Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005539

Physical Location & Seq

Genomic Coordinates Forward (+)

28861751 .. 28863181

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG283300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTTCCAACCACCAAAACAATGCCCCTAATGAAGTGGTGGTTGTCATGGTTCCTTTACCGGCACAAGGCCACCTCAACCAGCTCCTCCACCTCTCCCGCCTCATCTCCGCCTACAACATCCCCGTCCACTTTGTCGGAACCCCCAATCACAACCGTCAAGCCAAGGTCCGAGTCCACGGCTGGGATCAAACCTCAGACGTCAAAAACACGATCCACTTCCATGACTTCATCATCCCTCCTGTCTTTTGCCCTCCTCCCAACCCCAATGCACCAAACAAGTTCCCTTCTCATCTCCTACCCACTTTTGAAGCCACCACCCATCTCCGCCGCCCTGTCGCCGCACTTCTACGAAATCTAGCCTCCCAAACAAGGCGAGTGGTGGTCATCCACGACTCCATCATGGCTTCCGTCATCCAAGACATTGGTTCTATCGTCAACGGCGAGTCTTACACCTTCCACACTGTCTCCGCCTTCGCCGTCTTCTTGTTCTTGTGGGAAGGAATTGGATGTCCACCTGAACTCGAAGGGGTACAAGTCAAGGGTAAAATCCCCGATACCACCCCGGGTCTGGAGGATTGCTTCCCGGATGAGTTCTTGAATTTTATTGTTACACAGTATGAATACACAGTGTACAACTCCGGGAACATCTACAACGCCAGCAGAACCATAGAAGGTGATTACATTGATTTACTGAACAAACTTGGTGACAACAAGAAGCATTGGGCTGTTGGGCCGTTCAACCCAGTTTTAGTACCGGAGAAAAAAGAAGGCTCAAATGATGGTAAAAGGCACGCTTGCTTGGAATGGCTTGATAAACAAGAACCAAACTCGGTGATCTACGTGTCGTTTGGGACAACAACATGCATGACAGACGAGCAGATCAAGGAGCTGGCTATTGGGTTGGAACAAAGCAACAAGAAGTTCATTTGGGTGTTGAGGGATGCTGATAAAGGTGACCTTTTCATTGACGGAGACCAAGTTAGAAAGGCTGAGCTTCCAGAAGGGAACGAGCTTCTTACGTCGTCAATGGTGAAAGATGGTGTGGAGAAACTGATGGGATCTGGAGAAGTGGATGAGATAAGGAAGAAGGCAAGAGAGTTGGGTGCTGCCGTAAGAGGATCTATGGTGGAAGGTGGAGATTCTCGCGTGGAGTTGTCTTCTTTTATTGCTCACATCACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010073 GO:0010075 GO:0010083 GO:0010154 GO:0010380 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034645 GO:0034754 GO:0035251 GO:0035252 GO:0036211 GO:0040008 GO:0042285 GO:0042445 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0045926 GO:0046483 GO:0046527 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048439 GO:0048507 GO:0048509 GO:0048519 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050403 GO:0050404 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051193 GO:0051239 GO:0061458 GO:0065007 GO:0065008 GO:0070085 GO:0071704 GO:0090056 GO:0090567 GO:0090698 GO:0099402 GO:1901135 GO:1901137 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1905613 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00908 ko01110 map00908 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

395

Amino Acids

43.94

Weight (kDa)

5.84

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	12 - 249	2.2e-80	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24360
malus_domestica	MD08G1134000.v1.1 MD14G1076500.v1.1
prunus_persica	Prupe.7G055200_v2.0.a1
pyrus_communis	pycom12g06690 pycom14g06460
rosa_chinensis	RchiOBHm_Chr3g0483281 RchiOBHm_Chr3g0483301
rosa_laevigata	RLG00000023292 RLG00000023293
rosa_multiflora	Rmu_co8444503.1_g000001 Rmu_co8466309.1_g000001 Rmu_sc0003500.1_g000041 Rmu_sc0007550.1_g000013 Rmu_sc0007550.1_g000014 Rmu_sc0013906.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398430 Rroxscaffold_6G00398490 Rroxscaffold_6G00398500
rosa_rugosa	Rorug03G0205100.1
rosa_samantha	Rh3AG253600 Rh3AG253700 Rh3BG290700 Rh3CG287500 Rh3CG287600 Rh3DG283300 Rh3DG283400
rosa_wichuraiana	Rw3G022930 Rw3G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccII	CGCG	1 cut(s)	1149
AciI	CCGC	6 cut(s)	100, 111, 328, 331, 342, 471
AclWI	GGATC	4 cut(s)	195, 208, 1069, 1129
AcsI	RAATTY	1 cut(s)	601
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	3 cut(s)	534, 635, 756
AfiI	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	3 cut(s)	311, 601, 742
AluBI	AGCT	4 cut(s)	85, 892, 997, 1015
AluI	AGCT	4 cut(s)	85, 892, 997, 1015
Alw26I	GTCTC	2 cut(s)	472, 969
AlwI	GGATC	4 cut(s)	195, 208, 1069, 1129
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	70, 734
ApeKI	GCWGC	1 cut(s)	1109
ApoI	RAATTY	1 cut(s)	601
AspS9I	GGNCC	2 cut(s)	169, 734
AsuC2I	CCSGG	4 cut(s)	566, 567, 587, 643
AsuHPI	GGTGA	6 cut(s)	689, 719, 847, 968, 1045, 1171
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	169
BbsI	GAAGAC	2 cut(s)	475, 1152
BbvI	GCAGC	1 cut(s)	1096
BccI	CCATC	5 cut(s)	330, 407, 776, 1034, 1051
BceAI	ACGGC	5 cut(s)	196, 457, 464, 721, 1097
BcnI	CCSGG	4 cut(s)	566, 567, 587, 643
BcoDI	GTCTC	2 cut(s)	472, 969
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	3 cut(s)	331, 342, 1110
BlpI	GCTNAGC	1 cut(s)	993
BlsI	GCNGC	3 cut(s)	332, 343, 1111
Bme1390I	CCNGG	4 cut(s)	566, 567, 587, 643
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	169, 734
BmiI	GGNNCC	2 cut(s)	54, 142
BmrFI	CCNGG	4 cut(s)	566, 567, 587, 643
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	1 cut(s)	934
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	2 cut(s)	475, 1152
BpmI	CTGGAG	2 cut(s)	593, 1086
Bpu1102I	GCTNAGC	1 cut(s)	993
BpuMI	CCSGG	4 cut(s)	566, 567, 587, 643
BsaAI	YACGTR	1 cut(s)	844
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	969
BsaJI	CCNNGG	4 cut(s)	165, 178, 564, 565
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 482, 966, 996
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	746
BseDI	CCNNGG	4 cut(s)	165, 178, 564, 565
BseGI	GGATG	8 cut(s)	120, 234, 387, 414, 515, 595, 949, 1081
BseLI	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
BseMII	CTCAG	2 cut(s)	210, 984
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	2 cut(s)	77, 246
BseXI	GCAGC	1 cut(s)	1096
BseYI	CCCAGC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	1149
BshFI	GGCC	2 cut(s)	72, 736
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	5 cut(s)	62, 566, 587, 642, 758
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
BsmAI	GTCTC	2 cut(s)	472, 969
BsmFI	GGGAC	1 cut(s)	868
BsnI	GGCC	2 cut(s)	72, 736
Bso31I	GGTCTC	1 cut(s)	969
BsoBI	CYCGRG	1 cut(s)	565
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
Bsp1720I	GCTNAGC	1 cut(s)	993
BspACI	CCGC	6 cut(s)	100, 111, 328, 331, 342, 471
BspANI	GGCC	2 cut(s)	72, 736
BspCNI	CTCAG	2 cut(s)	209, 985
BspFNI	CGCG	1 cut(s)	1149
BspLI	GGNNCC	2 cut(s)	54, 142
BspPI	GGATC	4 cut(s)	195, 208, 1069, 1129
BspTNI	GGTCTC	1 cut(s)	969
BsrFI	RCCGGY	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	4 cut(s)	165, 178, 564, 565
BssMI	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	4 cut(s)	158, 466, 618, 631
BstACI	GRCGYC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	633
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	4 cut(s)	661, 795, 799, 894
BstDEI	CTNAG	2 cut(s)	196, 993
BstDSI	CCRYGG	1 cut(s)	178
BstEII	GGTNACC	1 cut(s)	956
BstF5I	GGATG	8 cut(s)	120, 234, 387, 414, 515, 595, 949, 1081
BstFNI	CGCG	1 cut(s)	1149
BstKTI	GATC	6 cut(s)	190, 216, 840, 885, 1064, 1124
BstMAI	GTCTC	2 cut(s)	472, 969
BstMBI	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
BstNSI	RCATGY	1 cut(s)	867
BstPI	GGTNACC	1 cut(s)	956
BstSCI	CCNGG	4 cut(s)	564, 565, 585, 641
BstUI	CGCG	1 cut(s)	1149
BstV1I	GCAGC	1 cut(s)	1096
BstV2I	GAAGAC	2 cut(s)	475, 1152
BstX2I	RGATCY	2 cut(s)	1061, 1121
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	1061, 1121
BsuRI	GGCC	2 cut(s)	72, 736
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	8 cut(s)	120, 234, 387, 414, 515, 595, 949, 1081
BtsIMutI	CAGTG	2 cut(s)	462, 636
Cac8I	GCNNGC	4 cut(s)	661, 795, 799, 894
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	169, 734
Cfr9I	CCCGGG	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	533, 634, 755
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	5 cut(s)	49, 224, 403, 864, 868
CviQI	GTAC	3 cut(s)	533, 634, 755
DdeI	CTNAG	2 cut(s)	196, 993
DpnI	GATC	6 cut(s)	189, 215, 839, 884, 1063, 1123
DpnII	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
EciI	GGCGGA	3 cut(s)	100, 317, 460
Eco130I	CCWWGG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	969
Eco47I	GGWCC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	565
Eco91I	GGTNACC	1 cut(s)	956
EcoO65I	GGTNACC	1 cut(s)	956
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	52, 227, 406, 867, 871
FaiI	YATR	8 cut(s)	50, 225, 404, 621, 671, 865, 869, 1127
FalI	AAGNNNNNCTT	4 cut(s)	781, 813, 945, 977
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	5 cut(s)	48, 223, 402, 863, 867
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	331, 342, 1110
FokI	GGATG	8 cut(s)	107, 221, 374, 401, 522, 602, 956, 1088
Fsp4HI	GCNGC	3 cut(s)	331, 342, 1110
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	3 cut(s)	331, 342, 1110
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	2 cut(s)	593, 1086
HaeIII	GGCC	2 cut(s)	72, 736
HapII	CCGG	5 cut(s)	62, 566, 587, 642, 758
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	52, 227, 406, 867, 871
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	4 cut(s)	174, 395, 446, 1142
HpaII	CCGG	5 cut(s)	62, 566, 587, 642, 758
HphI	GGTGA	6 cut(s)	689, 719, 847, 968, 1045, 1171
Hpy166II	GTNNAC	5 cut(s)	130, 178, 439, 515, 634
Hpy188I	TCNGA	3 cut(s)	140, 173, 199
Hpy188III	TCNNGA	4 cut(s)	572, 598, 1001, 1065
Hpy8I	GTNNAC	5 cut(s)	130, 178, 439, 515, 634
Hpy99I	CGWCG	1 cut(s)	1027
HpyCH4III	ACNGT	4 cut(s)	158, 466, 618, 631
HpyCH4IV	ACGT	3 cut(s)	201, 843, 1022
HpyCH4V	TGCA	2 cut(s)	272, 867
HpyF3I	CTNAG	2 cut(s)	196, 993
HpySE526I	ACGT	3 cut(s)	201, 843, 1022
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	52, 227, 406, 867, 871
Kzo9I	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
LmnI	GCTCC	2 cut(s)	90, 889
Lsp1109I	GCAGC	1 cut(s)	1096
LweI	GCATC	1 cut(s)	934
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	3 cut(s)	201, 843, 1022
MaeIII	GTNAC	3 cut(s)	610, 707, 956
MalI	GATC	6 cut(s)	189, 215, 839, 884, 1063, 1123
MboI	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
MboII	GAAGA	3 cut(s)	475, 1099, 1152
MflI	RGATCY	2 cut(s)	1061, 1121
MluCI	AATT	2 cut(s)	504, 601
MlyI	GAGTC	3 cut(s)	183, 389, 455
MmeI	TCCRAC	3 cut(s)	33, 118, 885
Mph1103I	ATGCAT	1 cut(s)	869
MslI	CAYNNNNRTG	2 cut(s)	222, 932
MspI	CCGG	5 cut(s)	62, 566, 587, 642, 758
MspR9I	CCNGG	4 cut(s)	566, 567, 587, 643
MvnI	CGCG	1 cut(s)	1149
NciI	CCSGG	4 cut(s)	566, 567, 587, 643
NdeII	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
NlaIII	CATG	5 cut(s)	52, 227, 406, 867, 871
NlaIV	GGNNCC	2 cut(s)	54, 142
NmuCI	GTSAC	2 cut(s)	707, 956
NsiI	ATGCAT	1 cut(s)	869
NspI	RCATGY	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	1142
PfoI	TCCNGGA	2 cut(s)	585, 641
PkrI	GCNGC	3 cut(s)	332, 343, 1111
PleI	GAGTC	3 cut(s)	182, 389, 454
PpsI	GAGTC	3 cut(s)	182, 389, 454
Ppu21I	YACGTR	1 cut(s)	844
PspEI	GGTNACC	1 cut(s)	956
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	54, 142
PspPI	GGNCC	2 cut(s)	169, 734
PsuI	RGATCY	2 cut(s)	1061, 1121
RsaI	GTAC	3 cut(s)	534, 635, 756
RsaNI	GTAC	3 cut(s)	533, 634, 755
RseI	CAYNNNNRTG	2 cut(s)	222, 932
SatI	GCNGC	3 cut(s)	331, 342, 1110
Sau3AI	GATC	6 cut(s)	187, 213, 837, 882, 1061, 1121
Sau96I	GGNCC	2 cut(s)	169, 734
SchI	GAGTC	3 cut(s)	183, 389, 455
ScrFI	CCNGG	4 cut(s)	566, 567, 587, 643
SfaNI	GCATC	1 cut(s)	934
SinI	GGWCC	1 cut(s)	169
SmaI	CCCGGG	1 cut(s)	567
SmiMI	CAYNNNNRTG	2 cut(s)	222, 932
Sse9I	AATT	2 cut(s)	504, 601
SsiI	CCGC	6 cut(s)	100, 111, 328, 331, 342, 471
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	4 cut(s)	564, 565, 585, 641
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	158, 466, 618, 631
TaiI	ACGT	3 cut(s)	204, 846, 1025
TaqI	TCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	504, 601
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	2 cut(s)	333, 344
TfiI	GAWTC	1 cut(s)	1142
TscAI	CASTG	2 cut(s)	469, 636
TseFI	GTSAC	2 cut(s)	707, 956
TseI	GCWGC	1 cut(s)	1109
Tsp45I	GTSAC	2 cut(s)	707, 956
TspDTI	ATGAA	5 cut(s)	48, 220, 636, 916, 955
TspGWI	ACGGA	2 cut(s)	400, 987
TspMI	CCCGGG	1 cut(s)	565
TspRI	CASTG	2 cut(s)	469, 636
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmaI	CCCGGG	1 cut(s)	565
XspI	CTAG	1 cut(s)	359
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.