FvH4_6g25000

RNA polymerase II transcription factor B subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
18928382 .. 18934594
6213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25000.t1

Sequence Viewer

Length: 1227 bp
ATGTCGTCGATGGCGGGGCAAGTGATTAAGCGTGCCAAATACAAGACTTACATGAGTTCCATCAAAGACCCAGGAACTCCTGGTCTTCTAACCATGATGAAGCATAGCTTTGTGTTCAGGCCTAGTGATCCCACCTCTCCCGCAAACCTTGATGTCCCCTTCCAACTACTTAAAGGTCAGAAGAACACTAAAGACGGATCAAATAAACCACCTTGGCTTAACATCACCAATACTAAGGATGAGAATTACATTCTTGAGTTTGAGACTTATCCTGATCTTCATGCTTGCCGACAAATTATCGCCAATGCCCTAGAGGCTGCAAAAGGTTCTTCTGCTACAACAATCTTTTCTGCCTCCTCTTCTGCATATGAACAATTTAGTACAGCAGAGTTAGAGCTCCGAATCAAGCTTATGCAAGAAGATGGCGAACTGCAGAAACTTCACAAGCAGTTTGTGGGCAGCGGCGTCTTGACAGAATCTGAGTTCTGGGCAACTAGGAAGAGGTTGCTTGATGGAGATAGCCGTAAGAAGTCAAAACAACGGGTTGGTTTTAAAAGTTCAATGATACTGGACATCAAACCTGTGACTGATGGTCGGATGAACAAGGTTACATTCAATTTGACTGATGAGATTAAATATCAGATATTCGCCCTGAAACCAGCTGTGCACCAGGCATTTATTAATCTCGTTCCCAGTAAGATGACAGAGAAAGACTTCTGGAACAAATATTTCCGAGCTGAATACCTCCACAGTACAAAAAATGTTGTAGCAGCTGCTGCAGAAGCTGCTGAGGATGAGGAACTGGCCATTTTTTTAAAGGAAGATGAAATATTGGCAAAGGAAACTCGACAGAAGATTCAGCAGGTTGATCCAATTTTGGATATGGAAGCTGATCAAGGGGATGACTATACACATATTCCAGATCATGGGATATTTCGTGATGGCAACAAGGACATAACTGAACAACAGAATGAGCAATACAGTAGGAGTCTATCACAAGACCTCAATAGACAAGGCACTGTTGTTCTTCAAGGAAGAAATCTAGATGTGGACCCAGAAGATCCAAGAAGTATAGCGGTGGTACTTATGCGGTCAAGACAGGATCCTAGTGACAGTGCTGTACATGAGAGACTTGATAGGATTACCTGGATGACTGAGATAGATGATCTTCAAGAATCTCATGATCATCCGGTTGCTCCTTTATATATCAAGGATCCTCGAGACTAA

Protein Analysis

409

Amino Acids

46.4

Weight (kDa)

5.59

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 202 - 253 1e-12 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 853
AccB7I CCANNNNNTGG 1 cut(s) 926
AciI CCGC 5 cut(s) 14, 141, 462, 1076, 1090
AclWI GGATC 8 cut(s) 122, 205, 863, 1055, 1097, 1110, 1208, 1221
AcoI YGGCCR 1 cut(s) 804
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 4 cut(s) 382, 754, 1083, 1122
AfiI CCNNNNNNNGG 1 cut(s) 926
AgsI TTSAA 4 cut(s) 561, 616, 1031, 1172
AhdI GACNNNNNGTC 1 cut(s) 591
AjnI CCWGG 4 cut(s) 70, 79, 669, 1145
AluBI AGCT 8 cut(s) 108, 397, 409, 662, 737, 773, 785, 890
AluI AGCT 8 cut(s) 108, 397, 409, 662, 737, 773, 785, 890
Alw21I GWGCWC 2 cut(s) 399, 669
Alw26I GTCTC 3 cut(s) 257, 1123, 1215
Alw44I GTGCAC 1 cut(s) 665
AlwI GGATC 8 cut(s) 122, 205, 863, 1055, 1097, 1110, 1208, 1221
AlwNI CAGNNNCTG 3 cut(s) 479, 776, 785
Ama87I CYCGRG 1 cut(s) 1218
AoxI GGCC 2 cut(s) 119, 804
ApaLI GTGCAC 1 cut(s) 665
ApeKI GCWGC 6 cut(s) 317, 459, 770, 773, 776, 785
AseI ATTAAT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 713
AspS9I GGNCC 1 cut(s) 1051
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 1218
AvaII GGWCC 1 cut(s) 1051
BaeGI GKGCMC 1 cut(s) 669
BalI TGGCCA 1 cut(s) 806
BamHI GGATCC 2 cut(s) 1102, 1213
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 399, 669
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 6 cut(s) 304, 471, 760, 763, 772, 782
BccI CCATC 6 cut(s) 4, 68, 416, 506, 584, 935
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 4 cut(s) 72, 81, 671, 1147
BclI TGATCA 2 cut(s) 892, 1183
BcoDI GTCTC 3 cut(s) 257, 1123, 1215
BfaI CTAG 5 cut(s) 123, 311, 495, 1043, 1107
BfmI CTRYAG 2 cut(s) 431, 777
BfuAI ACCTGC 1 cut(s) 853
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 7 cut(s) 318, 460, 463, 771, 774, 777, 786
BlsI GCNGC 7 cut(s) 319, 461, 464, 772, 775, 778, 787
Bme1390I CCNGG 4 cut(s) 72, 81, 671, 1147
Bme18I GGWCC 1 cut(s) 1051
BmeRI GACNNNNNGTC 1 cut(s) 591
BmeT110I CYCGRG 1 cut(s) 1218
BmgT120I GGNCC 1 cut(s) 1051
BmiI GGNNCC 3 cut(s) 1053, 1104, 1215
BmrFI CCNGG 4 cut(s) 72, 81, 671, 1147
BmrI ACTGGG 1 cut(s) 687
BmuI ACTGGG 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 70, 212
BsaWI WCCGGW 1 cut(s) 1189
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse1I ACTGG 3 cut(s) 573, 693, 807
BseBI CCWGG 4 cut(s) 72, 81, 671, 1147
BseDI CCNNGG 2 cut(s) 70, 212
BseGI GGATG 6 cut(s) 244, 603, 799, 907, 1155, 1186
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMII CTCAG 3 cut(s) 471, 780, 1146
BseNI ACTGG 3 cut(s) 573, 693, 807
BseRI GAGGAG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 6 cut(s) 304, 471, 760, 763, 772, 782
BshFI GGCC 2 cut(s) 121, 806
BsiHKAI GWGCWC 2 cut(s) 399, 669
BsiHKCI CYCGRG 1 cut(s) 1218
BsiSI CCGG 1 cut(s) 1190
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 3 cut(s) 257, 1123, 1215
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 121, 806
BsoBI CYCGRG 1 cut(s) 1218
Bsp1286I GDGCHC 2 cut(s) 399, 669
Bsp1407I TGTACA 1 cut(s) 1120
BspACI CCGC 5 cut(s) 14, 141, 462, 1076, 1090
BspANI GGCC 2 cut(s) 121, 806
BspCNI CTCAG 3 cut(s) 472, 781, 1147
BspHI TCATGA 1 cut(s) 1180
BspLI GGNNCC 3 cut(s) 1053, 1104, 1215
BspMAI CTGCAG 2 cut(s) 435, 781
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 8 cut(s) 122, 205, 863, 1055, 1097, 1110, 1208, 1221
BsrGI TGTACA 1 cut(s) 1120
BsrI ACTGG 3 cut(s) 573, 693, 807
BssECI CCNNGG 2 cut(s) 70, 212
BssNI GRCGYC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 4 cut(s) 72, 81, 671, 1147
Bst4CI ACNGT 4 cut(s) 752, 983, 1021, 1115
Bst6I CTCTTC 2 cut(s) 364, 494
BstACI GRCGYC 1 cut(s) 465
BstAPI GCANNNNNTGC 2 cut(s) 776, 785
BstAUI TGTACA 1 cut(s) 1120
BstC8I GCNNGC 2 cut(s) 33, 286
BstDEI CTNAG 4 cut(s) 234, 480, 789, 1155
BstF5I GGATG 6 cut(s) 244, 603, 799, 907, 1155, 1186
BstMAI GTCTC 3 cut(s) 257, 1123, 1215
BstMWI GCNNNNNNNGC 4 cut(s) 314, 776, 782, 785
BstNI CCWGG 4 cut(s) 72, 81, 671, 1147
BstSCI CCNGG 4 cut(s) 70, 79, 669, 1145
BstSFI CTRYAG 2 cut(s) 431, 777
BstSLI GKGCMC 1 cut(s) 669
BstV1I GCAGC 6 cut(s) 304, 471, 760, 763, 772, 782
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 3 cut(s) 1060, 1102, 1213
BstYI RGATCY 3 cut(s) 1060, 1102, 1213
BsuRI GGCC 2 cut(s) 121, 806
BtsCI GGATG 6 cut(s) 244, 603, 799, 907, 1155, 1186
BtsIMutI CAGTG 2 cut(s) 1017, 1120
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 2 cut(s) 33, 286
CaiI CAGNNNCTG 3 cut(s) 479, 776, 785
CciI TCATGA 1 cut(s) 1180
Cfr13I GGNCC 1 cut(s) 1051
CseI GACGC 1 cut(s) 454
Csp6I GTAC 4 cut(s) 381, 753, 1082, 1121
CviAII CATG 6 cut(s) 52, 94, 281, 926, 1124, 1181
CviQI GTAC 4 cut(s) 381, 753, 1082, 1121
DdeI CTNAG 4 cut(s) 234, 480, 789, 1155
DraI TTTAAA 2 cut(s) 553, 816
DriI GACNNNNNGTC 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 2 cut(s) 364, 494
Eam1105I GACNNNNNGTC 1 cut(s) 591
EarI CTCTTC 2 cut(s) 364, 494
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 1051
Eco53kI GAGCTC 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 1218
EcoICRI GAGCTC 1 cut(s) 397
EcoRII CCWGG 4 cut(s) 70, 79, 669, 1145
EcoT14I CCWWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 6 cut(s) 55, 97, 284, 929, 1127, 1184
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 140
FatI CATG 6 cut(s) 51, 93, 280, 925, 1123, 1180
FauI CCCGC 2 cut(s) 7, 148
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 2 cut(s) 892, 1183
Fnu4HI GCNGC 7 cut(s) 318, 460, 463, 771, 774, 777, 786
FokI GGATG 6 cut(s) 251, 610, 806, 914, 1162, 1173
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 7 cut(s) 318, 460, 463, 771, 774, 777, 786
FspBI CTAG 5 cut(s) 123, 311, 495, 1043, 1107
GluI GCNGC 7 cut(s) 318, 460, 463, 771, 774, 777, 786
HaeIII GGCC 2 cut(s) 121, 806
HapII CCGG 1 cut(s) 1190
HgaI GACGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 6 cut(s) 55, 97, 284, 929, 1127, 1184
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 5 cut(s) 402, 476, 856, 988, 1175
HpaII CCGG 1 cut(s) 1190
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 2 cut(s) 667, 1051
Hpy188I TCNGA 6 cut(s) 180, 401, 481, 597, 642, 734
Hpy8I GTNNAC 2 cut(s) 667, 1051
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 4 cut(s) 752, 983, 1021, 1115
HpyCH4V TGCA 6 cut(s) 320, 365, 415, 433, 667, 779
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 776, 782, 785
HpyF3I CTNAG 4 cut(s) 234, 480, 789, 1155
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 6 cut(s) 55, 97, 284, 929, 1127, 1184
Ksp22I TGATCA 2 cut(s) 892, 1183
LmnI GCTCC 2 cut(s) 402, 1201
Lsp1109I GCAGC 6 cut(s) 304, 471, 760, 763, 772, 782
MaeI CTAG 5 cut(s) 123, 311, 495, 1043, 1107
MaeIII GTNAC 3 cut(s) 583, 607, 1109
MflI RGATCY 3 cut(s) 1060, 1102, 1213
MhlI GDGCHC 2 cut(s) 399, 669
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 5 cut(s) 244, 294, 374, 616, 873
MluNI TGGCCA 1 cut(s) 806
MlyI GAGTC 1 cut(s) 997
MmeI TCCRAC 2 cut(s) 187, 575
Mox20I TGGCCA 1 cut(s) 806
MroXI GAANNNNTTC 1 cut(s) 713
MscI TGGCCA 1 cut(s) 806
MseI TTAA 7 cut(s) 27, 171, 219, 552, 633, 681, 815
Msp20I TGGCCA 1 cut(s) 806
MspA1I CMGCKG 3 cut(s) 462, 662, 773
MspI CCGG 1 cut(s) 1190
MspR9I CCNGG 4 cut(s) 72, 81, 671, 1147
MvaI CCWGG 4 cut(s) 72, 81, 671, 1147
MwoI GCNNNNNNNGC 4 cut(s) 314, 776, 782, 785
NdeI CATATG 1 cut(s) 367
NlaIII CATG 6 cut(s) 55, 97, 284, 929, 1127, 1184
NlaIV GGNNCC 3 cut(s) 1053, 1104, 1215
NmuCI GTSAC 2 cut(s) 583, 1109
PaeR7I CTCGAG 1 cut(s) 1218
PagI TCATGA 1 cut(s) 1180
PceI AGGCCT 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 713
PfeI GAWTC 4 cut(s) 402, 476, 856, 1175
PflMI CCANNNNNTGG 1 cut(s) 926
PkrI GCNGC 7 cut(s) 319, 461, 464, 772, 775, 778, 787
PleI GAGTC 1 cut(s) 996
PpsI GAGTC 1 cut(s) 996
PshBI ATTAAT 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 4 cut(s) 70, 79, 669, 1145
PspGI CCWGG 4 cut(s) 70, 79, 669, 1145
PspN4I GGNNCC 3 cut(s) 1053, 1104, 1215
PspPI GGNCC 1 cut(s) 1051
PstI CTGCAG 2 cut(s) 435, 781
PstNI CAGNNNCTG 3 cut(s) 479, 776, 785
PsuI RGATCY 3 cut(s) 1060, 1102, 1213
PvuII CAGCTG 2 cut(s) 662, 773
RsaI GTAC 4 cut(s) 382, 754, 1083, 1122
RsaNI GTAC 4 cut(s) 381, 753, 1082, 1121
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 7 cut(s) 27, 171, 219, 552, 633, 681, 815
SatI GCNGC 7 cut(s) 318, 460, 463, 771, 774, 777, 786
Sau96I GGNCC 1 cut(s) 1051
SchI GAGTC 1 cut(s) 997
ScrFI CCNGG 4 cut(s) 72, 81, 671, 1147
SduI GDGCHC 2 cut(s) 399, 669
SfcI CTRYAG 2 cut(s) 431, 777
Sfr274I CTCGAG 1 cut(s) 1218
SinI GGWCC 1 cut(s) 1051
SlaI CTCGAG 1 cut(s) 1218
SmlI CTYRAG 2 cut(s) 254, 1218
SmoI CTYRAG 2 cut(s) 254, 1218
Sse9I AATT 5 cut(s) 244, 294, 374, 616, 873
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 5 cut(s) 14, 141, 462, 1076, 1090
SspI AATATT 2 cut(s) 728, 831
SspMI CTAG 5 cut(s) 123, 311, 495, 1043, 1107
SstI GAGCTC 1 cut(s) 399
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 4 cut(s) 70, 79, 669, 1145
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 4 cut(s) 752, 983, 1021, 1115
TaqI TCGA 3 cut(s) 8, 847, 1219
TasI AATT 5 cut(s) 244, 294, 374, 616, 873
TatI WGTACW 3 cut(s) 380, 752, 1120
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 4 cut(s) 402, 476, 856, 1175
Tru1I TTAA 7 cut(s) 27, 171, 219, 552, 633, 681, 815
Tru9I TTAA 7 cut(s) 27, 171, 219, 552, 633, 681, 815
TscAI CASTG 2 cut(s) 1024, 1120
TseFI GTSAC 2 cut(s) 583, 1109
TseI GCWGC 6 cut(s) 317, 459, 770, 773, 776, 785
Tsp45I GTSAC 2 cut(s) 583, 1109
TspDTI ATGAA 5 cut(s) 113, 269, 384, 614, 840
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 2 cut(s) 1024, 1120
Van91I CCANNNNNTGG 1 cut(s) 926
VneI GTGCAC 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 1051
VspI ATTAAT 1 cut(s) 681
XbaI TCTAGA 1 cut(s) 1042
XhoI CTCGAG 1 cut(s) 1218
XmnI GAANNNNTTC 1 cut(s) 713
XspI CTAG 5 cut(s) 123, 311, 495, 1043, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.