pycom08g21370

RNA polymerase II transcription factor B subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
20867334 .. 20874615
7282 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g21370.7

Sequence Viewer

Length: 1803 bp
ATGTCTTCTTCATCGTCCTCGTCGTCGAGGCGAGTGGTGAAGCGTGCACAATACAAGGATGCGGCAAAATTAAAGAACCCTGGCATTCCTGGCGTTTTAACTATGGTTAAGGACAAGTTTGTGTTCAAGCCAAACGATCCCACGTCTACCCAAACCCTTGATGTGGAGTTTAGGCATATTAAAGGTCACAAAAACACCAAGGAGGGATCCAAGCAAGCACCTTTGCTTAATCTCAGCAGCAGTCGTGAGGTTAAAAGTTACATTTTTGAGTTTAAAAGTTTTCCCGATCTTCATGAATGCCGGGATTTTGTAGGCAATGCCCTATCTAAGGCTGCAGAAGCTGCAAAAACTGCTCCTAAGAAAGATGGAGTTACATTGCCTGATGAACAACTCAGTGCAGCAGAAATGGAGCTCCGTATGAAGCTATTGCAAGAAGACAGTGAACTGCAGAACCTTCATATGCAGTTTGTAATCAGTGGTGTTTTGACAGAATCTGAGTTCTGGGCAACTAGGAAGAAGTTGCTTGATGGAGATAGCCGTACAAAGCCAAAACAACGGGTTGGTTTTAAAAATTCAATGATTTTGGACACCAAACCTACAAGTGATGGTCGGATGAACAAGGTTACGTTTAATTTCACTCCAGAGATTAAATATCAGATCTTTGCTCTCAAACCAGCTGTTCACCAGGCATTTCTTGAACTAGTGCCCAGTAAGATGACAGCAAAAGACTTCTGGACAAAATATTTCAGAGCTGAATTCCTTCACAGTACCAAGAATACTGCTGCAATTGCGGCAGAAGCTGCTGAGGATGAGGAACTGGCAATTTTTTTAAAGGAGGATGAAATATTGGCAAGGGAAGCTCGTCAGAAGATTCGACGGGTTGATCCAACTTTGGATATGGAAGCTGACCAAGGGGATGATTATACACATCTTCCTGATCATGGGATCTTTCGTGATGGTGGCAAGGACATCACTGAACTACAGAATGAGCAATACAGGAGGACTTTATCACAAGACCTTAACAGGCAAGGGGCTGTTGTTCTTCAAGGAAGAACTGTTGATGGGGATTTAGAAGATCCAAATAATGTTGCAGAAGCACTTATGCGGTCAAGACAGGAGCCTGATGAGAGTGCTGTGCAGGAGAGACTTGATAGGATTGCTCGGATGAATGAGATAGATGACCTTCGAGAACCTCACGATCATCCTGTTGCTCAATTATGTATTAAGGATCCTCGAGACTACTTTGACACGCAACAAGCTAATGCACTTAAAGCTTTGGATGAATCACGAATAGGAACTGAACAAAAAAAATGCAGCATGACCACTGAGGAAGCATATGGCTCCTTGAAGGAGTCTATATCTAAAATTAAGAGCATTGGATTGAAAAATTCCACAGTTGCACCAGAAATTGCTCTTATGGTTCTTAATGGACTGACTCAGAATATTTCTAGTACCAAGTATCAACTCGGAAAGAATCCTCGGGAGGGTATTCTGGACAGTTTGCCAAACAAAATGAAAGAGGAACTGCTGCATCATTCGATGTCCATTCAAGAATTACTGAGGCATTTTTGGTCTACATATCCAATTACCACAGCTTATCTTTCTACAAAGGTAGGCAAACTGAAGGATGCCATGTCACAAATCTATCGACAGCTAGAGGAGATAAAGGAATCAGACTTCCGGCACCAGGTTTCTCTCCTTGTTCGGCCAATGCATCAGGCACTTGATGCGGCTTTTCAACATTATGAATCGGACTTACAGAAAAGAGCTGCAACTGCAACGATGCCGAATGGAAATGCGTAG

Protein Analysis

601

Amino Acids

67.95

Weight (kDa)

6.63

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1683
AccI GTMKAC 2 cut(s) 146, 1574
AciI CCGC 4 cut(s) 62, 791, 1105, 1730
AclWI GGATC 8 cut(s) 131, 201, 214, 878, 953, 1070, 1223, 1236
AcoI YGGCCR 1 cut(s) 1706
AcsI RAATTY 3 cut(s) 571, 755, 1387
AcuI CTGAAG 1 cut(s) 1643
AfaI GTAC 3 cut(s) 541, 769, 1453
AfiI CCNNNNNNNGG 5 cut(s) 163, 328, 941, 1484, 1687
AgsI TTSAA 8 cut(s) 127, 576, 698, 1046, 1348, 1384, 1550, 1739
AhlI ACTAGT 1 cut(s) 700
AjiI CACGTC 1 cut(s) 144
AjnI CCWGG 4 cut(s) 79, 88, 684, 1686
Alw21I GWGCWC 2 cut(s) 49, 414
Alw26I GTCTC 2 cut(s) 1138, 1230
Alw44I GTGCAC 1 cut(s) 45
AlwI GGATC 8 cut(s) 131, 201, 214, 878, 953, 1070, 1223, 1236
AlwNI CAGNNNCTG 3 cut(s) 341, 494, 800
Ama87I CYCGRG 2 cut(s) 1233, 1479
AoxI GGCC 1 cut(s) 1706
ApaLI GTGCAC 1 cut(s) 45
ApeKI GCWGC 9 cut(s) 237, 332, 341, 398, 782, 800, 1314, 1528, 1769
ApoI RAATTY 3 cut(s) 571, 755, 1387
Asp700I GAANNNNTTC 1 cut(s) 759
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 49, 674
AvaI CYCGRG 2 cut(s) 1233, 1479
BaeGI GKGCMC 2 cut(s) 49, 708
BamHI GGATCC 2 cut(s) 206, 1228
BanI GGYRCC 1 cut(s) 1683
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 2 cut(s) 49, 414
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 9 cut(s) 249, 319, 328, 410, 769, 787, 1326, 1515, 1756
BccI CCATC 5 cut(s) 359, 521, 599, 950, 1055
BceAI ACGGC 1 cut(s) 522
BciT130I CCWGG 4 cut(s) 81, 90, 686, 1688
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 1138, 1230
BcuI ACTAGT 1 cut(s) 700
BfaI CTAG 4 cut(s) 510, 701, 1449, 1655
BfmI CTRYAG 3 cut(s) 333, 446, 980
BglII AGATCT 1 cut(s) 657
Bme1390I CCNGG 5 cut(s) 81, 90, 302, 686, 1688
BmeT110I CYCGRG 2 cut(s) 1233, 1479
BmgBI CACGTC 1 cut(s) 144
BmiI GGNNCC 5 cut(s) 208, 1119, 1230, 1342, 1685
BmrFI CCNGG 5 cut(s) 81, 90, 302, 686, 1688
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 6 cut(s) 49, 1540, 1618, 1717, 1723, 1773
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 302
BsaJI CCNNGG 4 cut(s) 79, 198, 910, 1478
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 328, 941, 1484, 1687
Bse1I ACTGG 2 cut(s) 708, 822
Bse3DI GCAATG 2 cut(s) 322, 374
BseBI CCWGG 4 cut(s) 81, 90, 686, 1688
BseDI CCNNGG 4 cut(s) 79, 198, 910, 1478
BseGI GGATG 9 cut(s) 64, 618, 814, 844, 922, 1170, 1201, 1285, 1633
BseLI CCNNNNNNNGG 5 cut(s) 163, 328, 941, 1484, 1687
BseMI GCAATG 2 cut(s) 322, 374
BseMII CTCAG 7 cut(s) 247, 406, 486, 795, 1317, 1451, 1550
BseNI ACTGG 2 cut(s) 708, 822
BseRI GAGGAG 1 cut(s) 1673
BseSI GKGCMC 2 cut(s) 49, 708
BseXI GCAGC 9 cut(s) 249, 319, 328, 410, 769, 787, 1326, 1515, 1756
BsgI GTGCAG 2 cut(s) 417, 1157
BshFI GGCC 1 cut(s) 1708
BshNI GGYRCC 1 cut(s) 1683
BsiHKAI GWGCWC 2 cut(s) 49, 414
BsiHKCI CYCGRG 2 cut(s) 1233, 1479
BsiSI CCGG 2 cut(s) 301, 1681
BslI CCNNNNNNNGG 5 cut(s) 163, 328, 941, 1484, 1687
BsmAI GTCTC 2 cut(s) 1138, 1230
BsmI GAATGC 2 cut(s) 84, 302
BsnI GGCC 1 cut(s) 1708
BsoBI CYCGRG 2 cut(s) 1233, 1479
Bsp1286I GDGCHC 3 cut(s) 49, 414, 708
BspACI CCGC 4 cut(s) 62, 791, 1105, 1730
BspANI GGCC 1 cut(s) 1708
BspCNI CTCAG 7 cut(s) 246, 405, 487, 796, 1318, 1450, 1551
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 5 cut(s) 208, 1119, 1230, 1342, 1685
BspMAI CTGCAG 2 cut(s) 337, 450
BspPI GGATC 8 cut(s) 131, 201, 214, 878, 953, 1070, 1223, 1236
BspT107I GGYRCC 1 cut(s) 1683
BsrDI GCAATG 2 cut(s) 322, 374
BsrI ACTGG 2 cut(s) 708, 822
BssECI CCNNGG 4 cut(s) 79, 198, 910, 1478
BssT1I CCWWGG 2 cut(s) 198, 910
Bst2UI CCWGG 4 cut(s) 81, 90, 686, 1688
Bst4CI ACNGT 5 cut(s) 440, 767, 1057, 1396, 1499
BstAPI GCANNNNNTGC 4 cut(s) 341, 350, 800, 1727
BstC8I GCNNGC 2 cut(s) 45, 216
BstDEI CTNAG 9 cut(s) 233, 327, 357, 392, 495, 804, 1326, 1437, 1559
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 9 cut(s) 64, 618, 814, 844, 922, 1170, 1201, 1285, 1633
BstMAI GTCTC 2 cut(s) 1138, 1230
BstNI CCWGG 4 cut(s) 81, 90, 686, 1688
BstSCI CCNGG 5 cut(s) 79, 88, 300, 684, 1686
BstSFI CTRYAG 3 cut(s) 333, 446, 980
BstSLI GKGCMC 2 cut(s) 49, 708
BstV1I GCAGC 9 cut(s) 249, 319, 328, 410, 769, 787, 1326, 1515, 1756
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 5 cut(s) 206, 657, 945, 1075, 1228
BstYI RGATCY 5 cut(s) 206, 657, 945, 1075, 1228
BsuRI GGCC 1 cut(s) 1708
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 9 cut(s) 64, 618, 814, 844, 922, 1170, 1201, 1285, 1633
BtsIMutI CAGTG 5 cut(s) 400, 445, 481, 972, 1323
Cac8I GCNNGC 2 cut(s) 45, 216
CaiI CAGNNNCTG 3 cut(s) 341, 494, 800
CciI TCATGA 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 1686
Csp6I GTAC 3 cut(s) 540, 768, 1452
CviAII CATG 4 cut(s) 293, 941, 1318, 1633
CviQI GTAC 3 cut(s) 540, 768, 1452
DdeI CTNAG 9 cut(s) 233, 327, 357, 392, 495, 804, 1326, 1437, 1559
DraI TTTAAA 3 cut(s) 274, 568, 831
EaeI YGGCCR 1 cut(s) 1706
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 198, 910
Eco24I GRGCYC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 1643
Eco88I CYCGRG 2 cut(s) 1233, 1479
EcoICRI GAGCTC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 4 cut(s) 79, 88, 684, 1686
EcoT14I CCWWGG 2 cut(s) 198, 910
EcoT22I ATGCAT 1 cut(s) 1716
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 2 cut(s) 198, 910
FaeI CATG 4 cut(s) 296, 944, 1321, 1636
FatI CATG 4 cut(s) 292, 940, 1317, 1632
FauNDI CATATG 2 cut(s) 459, 1336
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 2 cut(s) 146, 1574
FokI GGATG 9 cut(s) 71, 625, 821, 851, 929, 1177, 1188, 1292, 1640
FriOI GRGCYC 1 cut(s) 414
FspBI CTAG 4 cut(s) 510, 701, 1449, 1655
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 1 cut(s) 1708
HapII CCGG 2 cut(s) 301, 1681
Hin1II CATG 4 cut(s) 296, 944, 1321, 1636
HindIII AAGCTT 1 cut(s) 1272
HinfI GANTC 8 cut(s) 491, 871, 1283, 1352, 1435, 1474, 1670, 1748
HpaII CCGG 2 cut(s) 301, 1681
HphI GGTGA 2 cut(s) 49, 674
Hpy166II GTNNAC 5 cut(s) 47, 147, 443, 682, 1575
Hpy8I GTNNAC 5 cut(s) 47, 147, 443, 682, 1575
Hpy99I CGWCG 3 cut(s) 25, 28, 879
HpyAV CCTTC 5 cut(s) 464, 770, 1193, 1342, 1618
HpyCH4III ACNGT 5 cut(s) 440, 767, 1057, 1396, 1499
HpyCH4IV ACGT 2 cut(s) 143, 626
HpyF3I CTNAG 9 cut(s) 233, 327, 357, 392, 495, 804, 1326, 1437, 1559
HpySE526I ACGT 2 cut(s) 143, 626
Hsp92II CATG 4 cut(s) 296, 944, 1321, 1636
Ksp22I TGATCA 1 cut(s) 937
LmnI GCTCC 5 cut(s) 358, 409, 417, 1117, 1346
Lsp1109I GCAGC 9 cut(s) 249, 319, 328, 410, 769, 787, 1326, 1515, 1756
LweI GCATC 6 cut(s) 49, 1540, 1618, 1717, 1723, 1773
MabI ACCWGGT 1 cut(s) 1686
MaeI CTAG 4 cut(s) 510, 701, 1449, 1655
MaeII ACGT 2 cut(s) 143, 626
MaeIII GTNAC 5 cut(s) 185, 257, 370, 622, 1635
MboII GAAGA 8 cut(s) 281, 446, 526, 880, 923, 1034, 1062, 1085
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 5 cut(s) 206, 657, 945, 1075, 1228
MhlI GDGCHC 3 cut(s) 49, 414, 708
MlyI GAGTC 2 cut(s) 1361, 1429
MmeI TCCRAC 2 cut(s) 590, 911
Mph1103I ATGCAT 1 cut(s) 1716
MroXI GAANNNNTTC 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 2 cut(s) 301, 1681
MspR9I CCNGG 5 cut(s) 81, 90, 302, 686, 1688
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 2 cut(s) 84, 302
MvaI CCWGG 4 cut(s) 81, 90, 686, 1688
NciI CCSGG 1 cut(s) 302
NdeI CATATG 2 cut(s) 459, 1336
NlaIII CATG 4 cut(s) 296, 944, 1321, 1636
NlaIV GGNNCC 5 cut(s) 208, 1119, 1230, 1342, 1685
NmuCI GTSAC 2 cut(s) 185, 1635
NsiI ATGCAT 1 cut(s) 1716
PaeR7I CTCGAG 1 cut(s) 1233
PagI TCATGA 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 2 cut(s) 84, 302
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 6 cut(s) 491, 871, 1283, 1474, 1670, 1748
PleI GAGTC 2 cut(s) 1360, 1429
PpsI GAGTC 2 cut(s) 1360, 1429
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 4 cut(s) 79, 88, 684, 1686
PspGI CCWGG 4 cut(s) 79, 88, 684, 1686
PspN4I GGNNCC 5 cut(s) 208, 1119, 1230, 1342, 1685
PstI CTGCAG 2 cut(s) 337, 450
PstNI CAGNNNCTG 3 cut(s) 341, 494, 800
PsuI RGATCY 5 cut(s) 206, 657, 945, 1075, 1228
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 541, 769, 1453
RsaNI GTAC 3 cut(s) 540, 768, 1452
SacI GAGCTC 1 cut(s) 414
SchI GAGTC 2 cut(s) 1361, 1429
ScrFI CCNGG 5 cut(s) 81, 90, 302, 686, 1688
SduI GDGCHC 3 cut(s) 49, 414, 708
SexAI ACCWGGT 1 cut(s) 1686
SfaNI GCATC 6 cut(s) 49, 1540, 1618, 1717, 1723, 1773
SfcI CTRYAG 3 cut(s) 333, 446, 980
Sfr274I CTCGAG 1 cut(s) 1233
SlaI CTCGAG 1 cut(s) 1233
SmlI CTYRAG 1 cut(s) 1233
SmoI CTYRAG 1 cut(s) 1233
SpeI ACTAGT 1 cut(s) 700
SsiI CCGC 4 cut(s) 62, 791, 1105, 1730
SspI AATATT 3 cut(s) 743, 846, 1444
SspMI CTAG 4 cut(s) 510, 701, 1449, 1655
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 5 cut(s) 79, 88, 300, 684, 1686
StyI CCWWGG 2 cut(s) 198, 910
TaaI ACNGT 5 cut(s) 440, 767, 1057, 1396, 1499
TaiI ACGT 2 cut(s) 146, 629
TaqI TCGA 6 cut(s) 26, 874, 1186, 1234, 1538, 1648
TauI GCSGC 3 cut(s) 65, 794, 1733
TfiI GAWTC 6 cut(s) 491, 871, 1283, 1474, 1670, 1748
TscAI CASTG 5 cut(s) 400, 445, 481, 979, 1330
TseFI GTSAC 2 cut(s) 185, 1635
TseI GCWGC 9 cut(s) 237, 332, 341, 398, 782, 800, 1314, 1528, 1769
Tsp45I GTSAC 2 cut(s) 185, 1635
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 5 cut(s) 400, 445, 481, 979, 1330
VneI GTGCAC 1 cut(s) 45
XagI CCTNNNNNAGG 1 cut(s) 326
XapI RAATTY 3 cut(s) 571, 755, 1387
XhoI CTCGAG 1 cut(s) 1233
XmiI GTMKAC 2 cut(s) 146, 1574
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 4 cut(s) 510, 701, 1449, 1655
Zsp2I ATGCAT 1 cut(s) 1716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.