Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005539

Physical Location & Seq

Genomic Coordinates Forward (+)

29097139 .. 29098167

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG287500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTTCCGTCATCCAAGACATTGGTTCTATCGTCAACGGCGAGTCTTACACCTTCCACACTGTCTCCGCCTTCGCCGTCTTCTTGTTCTTGTGGGAAGGAATTGGATGTCCACCTGAACTCGAAGGGGTACAAGTCAAGGGTAAAATCCCCGATACCACCCCGGGTCTGGAGGATTGCTTCCCCGACGAGTTCTTGAATTTTATTGTTACACAGTATGAATACACAGTGTACAACTCCGGGAACATCTACAACGCCAGCAGAACCATAGAAGGTGATTACATTGATTTACTGAACAAACTTGGTGACAACAAGAAGCATTGGGCTGTTGGGCCGTTCAACCCAGTTTTAGTACCGGAGAAAAAAGAAGGCTCAAATGATGGTAAAAGGCACGCTTGCTTGGAATGGCTTGATAAACAAGAACCAAACTCGGTGATCTACGTGTCGTTTGGGACAACAACATGCATGACAGACGAGCAGATCAAGGAGCTGGCTATTGGGTTGGAACAAAGCAACAAGAAGTTCATTTGGGTGTTGAGGGATGCTGATAAAGACCAACCGAGGAACACGACTTTGGTGACGAGGGTGCTCAAAGTTGGTCTCGTTATAAGGGATTGGGAGAGAAGGAACGAGCTTCTTACGTCGTCAATGGTGAAAGATGGTGTGGAGAAACTGATGGGATCTGGAGAAGTGGATGAGATAAGGAAGAAGGCAAGAGAGTTGGGTGCTGCCGTAAGAGGATCTATGGTGGAAGGTGGAGATTCTCGCGTGGAGTTGTCTTCTTTTATTGCTCACATCACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010073 GO:0010075 GO:0010083 GO:0010154 GO:0010380 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034645 GO:0034754 GO:0035251 GO:0035252 GO:0036211 GO:0040008 GO:0042285 GO:0042445 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0045926 GO:0046483 GO:0046527 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048439 GO:0048507 GO:0048509 GO:0048519 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050403 GO:0050404 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051193 GO:0051239 GO:0061458 GO:0065007 GO:0065008 GO:0070085 GO:0071704 GO:0090056 GO:0090567 GO:0090698 GO:0099402 GO:1901135 GO:1901137 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1905613 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00908 ko01110 map00908 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

268

Amino Acids

30.0

Weight (kDa)

5.11

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	1 - 115	1e-17	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24360
malus_domestica	MD08G1134000.v1.1 MD14G1076500.v1.1
prunus_persica	Prupe.7G055200_v2.0.a1
pyrus_communis	pycom12g06690 pycom14g06460
rosa_chinensis	RchiOBHm_Chr3g0483281 RchiOBHm_Chr3g0483301
rosa_laevigata	RLG00000023292 RLG00000023293
rosa_multiflora	Rmu_co8444503.1_g000001 Rmu_co8466309.1_g000001 Rmu_sc0003500.1_g000041 Rmu_sc0007550.1_g000013 Rmu_sc0007550.1_g000014 Rmu_sc0013906.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398430 Rroxscaffold_6G00398490 Rroxscaffold_6G00398500
rosa_rugosa	Rorug03G0205100.1
rosa_samantha	Rh3AG253600 Rh3AG253700 Rh3BG290700 Rh3CG287500 Rh3CG287600 Rh3DG283300 Rh3DG283400
rosa_wichuraiana	Rw3G022930 Rw3G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AccII	CGCG	1 cut(s)	768
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	2 cut(s)	688, 748
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	3 cut(s)	132, 233, 354
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	199, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	2 cut(s)	490, 634
AluI	AGCT	2 cut(s)	490, 634
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	2 cut(s)	70, 605
AlwI	GGATC	2 cut(s)	688, 748
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	3 cut(s)	164, 165, 241
AsuHPI	GGTGA	6 cut(s)	287, 317, 445, 589, 664, 790
AvaI	CYCGRG	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	73, 771
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	3 cut(s)	374, 653, 670
BceAI	ACGGC	4 cut(s)	55, 62, 319, 716
BcnI	CCSGG	3 cut(s)	164, 165, 241
BcoDI	GTCTC	2 cut(s)	70, 605
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	3 cut(s)	164, 165, 241
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	332
BmrFI	CCNGG	3 cut(s)	164, 165, 241
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	532
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	73, 771
BpmI	CTGGAG	2 cut(s)	191, 705
BpuMI	CCSGG	3 cut(s)	164, 165, 241
BsaAI	YACGTR	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	3 cut(s)	162, 163, 560
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	162, 163, 560
BseGI	GGATG	4 cut(s)	12, 113, 547, 700
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	715
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	164, 240, 356
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	70, 605
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	605
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	435, 480, 680, 740
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	768
BspPI	GGATC	2 cut(s)	688, 748
BspTNI	GGTCTC	1 cut(s)	605
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	162, 163, 560
BssMI	GATC	4 cut(s)	435, 480, 680, 740
Bst4CI	ACNGT	3 cut(s)	64, 216, 229
BstAUI	TGTACA	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	4 cut(s)	259, 393, 397, 492
BstF5I	GGATG	4 cut(s)	12, 113, 547, 700
BstFNI	CGCG	1 cut(s)	768
BstKTI	GATC	4 cut(s)	438, 483, 683, 743
BstMAI	GTCTC	2 cut(s)	70, 605
BstMBI	GATC	4 cut(s)	435, 480, 680, 740
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	3 cut(s)	162, 163, 239
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	2 cut(s)	73, 771
BstX2I	RGATCY	2 cut(s)	680, 740
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	2 cut(s)	680, 740
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	12, 113, 547, 700
BtsIMutI	CAGTG	2 cut(s)	60, 234
Cac8I	GCNNGC	4 cut(s)	259, 393, 397, 492
Cfr13I	GGNCC	1 cut(s)	332
Cfr9I	CCCGGG	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	131, 232, 353
CviAII	CATG	2 cut(s)	462, 466
CviJI	RGCY	8 cut(s)	5, 326, 334, 372, 409, 490, 494, 634
CviKI_1	RGCY	8 cut(s)	5, 326, 334, 372, 409, 490, 494, 634
CviQI	GTAC	3 cut(s)	131, 232, 353
DpnI	GATC	4 cut(s)	437, 482, 682, 742
DpnII	GATC	4 cut(s)	435, 480, 680, 740
EciI	GGCGGA	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	467
FaeI	CATG	2 cut(s)	465, 469
FaiI	YATR	6 cut(s)	219, 269, 463, 467, 608, 746
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	2 cut(s)	461, 465
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	3 cut(s)	120, 554, 707
Fsp4HI	GCNGC	1 cut(s)	729
GluI	GCNGC	1 cut(s)	729
GsuI	CTGGAG	2 cut(s)	191, 705
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	3 cut(s)	164, 240, 356
Hin1II	CATG	2 cut(s)	465, 469
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	44, 761
HpaII	CCGG	3 cut(s)	164, 240, 356
HphI	GGTGA	6 cut(s)	287, 317, 445, 589, 664, 790
Hpy166II	GTNNAC	3 cut(s)	37, 113, 232
Hpy188III	TCNNGA	3 cut(s)	170, 196, 684
Hpy8I	GTNNAC	3 cut(s)	37, 113, 232
Hpy99I	CGWCG	2 cut(s)	191, 646
HpyAV	CCTTC	9 cut(s)	64, 82, 92, 119, 266, 362, 618, 703, 746
HpyCH4III	ACNGT	3 cut(s)	64, 216, 229
HpyCH4IV	ACGT	2 cut(s)	441, 641
HpyCH4V	TGCA	1 cut(s)	465
HpySE526I	ACGT	2 cut(s)	441, 641
Hsp92II	CATG	2 cut(s)	465, 469
Kzo9I	GATC	4 cut(s)	435, 480, 680, 740
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	9 cut(s)	129, 155, 177, 253, 271, 357, 369, 476, 669
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	2 cut(s)	441, 641
MaeIII	GTNAC	3 cut(s)	208, 305, 577
MalI	GATC	4 cut(s)	437, 482, 682, 742
MboI	GATC	4 cut(s)	435, 480, 680, 740
MboII	GAAGA	3 cut(s)	73, 718, 771
MflI	RGATCY	2 cut(s)	680, 740
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	2 cut(s)	102, 199
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	5 cut(s)	166, 531, 555, 576, 731
Mph1103I	ATGCAT	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	3 cut(s)	164, 240, 356
MspR9I	CCNGG	3 cut(s)	164, 165, 241
MvnI	CGCG	1 cut(s)	768
NciI	CCSGG	3 cut(s)	164, 165, 241
NdeII	GATC	4 cut(s)	435, 480, 680, 740
NlaIII	CATG	2 cut(s)	465, 469
NmuCI	GTSAC	2 cut(s)	305, 577
NsiI	ATGCAT	1 cut(s)	467
NspI	RCATGY	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	761
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	442
PsiI	TTATAA	1 cut(s)	608
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	680, 740
RsaI	GTAC	3 cut(s)	132, 233, 354
RsaNI	GTAC	3 cut(s)	131, 232, 353
RseI	CAYNNNNRTG	1 cut(s)	530
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	4 cut(s)	435, 480, 680, 740
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	3 cut(s)	164, 165, 241
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	8 cut(s)	56, 118, 277, 444, 492, 636, 644, 757
SfaNI	GCATC	1 cut(s)	532
SmaI	CCCGGG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	2 cut(s)	102, 199
SsiI	CCGC	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	162, 163, 239
TaaI	ACNGT	3 cut(s)	64, 216, 229
TaiI	ACGT	2 cut(s)	444, 644
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	102, 199
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	761
TscAI	CASTG	2 cut(s)	67, 234
TseFI	GTSAC	2 cut(s)	305, 577
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	305, 577
TspDTI	ATGAA	2 cut(s)	234, 514
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	2 cut(s)	67, 234
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmaI	CCCGGG	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.