RNA polymerase II transcription factor B subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT3G61420 AT3G61420 |
| fragaria_vesca | FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_6g25000 |
| malus_domestica | MD08G1246300.v1.1 MD15G1441400.v1.1 |
| prunus_persica | Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 |
| pyrus_communis | pycom08g21370 pycom15g38940 |
| rosa_chinensis | RchiOBHm_Chr7g0221221 |
| rosa_laevigata | RLG00000002169 |
| rosa_multiflora | Rmu_sc0000324.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00238550 |
| rosa_rugosa | Rorug07G0201400 Rorug07G0201500 |
| rosa_samantha | Rh7AG340400 Rh7BG331500 Rh7CG358300 Rh7DG339100 |
| rosa_wichuraiana | Rw7G028970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1176 |
| AarI | CACCTGC | 1 cut(s) | 3022 |
| Acc16I | TGCGCA | 1 cut(s) | 582 |
| Acc36I | ACCTGC | 4 cut(s) | 2186, 2347, 3022, 3415 |
| Acc65I | GGTACC | 3 cut(s) | 954, 1976, 3936 |
| AccB1I | GGYRCC | 4 cut(s) | 356, 954, 1976, 3936 |
| AccB7I | CCANNNNNTGG | 8 cut(s) | 1250, 1267, 1559, 3200, 3814, 3964, 4064, 4157 |
| AccBSI | CCGCTC | 1 cut(s) | 1067 |
| AccII | CGCG | 3 cut(s) | 104, 269, 3597 |
| AccIII | TCCGGA | 1 cut(s) | 881 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AcsI | RAATTY | 2 cut(s) | 2455, 2584 |
| AcuI | CTGAAG | 7 cut(s) | 915, 2091, 2157, 2799, 2874, 3420, 3534 |
| AcyI | GRCGYC | 2 cut(s) | 150, 1579 |
| AdeI | CACNNNGTG | 2 cut(s) | 547, 2092 |
| AflII | CTTAAG | 3 cut(s) | 1931, 3362, 3466 |
| AflIII | ACRYGT | 1 cut(s) | 3832 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1779, 1811, 3024, 3056 |
| Alw21I | GWGCWC | 5 cut(s) | 2059, 2191, 2712, 2851, 4037 |
| Alw26I | GTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| Alw44I | GTGCAC | 2 cut(s) | 2055, 2187 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1697, 2606 |
| Aor13HI | TCCGGA | 1 cut(s) | 881 |
| ApaI | GGGCCC | 2 cut(s) | 3074, 3515 |
| ApaLI | GTGCAC | 2 cut(s) | 2055, 2187 |
| ApeKI | GCWGC | 5 cut(s) | 809, 859, 2552, 2872, 3761 |
| ApoI | RAATTY | 2 cut(s) | 2455, 2584 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2576, 2608 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 139, 1567, 2791, 3184, 3644 |
| Asp718I | GGTACC | 3 cut(s) | 954, 1976, 3936 |
| AspLEI | GCGC | 3 cut(s) | 583, 2218, 4150 |
| AsuC2I | CCSGG | 3 cut(s) | 409, 959, 1576 |
| AsuII | TTCGAA | 1 cut(s) | 8 |
| AsuNHI | GCTAGC | 2 cut(s) | 899, 2660 |
| AvaII | GGWCC | 5 cut(s) | 116, 819, 3495, 3542, 3989 |
| AxyI | CCTNAGG | 2 cut(s) | 1215, 3223 |
| BaeGI | GKGCMC | 4 cut(s) | 2059, 2191, 3074, 3515 |
| BamHI | GGATCC | 3 cut(s) | 462, 476, 1675 |
| BanI | GGYRCC | 4 cut(s) | 356, 954, 1976, 3936 |
| BanII | GRGCYC | 3 cut(s) | 3074, 3515, 4037 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2103, 2135 |
| BbsI | GAAGAC | 1 cut(s) | 3430 |
| Bbv12I | GWGCWC | 5 cut(s) | 2059, 2191, 2712, 2851, 4037 |
| BbvI | GCAGC | 5 cut(s) | 796, 871, 2564, 2884, 3748 |
| BceAI | ACGGC | 3 cut(s) | 70, 1789, 4032 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 791, 825, 992, 1026, 2298, 2332, 2963, 2997 |
| BciVI | GTATCC | 4 cut(s) | 28, 562, 756, 2915 |
| BclI | TGATCA | 3 cut(s) | 306, 982, 1300 |
| BcnI | CCSGG | 3 cut(s) | 409, 959, 1576 |
| BcoDI | GTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| BfmI | CTRYAG | 5 cut(s) | 192, 1221, 1891, 2550, 3432 |
| BfoI | RGCGCY | 1 cut(s) | 2219 |
| BfrI | CTTAAG | 3 cut(s) | 1931, 3362, 3466 |
| BfuAI | ACCTGC | 4 cut(s) | 2186, 2347, 3022, 3415 |
| BfuI | GTATCC | 4 cut(s) | 28, 562, 756, 2915 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 257, 449 |
| BglII | AGATCT | 1 cut(s) | 1565 |
| BlpI | GCTNAGC | 1 cut(s) | 2025 |
| BmcAI | AGTACT | 1 cut(s) | 2810 |
| Bme18I | GGWCC | 5 cut(s) | 116, 819, 3495, 3542, 3989 |
| BmsI | GCATC | 5 cut(s) | 238, 253, 2045, 3159, 3835 |
| BmtI | GCTAGC | 2 cut(s) | 903, 2664 |
| BpiI | GAAGAC | 1 cut(s) | 3430 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2582, 2614 |
| BpmI | CTGGAG | 5 cut(s) | 1701, 3378, 3522, 3774, 4086 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1068 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2025 |
| Bpu14I | TTCGAA | 1 cut(s) | 8 |
| BpuMI | CCSGG | 3 cut(s) | 409, 959, 1576 |
| Bsa29I | ATCGAT | 1 cut(s) | 2973 |
| BsaAI | YACGTR | 1 cut(s) | 3524 |
| BsaHI | GRCGYC | 2 cut(s) | 150, 1579 |
| BsaI | GGTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| BsaWI | WCCGGW | 2 cut(s) | 206, 881 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 836, 866, 1534, 1564, 1806, 1836, 3517, 3547 |
| Bse118I | RCCGGY | 2 cut(s) | 1312, 2212 |
| Bse1I | ACTGG | 8 cut(s) | 913, 2157, 2284, 2502, 2642, 3618, 3724, 4069 |
| Bse21I | CCTNAGG | 2 cut(s) | 1215, 3223 |
| Bse3DI | GCAATG | 7 cut(s) | 349, 785, 1303, 2056, 3111, 3410, 3642 |
| BseAI | TCCGGA | 1 cut(s) | 881 |
| BseCI | ATCGAT | 1 cut(s) | 2973 |
| BseGI | GGATG | 9 cut(s) | 46, 253, 268, 514, 718, 2100, 3020, 3026, 3110 |
| BseMI | GCAATG | 7 cut(s) | 349, 785, 1303, 2056, 3111, 3410, 3642 |
| BseNI | ACTGG | 8 cut(s) | 913, 2157, 2284, 2502, 2642, 3618, 3724, 4069 |
| BseRI | GAGGAG | 6 cut(s) | 6, 239, 2465, 2906, 3408, 3525 |
| BseSI | GKGCMC | 4 cut(s) | 2059, 2191, 3074, 3515 |
| BseX3I | CGGCCG | 1 cut(s) | 99 |
| BseXI | GCAGC | 5 cut(s) | 796, 871, 2564, 2884, 3748 |
| BseYI | CCCAGC | 2 cut(s) | 924, 3572 |
| BsgI | GTGCAG | 5 cut(s) | 231, 627, 2114, 2435, 3000 |
| Bsh1236I | CGCG | 3 cut(s) | 104, 269, 3597 |
| Bsh1285I | CGRYCG | 2 cut(s) | 102, 1065 |
| BshNI | GGYRCC | 4 cut(s) | 356, 954, 1976, 3936 |
| BshVI | ATCGAT | 1 cut(s) | 2973 |
| BsiEI | CGRYCG | 2 cut(s) | 102, 1065 |
| BsiHKAI | GWGCWC | 5 cut(s) | 2059, 2191, 2712, 2851, 4037 |
| BslFI | GGGAC | 9 cut(s) | 129, 749, 958, 1393, 3244, 3481, 3568, 3975, 4087 |
| BsmAI | GTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| BsmFI | GGGAC | 9 cut(s) | 129, 749, 958, 1393, 3244, 3481, 3568, 3975, 4087 |
| BsmI | GAATGC | 2 cut(s) | 1488, 3711 |
| Bso31I | GGTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| Bsp119I | TTCGAA | 1 cut(s) | 8 |
| Bsp120I | GGGCCC | 2 cut(s) | 3070, 3511 |
| Bsp1286I | GDGCHC | 7 cut(s) | 2059, 2191, 2712, 2851, 3074, 3515, 4037 |
| Bsp13I | TCCGGA | 1 cut(s) | 881 |
| Bsp1407I | TGTACA | 1 cut(s) | 3835 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2025 |
| Bsp19I | CCATGG | 2 cut(s) | 466, 3066 |
| BspDI | ATCGAT | 1 cut(s) | 2973 |
| BspEI | TCCGGA | 1 cut(s) | 881 |
| BspFNI | CGCG | 3 cut(s) | 104, 269, 3597 |
| BspHI | TCATGA | 2 cut(s) | 1096, 4186 |
| BspMAI | CTGCAG | 2 cut(s) | 2554, 3436 |
| BspMI | ACCTGC | 4 cut(s) | 2186, 2347, 3022, 3415 |
| BspOI | GCTAGC | 2 cut(s) | 903, 2664 |
| BspT104I | TTCGAA | 1 cut(s) | 8 |
| BspT107I | GGYRCC | 4 cut(s) | 356, 954, 1976, 3936 |
| BspTI | CTTAAG | 3 cut(s) | 1931, 3362, 3466 |
| BspTNI | GGTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| BsrBI | CCGCTC | 1 cut(s) | 1067 |
| BsrDI | GCAATG | 7 cut(s) | 349, 785, 1303, 2056, 3111, 3410, 3642 |
| BsrFI | RCCGGY | 2 cut(s) | 1312, 2212 |
| BsrGI | TGTACA | 1 cut(s) | 3835 |
| BsrI | ACTGG | 8 cut(s) | 913, 2157, 2284, 2502, 2642, 3618, 3724, 4069 |
| BssAI | RCCGGY | 2 cut(s) | 1312, 2212 |
| BssNI | GRCGYC | 2 cut(s) | 150, 1579 |
| BssT1I | CCWWGG | 6 cut(s) | 153, 466, 1144, 1992, 3031, 3066 |
| Bst6I | CTCTTC | 2 cut(s) | 1663, 2782 |
| BstACI | GRCGYC | 2 cut(s) | 150, 1579 |
| BstAFI | CTTAAG | 3 cut(s) | 1931, 3362, 3466 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1043 |
| BstAUI | TGTACA | 1 cut(s) | 3835 |
| BstBAI | YACGTR | 1 cut(s) | 3524 |
| BstBI | TTCGAA | 1 cut(s) | 8 |
| BstDSI | CCRYGG | 4 cut(s) | 102, 267, 466, 3066 |
| BstEII | GGTNACC | 1 cut(s) | 3803 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1683, 2109 |
| BstF5I | GGATG | 9 cut(s) | 46, 253, 268, 514, 718, 2100, 3020, 3026, 3110 |
| BstFNI | CGCG | 3 cut(s) | 104, 269, 3597 |
| BstH2I | RGCGCY | 1 cut(s) | 2219 |
| BstHHI | GCGC | 3 cut(s) | 583, 2218, 4150 |
| BstMAI | GTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| BstMCI | CGRYCG | 2 cut(s) | 102, 1065 |
| BstNSI | RCATGY | 5 cut(s) | 1592, 2773, 3836, 4102, 4148 |
| BstPI | GGTNACC | 1 cut(s) | 3803 |
| BstSFI | CTRYAG | 5 cut(s) | 192, 1221, 1891, 2550, 3432 |
| BstSLI | GKGCMC | 4 cut(s) | 2059, 2191, 3074, 3515 |
| BstSNI | TACGTA | 1 cut(s) | 3524 |
| BstUI | CGCG | 3 cut(s) | 104, 269, 3597 |
| BstV1I | GCAGC | 5 cut(s) | 796, 871, 2564, 2884, 3748 |
| BstV2I | GAAGAC | 1 cut(s) | 3430 |
| BstX2I | RGATCY | 6 cut(s) | 462, 476, 1565, 1675, 3614, 3865 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 473, 1679, 3701 |
| BstYI | RGATCY | 6 cut(s) | 462, 476, 1565, 1675, 3614, 3865 |
| BstZI | CGGCCG | 1 cut(s) | 99 |
| Bsu15I | ATCGAT | 1 cut(s) | 2973 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1215, 3223 |
| BsuI | GTATCC | 4 cut(s) | 28, 562, 756, 2915 |
| BsuTUI | ATCGAT | 1 cut(s) | 2973 |
| BtgI | CCRYGG | 4 cut(s) | 102, 267, 466, 3066 |
| BtsCI | GGATG | 9 cut(s) | 46, 253, 268, 514, 718, 2100, 3020, 3026, 3110 |
| BtsI | GCAGTG | 1 cut(s) | 565 |
| BtsIMutI | CAGTG | 4 cut(s) | 565, 2086, 2383, 2635 |
| BveI | ACCTGC | 4 cut(s) | 2186, 2347, 3022, 3415 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1697, 2606 |
| CciI | TCATGA | 2 cut(s) | 1096, 4186 |
| CciNI | GCGGCCGC | 1 cut(s) | 99 |
| CfoI | GCGC | 3 cut(s) | 583, 2218, 4150 |
| Cfr10I | RCCGGY | 2 cut(s) | 1312, 2212 |
| Cfr42I | CCGCGG | 2 cut(s) | 105, 270 |
| ClaI | ATCGAT | 1 cut(s) | 2973 |
| CseI | GACGC | 2 cut(s) | 158, 1568 |
| DraI | TTTAAA | 1 cut(s) | 3480 |
| DraIII | CACNNNGTG | 2 cut(s) | 547, 2092 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| EagI | CGGCCG | 1 cut(s) | 99 |
| Eam1104I | CTCTTC | 2 cut(s) | 1663, 2782 |
| EarI | CTCTTC | 2 cut(s) | 1663, 2782 |
| EciI | GGCGGA | 3 cut(s) | 215, 275, 335 |
| Ecl136II | GAGCTC | 1 cut(s) | 4035 |
| EclXI | CGGCCG | 1 cut(s) | 99 |
| Eco105I | TACGTA | 1 cut(s) | 3524 |
| Eco130I | CCWWGG | 6 cut(s) | 153, 466, 1144, 1992, 3031, 3066 |
| Eco147I | AGGCCT | 1 cut(s) | 4120 |
| Eco24I | GRGCYC | 3 cut(s) | 3074, 3515, 4037 |
| Eco31I | GGTCTC | 4 cut(s) | 940, 1170, 3267, 3292 |
| Eco32I | GATATC | 1 cut(s) | 597 |
| Eco47I | GGWCC | 5 cut(s) | 116, 819, 3495, 3542, 3989 |
| Eco52I | CGGCCG | 1 cut(s) | 99 |
| Eco53kI | GAGCTC | 1 cut(s) | 4035 |
| Eco57I | CTGAAG | 7 cut(s) | 915, 2091, 2157, 2799, 2874, 3420, 3534 |
| Eco81I | CCTNAGG | 2 cut(s) | 1215, 3223 |
| Eco91I | GGTNACC | 1 cut(s) | 3803 |
| EcoICRI | GAGCTC | 1 cut(s) | 4035 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1683, 2109 |
| EcoO109I | RGGNCCY | 4 cut(s) | 116, 3071, 3495, 3511 |
| EcoO65I | GGTNACC | 1 cut(s) | 3803 |
| EcoRV | GATATC | 1 cut(s) | 597 |
| EcoT14I | CCWWGG | 6 cut(s) | 153, 466, 1144, 1992, 3031, 3066 |
| EcoT22I | ATGCAT | 2 cut(s) | 3174, 4146 |
| EcoT38I | GRGCYC | 3 cut(s) | 3074, 3515, 4037 |
| ErhI | CCWWGG | 6 cut(s) | 153, 466, 1144, 1992, 3031, 3066 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 1849, 1881, 3460, 3492, 4003, 4035, 4182 |
| FaqI | GGGAC | 9 cut(s) | 129, 749, 958, 1393, 3244, 3481, 3568, 3975, 4087 |
| FauI | CCCGC | 4 cut(s) | 106, 346, 535, 3245 |
| FauNDI | CATATG | 2 cut(s) | 966, 1546 |
| FbaI | TGATCA | 3 cut(s) | 306, 982, 1300 |
| FokI | GGATG | 9 cut(s) | 53, 260, 275, 521, 725, 2087, 3007, 3013, 3097 |
| FriOI | GRGCYC | 3 cut(s) | 3074, 3515, 4037 |
| FspI | TGCGCA | 1 cut(s) | 582 |
| GlaI | GCGC | 3 cut(s) | 582, 2217, 4149 |
| GsaI | CCCAGC | 2 cut(s) | 928, 3576 |
| GsuI | CTGGAG | 5 cut(s) | 1701, 3378, 3522, 3774, 4086 |
| HaeII | RGCGCY | 1 cut(s) | 2219 |
| HgaI | GACGC | 2 cut(s) | 158, 1568 |
| HhaI | GCGC | 3 cut(s) | 583, 2218, 4150 |
| Hin1I | GRCGYC | 2 cut(s) | 150, 1579 |
| Hin6I | GCGC | 3 cut(s) | 581, 2216, 4148 |
| HinP1I | GCGC | 3 cut(s) | 581, 2216, 4148 |
| HincII | GTYRAC | 2 cut(s) | 1946, 3682 |
| HindII | GTYRAC | 2 cut(s) | 1946, 3682 |
| HindIII | AAGCTT | 2 cut(s) | 672, 2027 |
| Hpy166II | GTNNAC | 8 cut(s) | 718, 793, 1542, 1946, 2057, 2189, 3043, 3682 |
| Hpy8I | GTNNAC | 8 cut(s) | 718, 793, 1542, 1946, 2057, 2189, 3043, 3682 |
| Hpy99I | CGWCG | 5 cut(s) | 91, 94, 97, 149, 152 |
| HpyCH4IV | ACGT | 3 cut(s) | 2654, 2864, 3523 |
| HpySE526I | ACGT | 3 cut(s) | 2654, 2864, 3523 |
| Hsp92I | GRCGYC | 2 cut(s) | 150, 1579 |
| HspAI | GCGC | 3 cut(s) | 581, 2216, 4148 |
| KflI | GGGWCCC | 2 cut(s) | 116, 3495 |
| Kpn2I | TCCGGA | 1 cut(s) | 881 |
| KpnI | GGTACC | 3 cut(s) | 958, 1980, 3940 |
| KroI | GCCGGC | 1 cut(s) | 2212 |
| KroNI | GCCGGC | 1 cut(s) | 2214 |
| Ksp22I | TGATCA | 3 cut(s) | 306, 982, 1300 |
| KspI | CCGCGG | 2 cut(s) | 105, 270 |
| Lsp1109I | GCAGC | 5 cut(s) | 796, 871, 2564, 2884, 3748 |
| LweI | GCATC | 5 cut(s) | 238, 253, 2045, 3159, 3835 |
| MaeII | ACGT | 3 cut(s) | 2654, 2864, 3523 |
| MbiI | CCGCTC | 1 cut(s) | 1067 |
| MfeI | CAATTG | 2 cut(s) | 1008, 2201 |
| MflI | RGATCY | 6 cut(s) | 462, 476, 1565, 1675, 3614, 3865 |
| MhlI | GDGCHC | 7 cut(s) | 2059, 2191, 2712, 2851, 3074, 3515, 4037 |
| MlyI | GAGTC | 5 cut(s) | 302, 344, 1244, 2600, 3884 |
| MmeI | TCCRAC | 6 cut(s) | 168, 1540, 1577, 1792, 1804, 2764 |
| Mph1103I | ATGCAT | 2 cut(s) | 3174, 4146 |
| MroI | TCCGGA | 1 cut(s) | 881 |
| MroNI | GCCGGC | 1 cut(s) | 2212 |
| MroXI | GAANNNNTTC | 5 cut(s) | 139, 1567, 2791, 3184, 3644 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1628 |
| MspA1I | CMGCKG | 4 cut(s) | 104, 269, 3268, 3398 |
| MspCI | CTTAAG | 3 cut(s) | 1931, 3362, 3466 |
| MunI | CAATTG | 2 cut(s) | 1008, 2201 |
| Mva1269I | GAATGC | 2 cut(s) | 1488, 3711 |
| MvnI | CGCG | 3 cut(s) | 104, 269, 3597 |
| NaeI | GCCGGC | 1 cut(s) | 2214 |
| NciI | CCSGG | 3 cut(s) | 409, 959, 1576 |
| NcoI | CCATGG | 2 cut(s) | 466, 3066 |
| NdeI | CATATG | 2 cut(s) | 966, 1546 |
| NgoMIV | GCCGGC | 1 cut(s) | 2212 |
| NheI | GCTAGC | 2 cut(s) | 899, 2660 |
| NmuCI | GTSAC | 5 cut(s) | 889, 1125, 3726, 3803, 4175 |
| NotI | GCGGCCGC | 1 cut(s) | 99 |
| NsbI | TGCGCA | 1 cut(s) | 582 |
| NsiI | ATGCAT | 2 cut(s) | 3174, 4146 |
| NspI | RCATGY | 5 cut(s) | 1592, 2773, 3836, 4102, 4148 |
| NspV | TTCGAA | 1 cut(s) | 8 |
| PaeI | GCATGC | 1 cut(s) | 4148 |
| PagI | TCATGA | 2 cut(s) | 1096, 4186 |
| PaqCI | CACCTGC | 1 cut(s) | 3022 |
| PasI | CCCWGGG | 1 cut(s) | 515 |
| PceI | AGGCCT | 1 cut(s) | 4120 |
| PciI | ACATGT | 1 cut(s) | 3832 |
| PctI | GAATGC | 2 cut(s) | 1488, 3711 |
| PdiI | GCCGGC | 1 cut(s) | 2214 |
| PdmI | GAANNNNTTC | 5 cut(s) | 139, 1567, 2791, 3184, 3644 |
| PflFI | GACNNNGTC | 1 cut(s) | 2616 |
| PflMI | CCANNNNNTGG | 8 cut(s) | 1250, 1267, 1559, 3200, 3814, 3964, 4064, 4157 |
| PfoI | TCCNGGA | 3 cut(s) | 1678, 2293, 3538 |
| PleI | GAGTC | 5 cut(s) | 301, 343, 1243, 2599, 3884 |
| PpsI | GAGTC | 5 cut(s) | 301, 343, 1243, 2599, 3884 |
| Ppu21I | YACGTR | 1 cut(s) | 3524 |
| PpuMI | RGGWCCY | 2 cut(s) | 116, 3495 |
| PscI | ACATGT | 1 cut(s) | 3832 |
| PsiI | TTATAA | 1 cut(s) | 1176 |
| Psp124BI | GAGCTC | 1 cut(s) | 4037 |
| Psp5II | RGGWCCY | 2 cut(s) | 116, 3495 |
| PspEI | GGTNACC | 1 cut(s) | 3803 |
| PspFI | CCCAGC | 2 cut(s) | 924, 3572 |
| PspOMI | GGGCCC | 2 cut(s) | 3070, 3511 |
| PspPPI | RGGWCCY | 2 cut(s) | 116, 3495 |
| PstI | CTGCAG | 2 cut(s) | 2554, 3436 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1697, 2606 |
| PsuI | RGATCY | 6 cut(s) | 462, 476, 1565, 1675, 3614, 3865 |
| PsyI | GACNNNGTC | 1 cut(s) | 2616 |
| PvuII | CAGCTG | 2 cut(s) | 3268, 3398 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1628 |
| SacI | GAGCTC | 1 cut(s) | 4037 |
| SacII | CCGCGG | 2 cut(s) | 105, 270 |
| ScaI | AGTACT | 1 cut(s) | 2810 |
| SchI | GAGTC | 5 cut(s) | 302, 344, 1244, 2600, 3884 |
| SduI | GDGCHC | 7 cut(s) | 2059, 2191, 2712, 2851, 3074, 3515, 4037 |
| SfaNI | GCATC | 5 cut(s) | 238, 253, 2045, 3159, 3835 |
| SfcI | CTRYAG | 5 cut(s) | 192, 1221, 1891, 2550, 3432 |
| Sfr303I | CCGCGG | 2 cut(s) | 105, 270 |
| SfuI | TTCGAA | 1 cut(s) | 8 |
| SgrBI | CCGCGG | 2 cut(s) | 105, 270 |
| SinI | GGWCC | 5 cut(s) | 116, 819, 3495, 3542, 3989 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1628 |
| SmlI | CTYRAG | 3 cut(s) | 1931, 3362, 3466 |
| SmoI | CTYRAG | 3 cut(s) | 1931, 3362, 3466 |
| SnaBI | TACGTA | 1 cut(s) | 3524 |
| SphI | GCATGC | 1 cut(s) | 4148 |
| SseBI | AGGCCT | 1 cut(s) | 4120 |
| SspI | AATATT | 2 cut(s) | 2699, 2823 |
| SstI | GAGCTC | 1 cut(s) | 4037 |
| StuI | AGGCCT | 1 cut(s) | 4120 |
| StyI | CCWWGG | 6 cut(s) | 153, 466, 1144, 1992, 3031, 3066 |
| TaiI | ACGT | 3 cut(s) | 2657, 2867, 3526 |
| TaqI | TCGA | 7 cut(s) | 8, 66, 78, 296, 801, 2650, 2973 |
| TatI | WGTACW | 3 cut(s) | 2140, 2808, 3835 |
| TauI | GCSGC | 9 cut(s) | 101, 104, 107, 191, 200, 269, 4132, 4164, 4167 |
| TscAI | CASTG | 4 cut(s) | 565, 2093, 2383, 2642 |
| TseFI | GTSAC | 5 cut(s) | 889, 1125, 3726, 3803, 4175 |
| TseI | GCWGC | 5 cut(s) | 809, 859, 2552, 2872, 3761 |
| Tsp45I | GTSAC | 5 cut(s) | 889, 1125, 3726, 3803, 4175 |
| TspGWI | ACGGA | 1 cut(s) | 53 |
| TspRI | CASTG | 4 cut(s) | 565, 2093, 2383, 2642 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2616 |
| Van91I | CCANNNNNTGG | 8 cut(s) | 1250, 1267, 1559, 3200, 3814, 3964, 4064, 4157 |
| Vha464I | CTTAAG | 3 cut(s) | 1931, 3362, 3466 |
| VneI | GTGCAC | 2 cut(s) | 2055, 2187 |
| VpaK11BI | GGWCC | 5 cut(s) | 116, 819, 3495, 3542, 3989 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1683, 2109 |
| XapI | RAATTY | 2 cut(s) | 2455, 2584 |
| XbaI | TCTAGA | 1 cut(s) | 2887 |
| XceI | RCATGY | 5 cut(s) | 1592, 2773, 3836, 4102, 4148 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2993 |
| XmnI | GAANNNNTTC | 5 cut(s) | 139, 1567, 2791, 3184, 3644 |
| ZrmI | AGTACT | 1 cut(s) | 2810 |
| Zsp2I | ATGCAT | 2 cut(s) | 3174, 4146 |