Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005539

Physical Location & Seq

Genomic Coordinates Forward (+)

27536890 .. 27538320

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCTTCCAACCACCAAAACAATGCCCCTAATGAAGTGGTGGTTGTCATGGTTCCTTTACCGGCACAAGGCCACCTCAACCAGCTTCTCCACCTCTCCCGCCTCATCTCCGCGTACAACATCCCCGTCCACTTTGTCGGAACCCCCAATCACAACCGTCAAGCCAAGGTCCGAGTCCACGGCTGGGATCAAACCTCAGACGTCAAAAACACGATCCACTTCCATGACTTCATCATCCCTCCTGTCTTTTGCCCTCCTCCCAACCCCAATGCACCAAACAAGTTCCCTTCTCATCTCCTACCCACATTTGAAGCCACCACCCATCTCCGCCACCCTGTCGCCGCACTTCTGCGAAATCTAGCCTCCCAAACAAGGCGAGTGGTGGTCATCCACGACTCCATCATGGCTTCCGTCATCCAAGACATTGGTTCTATCGTCAACGGCGAGTCTTACACCTTCCACACTGTCTCCGCCTTCGCCGTCTTCTTGTTCTTGTGGGAAGGAATTGGATGTCCACCTGAACTCGAAGGGATACGAGTCAAGAGTAAAATCCCCGATACCACCCCAGGTCTGGAGGATTGCTTCCCCGACGAGTTCTTGAATTTTATTGTTACACAGTATGAATACACAGTGTACAACTCCGGGAACATCTACAACGCCAGCAGAACCATAGAAGGTGATTACATTGATTTACTGAACAAACTTGGTGATAACAAGAAGCATTGGGCTGTTGGGCCTTTCAACCCAGTTTTAGTACCGGAGAAAAAAGAAGGCTCAAATGATGGTAAAAGGCACGCTTGCTTGGAATGGCTTGATAAACAAGAACGAAACTCGGTGATCTACGTGTCGTTTGGGACAACAACGTGCATGACAGACGAGCAGATCAAGGAGCTGGCTATTGGGTTGGAACAAAGCAACCAGAAGTTCATTTGGGTGTTGAGGGATGCTGATAAAGACCAACCGAGGAACACGACTTTGGTGACGAGGGTGCTCAAAGTTGGTCTCGTTATAAGGGATTGGGAGAGAAGGAACGAGCTTCTTACGTCGTCAATGGTGAAAGATGGTGTGGAGAAACTGATGGGATCTGGAGAAGTGGATGAGATAAGGAAGAAGGCAAGAGAGTTGGGTGCTGCCGTAAGAGGATCTATGGTGGAAGGTGGAGATTATCGCGTGGATTTGTCTTCTTTTATTGCTCACATCACCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010073 GO:0010075 GO:0010083 GO:0010154 GO:0010380 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034645 GO:0034754 GO:0035251 GO:0035252 GO:0036211 GO:0040008 GO:0042285 GO:0042445 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0045926 GO:0046483 GO:0046527 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048439 GO:0048507 GO:0048509 GO:0048519 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050403 GO:0050404 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051193 GO:0051239 GO:0061458 GO:0065007 GO:0065008 GO:0070085 GO:0071704 GO:0090056 GO:0090567 GO:0090698 GO:0099402 GO:1901135 GO:1901137 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1905613 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00908 ko01110 map00908 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

402

Amino Acids

45.18

Weight (kDa)

6.47

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	12 - 249	1.3e-80	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24360
malus_domestica	MD08G1134000.v1.1 MD14G1076500.v1.1
prunus_persica	Prupe.7G055200_v2.0.a1
pyrus_communis	pycom12g06690 pycom14g06460
rosa_chinensis	RchiOBHm_Chr3g0483281 RchiOBHm_Chr3g0483301
rosa_laevigata	RLG00000023292 RLG00000023293
rosa_multiflora	Rmu_co8444503.1_g000001 Rmu_co8466309.1_g000001 Rmu_sc0003500.1_g000041 Rmu_sc0007550.1_g000013 Rmu_sc0007550.1_g000014 Rmu_sc0013906.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398430 Rroxscaffold_6G00398490 Rroxscaffold_6G00398500
rosa_rugosa	Rorug03G0205100.1
rosa_samantha	Rh3AG253600 Rh3AG253700 Rh3BG290700 Rh3CG287500 Rh3CG287600 Rh3DG283300 Rh3DG283400
rosa_wichuraiana	Rw3G022930 Rw3G022940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1010
AatII	GACGTC	1 cut(s)	204
AccII	CGCG	2 cut(s)	113, 1170
AciI	CCGC	5 cut(s)	100, 111, 328, 342, 471
AclWI	GGATC	4 cut(s)	195, 208, 1090, 1150
AcsI	RAATTY	1 cut(s)	601
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	3 cut(s)	116, 635, 756
AfiI	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	3 cut(s)	311, 601, 742
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	3 cut(s)	85, 892, 1036
AluI	AGCT	3 cut(s)	85, 892, 1036
Alw21I	GWGCWC	1 cut(s)	993
Alw26I	GTCTC	2 cut(s)	472, 1007
AlwI	GGATC	4 cut(s)	195, 208, 1090, 1150
AoxI	GGCC	2 cut(s)	70, 734
ApeKI	GCWGC	1 cut(s)	1130
ApoI	RAATTY	1 cut(s)	601
AspS9I	GGNCC	2 cut(s)	169, 734
AsuC2I	CCSGG	1 cut(s)	643
AsuHPI	GGTGA	6 cut(s)	689, 719, 847, 991, 1066, 1192
AvaII	GGWCC	1 cut(s)	169
BbsI	GAAGAC	2 cut(s)	475, 1173
Bbv12I	GWGCWC	1 cut(s)	993
BbvI	GCAGC	1 cut(s)	1117
BccI	CCATC	5 cut(s)	330, 407, 776, 1055, 1072
BceAI	ACGGC	4 cut(s)	196, 457, 464, 1118
BciT130I	CCWGG	1 cut(s)	567
BciVI	GTATCC	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	472, 1007
BfaI	CTAG	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	525
BisI	GCNGC	2 cut(s)	342, 1131
BlsI	GCNGC	2 cut(s)	343, 1132
Bme1390I	CCNGG	2 cut(s)	567, 643
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	169, 734
BmiI	GGNNCC	2 cut(s)	54, 142
BmrFI	CCNGG	2 cut(s)	567, 643
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	1 cut(s)	934
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	2 cut(s)	475, 1173
BpmI	CTGGAG	2 cut(s)	593, 1107
BpuMI	CCSGG	1 cut(s)	643
BsaAI	YACGTR	1 cut(s)	844
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	1007
BsaJI	CCNNGG	4 cut(s)	165, 178, 565, 962
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	746
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	4 cut(s)	165, 178, 565, 962
BseGI	GGATG	7 cut(s)	120, 234, 387, 414, 515, 949, 1102
BseLI	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	1117
BseYI	CCCAGC	1 cut(s)	183
Bsh1236I	CGCG	2 cut(s)	113, 1170
BshFI	GGCC	2 cut(s)	72, 736
BsiHKAI	GWGCWC	1 cut(s)	993
BsiSI	CCGG	3 cut(s)	62, 642, 758
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	4 cut(s)	68, 184, 372, 571
BsmAI	GTCTC	2 cut(s)	472, 1007
BsmFI	GGGAC	1 cut(s)	868
BsnI	GGCC	2 cut(s)	72, 736
Bso31I	GGTCTC	1 cut(s)	1007
Bsp1286I	GDGCHC	1 cut(s)	993
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
BspACI	CCGC	5 cut(s)	100, 111, 328, 342, 471
BspANI	GGCC	2 cut(s)	72, 736
BspCNI	CTCAG	1 cut(s)	209
BspFNI	CGCG	2 cut(s)	113, 1170
BspLI	GGNNCC	2 cut(s)	54, 142
BspPI	GGATC	4 cut(s)	195, 208, 1090, 1150
BspTNI	GGTCTC	1 cut(s)	1007
BsrFI	RCCGGY	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	4 cut(s)	165, 178, 565, 962
BssMI	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	4 cut(s)	158, 466, 618, 631
BstACI	GRCGYC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	633
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	4 cut(s)	661, 795, 799, 894
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	7 cut(s)	120, 234, 387, 414, 515, 949, 1102
BstFNI	CGCG	2 cut(s)	113, 1170
BstKTI	GATC	6 cut(s)	190, 216, 840, 885, 1085, 1145
BstMAI	GTCTC	2 cut(s)	472, 1007
BstMBI	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	565, 641
BstUI	CGCG	2 cut(s)	113, 1170
BstV1I	GCAGC	1 cut(s)	1117
BstV2I	GAAGAC	2 cut(s)	475, 1173
BstX2I	RGATCY	2 cut(s)	1082, 1142
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	1082, 1142
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	72, 736
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	7 cut(s)	120, 234, 387, 414, 515, 949, 1102
BtsIMutI	CAGTG	2 cut(s)	462, 636
Cac8I	GCNNGC	4 cut(s)	661, 795, 799, 894
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	169, 734
Csp6I	GTAC	3 cut(s)	115, 634, 755
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	4 cut(s)	49, 224, 403, 868
CviQI	GTAC	3 cut(s)	115, 634, 755
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	6 cut(s)	189, 215, 839, 884, 1084, 1144
DpnII	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
EciI	GGCGGA	2 cut(s)	317, 460
Eco130I	CCWWGG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	1007
Eco47I	GGWCC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	52, 227, 406, 871
FaiI	YATR	8 cut(s)	50, 225, 404, 621, 671, 869, 1010, 1148
FalI	AAGNNNNNCTT	2 cut(s)	781, 813
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	4 cut(s)	48, 223, 402, 867
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	342, 1131
FokI	GGATG	7 cut(s)	107, 221, 374, 401, 522, 956, 1109
Fsp4HI	GCNGC	2 cut(s)	342, 1131
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	2 cut(s)	342, 1131
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	2 cut(s)	593, 1107
HaeIII	GGCC	2 cut(s)	72, 736
HapII	CCGG	3 cut(s)	62, 642, 758
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	52, 227, 406, 871
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	4 cut(s)	174, 395, 446, 537
HpaII	CCGG	3 cut(s)	62, 642, 758
HphI	GGTGA	6 cut(s)	689, 719, 847, 991, 1066, 1192
Hpy166II	GTNNAC	5 cut(s)	130, 178, 439, 515, 634
Hpy188I	TCNGA	3 cut(s)	140, 173, 199
Hpy188III	TCNNGA	4 cut(s)	541, 572, 598, 1086
Hpy8I	GTNNAC	5 cut(s)	130, 178, 439, 515, 634
Hpy99I	CGWCG	2 cut(s)	593, 1048
HpyCH4III	ACNGT	4 cut(s)	158, 466, 618, 631
HpyCH4IV	ACGT	4 cut(s)	201, 843, 863, 1043
HpyCH4V	TGCA	2 cut(s)	272, 867
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	4 cut(s)	201, 843, 863, 1043
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	52, 227, 406, 871
Kzo9I	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
LmnI	GCTCC	1 cut(s)	889
Lsp1109I	GCAGC	1 cut(s)	1117
LweI	GCATC	1 cut(s)	934
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	4 cut(s)	201, 843, 863, 1043
MaeIII	GTNAC	2 cut(s)	610, 979
MalI	GATC	6 cut(s)	189, 215, 839, 884, 1084, 1144
MboI	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
MboII	GAAGA	3 cut(s)	475, 1120, 1173
MflI	RGATCY	2 cut(s)	1082, 1142
MhlI	GDGCHC	1 cut(s)	993
MluCI	AATT	2 cut(s)	504, 601
MlyI	GAGTC	4 cut(s)	183, 389, 455, 546
MmeI	TCCRAC	3 cut(s)	33, 118, 885
MslI	CAYNNNNRTG	2 cut(s)	222, 932
MspI	CCGG	3 cut(s)	62, 642, 758
MspR9I	CCNGG	2 cut(s)	567, 643
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	2 cut(s)	113, 1170
NciI	CCSGG	1 cut(s)	643
NdeII	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
NlaIII	CATG	4 cut(s)	52, 227, 406, 871
NlaIV	GGNNCC	2 cut(s)	54, 142
NmuCI	GTSAC	1 cut(s)	979
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PfoI	TCCNGGA	1 cut(s)	641
PkrI	GCNGC	2 cut(s)	343, 1132
PleI	GAGTC	4 cut(s)	182, 389, 454, 545
PpsI	GAGTC	4 cut(s)	182, 389, 454, 545
Ppu21I	YACGTR	1 cut(s)	844
PsiI	TTATAA	1 cut(s)	1010
Psp6I	CCWGG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	54, 142
PspPI	GGNCC	2 cut(s)	169, 734
PsuI	RGATCY	2 cut(s)	1082, 1142
RsaI	GTAC	3 cut(s)	116, 635, 756
RsaNI	GTAC	3 cut(s)	115, 634, 755
RseI	CAYNNNNRTG	2 cut(s)	222, 932
SatI	GCNGC	2 cut(s)	342, 1131
Sau3AI	GATC	6 cut(s)	187, 213, 837, 882, 1082, 1142
Sau96I	GGNCC	2 cut(s)	169, 734
SchI	GAGTC	4 cut(s)	183, 389, 455, 546
ScrFI	CCNGG	2 cut(s)	567, 643
SduI	GDGCHC	1 cut(s)	993
SfaNI	GCATC	1 cut(s)	934
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	2 cut(s)	222, 932
Sse9I	AATT	2 cut(s)	504, 601
SsiI	CCGC	5 cut(s)	100, 111, 328, 342, 471
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	565, 641
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	158, 466, 618, 631
TaiI	ACGT	4 cut(s)	204, 846, 866, 1046
TaqI	TCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	504, 601
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	1 cut(s)	344
TscAI	CASTG	2 cut(s)	469, 636
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	1 cut(s)	1130
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	4 cut(s)	48, 220, 636, 916
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	469, 636
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XspI	CTAG	1 cut(s)	359
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.