001 Rmu_co8466309.1_g000001 Rmu_sc0003500.1_g000041 Rmu_sc0007550.1_g000013 Rmu_sc0007550.1_g000014 Rmu_sc0013906.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398430 Rroxscaffold_6G00398490 Rroxscaffold_6G00398500
rosa_rugosa	Rorug03G0205100.1
rosa_samantha	Rh3AG253600 Rh3AG253700 Rh3BG290700 Rh3CG287500 Rh3CG287600 Rh3DG283300 Rh3DG283400
rosa_wichuraiana	Rw3G022930 Rw3G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	1 cut(s)	525
AclWI	GGATC	2 cut(s)	445, 505
AcoI	YGGCCR	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	3 cut(s)	25, 130, 391
AluI	AGCT	3 cut(s)	25, 130, 391
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	445, 505
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	101, 346, 547
AsuII	TTCGAA	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	3 cut(s)	240, 410, 427
BceAI	ACGGC	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	191
BisI	GCNGC	1 cut(s)	486
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	2 cut(s)	67, 291
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	6 cut(s)	99, 129, 159, 189, 191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	3 cut(s)	82, 251, 457
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	3 cut(s)	117, 224, 321
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	298
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	285, 348
Bsp143I	GATC	3 cut(s)	109, 437, 497
Bsp1720I	GCTNAGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	3 cut(s)	118, 225, 320
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	445, 505
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	3 cut(s)	109, 437, 497
BssNI	GRCGYC	1 cut(s)	188
BssSI	CACGAG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	126, 233, 307
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	3 cut(s)	82, 251, 457
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	112, 440, 500
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	3 cut(s)	109, 437, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	2 cut(s)	437, 497
BstYI	RGATCY	2 cut(s)	437, 497
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	82, 251, 457
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	259, 291
CviJI	RGCY	7 cut(s)	25, 29, 125, 130, 267, 298, 391
CviKI_1	RGCY	7 cut(s)	25, 29, 125, 130, 267, 298, 391
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	126, 233, 307
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	3 cut(s)	111, 439, 499
DpnII	GATC	3 cut(s)	109, 437, 497
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
FaeI	CATG	2 cut(s)	262, 294
FaiI	YATR	5 cut(s)	260, 287, 292, 365, 503
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	258, 290
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	3 cut(s)	89, 258, 464
Fsp4HI	GCNGC	1 cut(s)	486
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	262, 294
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	235, 518
HphI	GGTGA	3 cut(s)	101, 346, 547
Hpy188I	TCNGA	3 cut(s)	179, 234, 310
Hpy188III	TCNNGA	2 cut(s)	134, 441
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	4 cut(s)	131, 375, 460, 503
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	2 cut(s)	258, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	3 cut(s)	126, 233, 307
HpySE526I	ACGT	1 cut(s)	398
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	262, 294
HspAI	GCGC	1 cut(s)	188
KasI	GGCGCC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	109, 437, 497
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	11, 65, 147, 426
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	67, 291
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	4 cut(s)	89, 236, 334, 394
MalI	GATC	3 cut(s)	111, 439, 499
MboI	GATC	3 cut(s)	109, 437, 497
MboII	GAAGA	3 cut(s)	158, 475, 528
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	437, 497
MhlI	GDGCHC	2 cut(s)	285, 348
MluCI	AATT	1 cut(s)	194
Mly113I	GGCGCC	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	66, 278, 312, 333, 488
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	188
NdeII	GATC	3 cut(s)	109, 437, 497
NlaIII	CATG	2 cut(s)	262, 294
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	3 cut(s)	89, 236, 334
NspI	RCATGY	1 cut(s)	294
NspV	TTCGAA	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	243
PluTI	GGCGCC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	365
PspEI	GGTNACC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	437, 497
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	3 cut(s)	109, 437, 497
SchI	GAGTC	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	285, 348
SetI	ASST	7 cut(s)	27, 91, 96, 132, 393, 401, 514
SfaNI	GCATC	2 cut(s)	67, 291
SfoI	GGCGCC	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	194
SspDI	GGCGCC	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	3 cut(s)	89, 236, 334
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	3 cut(s)	89, 236, 334
TspDTI	ATGAA	3 cut(s)	49, 88, 425
TspGWI	ACGGA	2 cut(s)	120, 475
TspRI	CASTG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.