Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003500.1

Orthogroup ID

OG0005539

Physical Location & Seq

Genomic Coordinates Reverse (-)

158940 .. 159800

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003500.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ctggaggattgcttccccgacgacttcttgaattttattgttacacagtatgaatacacagtgtacaactccgggaacatctacaacgccagcagaaccatagaaggtgattacattgatttactgaacaaacttggtgataacaagaagcattgggctgttgggccgttcaacccagttttagtaccggagaaaaaagaaggctcaaatgatggtaaaaggcacgcttgcttggaatggcttgataaacaagaaccaaactcggtgatctacgtgtcgtttgggacaacaacatgcatgacagacgagcagatcaaggagctggctattgggttggaacaaagcaacaagaagttcatttgggtgttgagggatgctgataaaggtgaccttttcattgacggagaccaagttagaaaggctgagcttccagaagggtacgaagagaaagtgaaagataggggagcagtggtcagagattgggccccccaattggagattttgtcccacaaatcaactgcttggtttctgagtcactgtggatggaactcgtgcatggagagcctcactttgggagtgcccatagcatgttggccgatgcactcagaccaaccgaggaacacgactttggtgacgagggtgctcaaagttggtctcgttataagggattgggagagaaggaacgagcttcttacgtcgtcaatggtgaaagatggtgtggagaaactgatgggatctggagaagtggatgagataaggaagaaggcaagagagttgggtgctgccgtaagaggatctatggtggaaggtggagattctcgcgtggagttgtcttcttttattgctcacatcaccagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010073 GO:0010075 GO:0010083 GO:0010154 GO:0010380 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034645 GO:0034754 GO:0035251 GO:0035252 GO:0036211 GO:0040008 GO:0042285 GO:0042445 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0045926 GO:0046483 GO:0046527 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048439 GO:0048507 GO:0048509 GO:0048519 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050403 GO:0050404 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051193 GO:0051239 GO:0061458 GO:0065007 GO:0065008 GO:0070085 GO:0071704 GO:0090056 GO:0090567 GO:0090698 GO:0099402 GO:1901135 GO:1901137 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1905613 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00908 ko01110 map00908 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

286

Amino Acids

32.37

Weight (kDa)

5.31

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24360
malus_domestica	MD08G1134000.v1.1 MD14G1076500.v1.1
prunus_persica	Prupe.7G055200_v2.0.a1
pyrus_communis	pycom12g06690 pycom14g06460
rosa_chinensis	RchiOBHm_Chr3g0483281 RchiOBHm_Chr3g0483301
rosa_laevigata	RLG00000023292 RLG00000023293
rosa_multiflora	Rmu_co8444503.1_g000001 Rmu_co8466309.1_g000001 Rmu_sc0003500.1_g000041 Rmu_sc0007550.1_g000013 Rmu_sc0007550.1_g000014 Rmu_sc0013906.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398430 Rroxscaffold_6G00398490 Rroxscaffold_6G00398500
rosa_rugosa	Rorug03G0205100.1
rosa_samantha	Rh3AG253600 Rh3AG253700 Rh3BG290700 Rh3CG287500 Rh3CG287600 Rh3DG283300 Rh3DG283400
rosa_wichuraiana	Rw3G022930 Rw3G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
AccII	CGCG	1 cut(s)	822
AclWI	GGATC	2 cut(s)	742, 802
AcoI	YGGCCR	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	3 cut(s)	65, 186, 440
AfiI	CCNNNNNNNGG	2 cut(s)	493, 571
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	31, 172
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	3 cut(s)	322, 427, 688
AluI	AGCT	3 cut(s)	322, 427, 688
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	2 cut(s)	399, 659
AlwI	GGATC	2 cut(s)	742, 802
AoxI	GGCC	3 cut(s)	164, 483, 593
ApaI	GGGCCC	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	164, 483, 484
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	7 cut(s)	119, 149, 277, 398, 643, 718, 844
BaeGI	GKGCMC	2 cut(s)	487, 582
BanII	GRGCYC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	4 cut(s)	206, 537, 707, 724
BceAI	ACGGC	2 cut(s)	151, 770
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	399, 659
BisI	GCNGC	1 cut(s)	783
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	164, 483, 484
BmiI	GGNNCC	2 cut(s)	485, 486
BmrFI	CCNGG	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	364, 588
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	2 cut(s)	23, 759
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	274
BsaI	GGTCTC	2 cut(s)	399, 659
BsaJI	CCNNGG	1 cut(s)	614
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	6 cut(s)	396, 426, 456, 486, 488, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 571
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	3 cut(s)	379, 548, 754
BseLI	CCNNNNNNNGG	2 cut(s)	493, 571
BseMII	CTCAG	3 cut(s)	414, 521, 618
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	2 cut(s)	487, 582
BseXI	GCAGC	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	822
BshFI	GGCC	3 cut(s)	166, 485, 595
BsiHKAI	GWGCWC	1 cut(s)	645
BsiSI	CCGG	2 cut(s)	72, 188
BslFI	GGGAC	2 cut(s)	298, 490
BslI	CCNNNNNNNGG	2 cut(s)	493, 571
BsmAI	GTCTC	2 cut(s)	399, 659
BsmFI	GGGAC	2 cut(s)	298, 490
BsnI	GGCC	3 cut(s)	166, 485, 595
Bso31I	GGTCTC	2 cut(s)	399, 659
Bsp120I	GGGCCC	1 cut(s)	483
Bsp1286I	GDGCHC	3 cut(s)	487, 582, 645
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	267, 312, 734, 794
Bsp1720I	GCTNAGC	1 cut(s)	423
BspANI	GGCC	3 cut(s)	166, 485, 595
BspCNI	CTCAG	3 cut(s)	415, 522, 617
BspFNI	CGCG	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	485, 486
BspPI	GGATC	2 cut(s)	742, 802
BspTNI	GGTCTC	2 cut(s)	399, 659
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	4 cut(s)	267, 312, 734, 794
BssSI	CACGAG	1 cut(s)	550
Bst2BI	CACGAG	1 cut(s)	550
Bst4CI	ACNGT	3 cut(s)	48, 61, 539
Bst6I	CTCTTC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	4 cut(s)	91, 225, 229, 324
BstDEI	CTNAG	3 cut(s)	423, 530, 604
BstEII	GGTNACC	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	379, 548, 754
BstFNI	CGCG	1 cut(s)	822
BstKTI	GATC	4 cut(s)	270, 315, 737, 797
BstMAI	GTCTC	2 cut(s)	399, 659
BstMBI	GATC	4 cut(s)	267, 312, 734, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	561
BstNSI	RCATGY	2 cut(s)	297, 591
BstPI	GGTNACC	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	71
BstSLI	GKGCMC	2 cut(s)	487, 582
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	1 cut(s)	769
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	2 cut(s)	734, 794
BstYI	RGATCY	2 cut(s)	734, 794
BsuRI	GGCC	3 cut(s)	166, 485, 595
BtsCI	GGATG	3 cut(s)	379, 548, 754
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	3 cut(s)	66, 474, 535
Cac8I	GCNNGC	4 cut(s)	91, 225, 229, 324
Cfr13I	GGNCC	3 cut(s)	164, 483, 484
Csp6I	GTAC	3 cut(s)	64, 185, 439
CviAII	CATG	4 cut(s)	294, 298, 556, 588
CviQI	GTAC	3 cut(s)	64, 185, 439
DdeI	CTNAG	3 cut(s)	423, 530, 604
DpnI	GATC	4 cut(s)	269, 314, 736, 796
DpnII	GATC	4 cut(s)	267, 312, 734, 794
EaeI	YGGCCR	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	487
Eco31I	GGTCTC	2 cut(s)	399, 659
Eco91I	GGTNACC	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	487
FaeI	CATG	4 cut(s)	297, 301, 559, 591
FaiI	YATR	9 cut(s)	51, 101, 295, 299, 557, 584, 589, 662, 800
FalI	AAGNNNNNCTT	4 cut(s)	211, 243, 375, 407
FaqI	GGGAC	2 cut(s)	298, 490
FatI	CATG	4 cut(s)	293, 297, 555, 587
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	3 cut(s)	386, 555, 761
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	783
GluI	GCNGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	23, 759
HaeIII	GGCC	3 cut(s)	166, 485, 595
HapII	CCGG	2 cut(s)	72, 188
Hin1II	CATG	4 cut(s)	297, 301, 559, 591
HinfI	GANTC	2 cut(s)	532, 815
HpaII	CCGG	2 cut(s)	72, 188
HphI	GGTGA	7 cut(s)	119, 149, 277, 398, 643, 718, 844
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	476, 531, 607
Hpy188III	TCNNGA	3 cut(s)	28, 431, 738
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	23, 700
HpyAV	CCTTC	6 cut(s)	98, 194, 428, 672, 757, 800
HpyCH4III	ACNGT	3 cut(s)	48, 61, 539
HpyCH4IV	ACGT	2 cut(s)	273, 695
HpyCH4V	TGCA	3 cut(s)	297, 555, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	561
HpyF3I	CTNAG	3 cut(s)	423, 530, 604
HpySE526I	ACGT	2 cut(s)	273, 695
Hsp92II	CATG	4 cut(s)	297, 301, 559, 591
Kzo9I	GATC	4 cut(s)	267, 312, 734, 794
LmnI	GCTCC	2 cut(s)	319, 464
LpnPI	CCDG	7 cut(s)	85, 103, 189, 201, 308, 444, 723
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	2 cut(s)	364, 588
MaeII	ACGT	2 cut(s)	273, 695
MaeIII	GTNAC	4 cut(s)	40, 386, 533, 631
MalI	GATC	4 cut(s)	269, 314, 736, 796
MboI	GATC	4 cut(s)	267, 312, 734, 794
MboII	GAAGA	3 cut(s)	455, 772, 825
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	2 cut(s)	734, 794
MhlI	GDGCHC	3 cut(s)	487, 582, 645
MluCI	AATT	2 cut(s)	31, 491
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	363, 575, 609, 630, 785
Mph1103I	ATGCAT	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	2 cut(s)	72, 188
MspR9I	CCNGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	822
MwoI	GCNNNNNNNGC	1 cut(s)	561
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	267, 312, 734, 794
NlaIII	CATG	4 cut(s)	297, 301, 559, 591
NlaIV	GGNNCC	2 cut(s)	485, 486
NmuCI	GTSAC	3 cut(s)	386, 533, 631
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	2 cut(s)	297, 591
PfeI	GAWTC	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Ppu21I	YACGTR	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	662
PspEI	GGTNACC	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	485, 486
PspOMI	GGGCCC	1 cut(s)	483
PspPI	GGNCC	3 cut(s)	164, 483, 484
PsuI	RGATCY	2 cut(s)	734, 794
RsaI	GTAC	3 cut(s)	65, 186, 440
RsaNI	GTAC	3 cut(s)	64, 185, 439
RseI	CAYNNNNRTG	1 cut(s)	362
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	4 cut(s)	267, 312, 734, 794
Sau96I	GGNCC	3 cut(s)	164, 483, 484
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	3 cut(s)	487, 582, 645
SetI	ASST	9 cut(s)	109, 276, 324, 388, 393, 429, 690, 698, 811
SfaNI	GCATC	2 cut(s)	364, 588
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	31, 491
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	3 cut(s)	48, 61, 539
TaiI	ACGT	2 cut(s)	276, 698
TasI	AATT	2 cut(s)	31, 491
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	815
TscAI	CASTG	3 cut(s)	66, 474, 542
TseFI	GTSAC	3 cut(s)	386, 533, 631
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	3 cut(s)	386, 533, 631
TspDTI	ATGAA	3 cut(s)	66, 346, 385
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	66, 474, 542
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	2 cut(s)	297, 591
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.