RNA polymerase II transcription factor B subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT3G61420 AT3G61420 |
| fragaria_vesca | FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_6g25000 |
| malus_domestica | MD08G1246300.v1.1 MD15G1441400.v1.1 |
| prunus_persica | Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 |
| pyrus_communis | pycom08g21370 pycom15g38940 |
| rosa_chinensis | RchiOBHm_Chr7g0221221 |
| rosa_laevigata | RLG00000002169 |
| rosa_multiflora | Rmu_sc0000324.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00238550 |
| rosa_rugosa | Rorug07G0201400 Rorug07G0201500 |
| rosa_samantha | Rh7AG340400 Rh7BG331500 Rh7CG358300 Rh7DG339100 |
| rosa_wichuraiana | Rw7G028970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1683 |
| AccI | GTMKAC | 2 cut(s) | 146, 1574 |
| AciI | CCGC | 4 cut(s) | 62, 791, 1105, 1730 |
| AclWI | GGATC | 8 cut(s) | 131, 201, 214, 878, 953, 1070, 1223, 1236 |
| AcoI | YGGCCR | 1 cut(s) | 1706 |
| AcsI | RAATTY | 3 cut(s) | 571, 755, 1387 |
| AcuI | CTGAAG | 1 cut(s) | 1643 |
| AfaI | GTAC | 3 cut(s) | 541, 769, 1453 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 163, 328, 941, 1484, 1687 |
| AgsI | TTSAA | 8 cut(s) | 127, 576, 698, 1046, 1348, 1384, 1550, 1739 |
| AhlI | ACTAGT | 1 cut(s) | 700 |
| AjiI | CACGTC | 1 cut(s) | 144 |
| AjnI | CCWGG | 4 cut(s) | 79, 88, 684, 1686 |
| Alw21I | GWGCWC | 2 cut(s) | 49, 414 |
| Alw26I | GTCTC | 2 cut(s) | 1138, 1230 |
| Alw44I | GTGCAC | 1 cut(s) | 45 |
| AlwI | GGATC | 8 cut(s) | 131, 201, 214, 878, 953, 1070, 1223, 1236 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 341, 494, 800 |
| Ama87I | CYCGRG | 2 cut(s) | 1233, 1479 |
| AoxI | GGCC | 1 cut(s) | 1706 |
| ApaLI | GTGCAC | 1 cut(s) | 45 |
| ApeKI | GCWGC | 9 cut(s) | 237, 332, 341, 398, 782, 800, 1314, 1528, 1769 |
| ApoI | RAATTY | 3 cut(s) | 571, 755, 1387 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 759 |
| AsuC2I | CCSGG | 1 cut(s) | 302 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 674 |
| AvaI | CYCGRG | 2 cut(s) | 1233, 1479 |
| BaeGI | GKGCMC | 2 cut(s) | 49, 708 |
| BamHI | GGATCC | 2 cut(s) | 206, 1228 |
| BanI | GGYRCC | 1 cut(s) | 1683 |
| BanII | GRGCYC | 1 cut(s) | 414 |
| BbsI | GAAGAC | 1 cut(s) | 441 |
| Bbv12I | GWGCWC | 2 cut(s) | 49, 414 |
| BbvCI | CCTCAGC | 1 cut(s) | 804 |
| BbvI | GCAGC | 9 cut(s) | 249, 319, 328, 410, 769, 787, 1326, 1515, 1756 |
| BccI | CCATC | 5 cut(s) | 359, 521, 599, 950, 1055 |
| BceAI | ACGGC | 1 cut(s) | 522 |
| BciT130I | CCWGG | 4 cut(s) | 81, 90, 686, 1688 |
| BclI | TGATCA | 1 cut(s) | 937 |
| BcnI | CCSGG | 1 cut(s) | 302 |
| BcoDI | GTCTC | 2 cut(s) | 1138, 1230 |
| BcuI | ACTAGT | 1 cut(s) | 700 |
| BfaI | CTAG | 4 cut(s) | 510, 701, 1449, 1655 |
| BfmI | CTRYAG | 3 cut(s) | 333, 446, 980 |
| BglII | AGATCT | 1 cut(s) | 657 |
| Bme1390I | CCNGG | 5 cut(s) | 81, 90, 302, 686, 1688 |
| BmeT110I | CYCGRG | 2 cut(s) | 1233, 1479 |
| BmgBI | CACGTC | 1 cut(s) | 144 |
| BmiI | GGNNCC | 5 cut(s) | 208, 1119, 1230, 1342, 1685 |
| BmrFI | CCNGG | 5 cut(s) | 81, 90, 302, 686, 1688 |
| BmrI | ACTGGG | 1 cut(s) | 702 |
| BmsI | GCATC | 6 cut(s) | 49, 1540, 1618, 1717, 1723, 1773 |
| BmuI | ACTGGG | 1 cut(s) | 702 |
| BpiI | GAAGAC | 1 cut(s) | 441 |
| BpmI | CTGGAG | 1 cut(s) | 624 |
| Bpu10I | CCTNAGC | 1 cut(s) | 804 |
| BpuMI | CCSGG | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 4 cut(s) | 79, 198, 910, 1478 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 163, 328, 941, 1484, 1687 |
| Bse1I | ACTGG | 2 cut(s) | 708, 822 |
| Bse3DI | GCAATG | 2 cut(s) | 322, 374 |
| BseBI | CCWGG | 4 cut(s) | 81, 90, 686, 1688 |
| BseDI | CCNNGG | 4 cut(s) | 79, 198, 910, 1478 |
| BseGI | GGATG | 9 cut(s) | 64, 618, 814, 844, 922, 1170, 1201, 1285, 1633 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 163, 328, 941, 1484, 1687 |
| BseMI | GCAATG | 2 cut(s) | 322, 374 |
| BseMII | CTCAG | 7 cut(s) | 247, 406, 486, 795, 1317, 1451, 1550 |
| BseNI | ACTGG | 2 cut(s) | 708, 822 |
| BseRI | GAGGAG | 1 cut(s) | 1673 |
| BseSI | GKGCMC | 2 cut(s) | 49, 708 |
| BseXI | GCAGC | 9 cut(s) | 249, 319, 328, 410, 769, 787, 1326, 1515, 1756 |
| BsgI | GTGCAG | 2 cut(s) | 417, 1157 |
| BshFI | GGCC | 1 cut(s) | 1708 |
| BshNI | GGYRCC | 1 cut(s) | 1683 |
| BsiHKAI | GWGCWC | 2 cut(s) | 49, 414 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1233, 1479 |
| BsiSI | CCGG | 2 cut(s) | 301, 1681 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 163, 328, 941, 1484, 1687 |
| BsmAI | GTCTC | 2 cut(s) | 1138, 1230 |
| BsmI | GAATGC | 2 cut(s) | 84, 302 |
| BsnI | GGCC | 1 cut(s) | 1708 |
| BsoBI | CYCGRG | 2 cut(s) | 1233, 1479 |
| Bsp1286I | GDGCHC | 3 cut(s) | 49, 414, 708 |
| BspACI | CCGC | 4 cut(s) | 62, 791, 1105, 1730 |
| BspANI | GGCC | 1 cut(s) | 1708 |
| BspCNI | CTCAG | 7 cut(s) | 246, 405, 487, 796, 1318, 1450, 1551 |
| BspHI | TCATGA | 1 cut(s) | 292 |
| BspLI | GGNNCC | 5 cut(s) | 208, 1119, 1230, 1342, 1685 |
| BspMAI | CTGCAG | 2 cut(s) | 337, 450 |
| BspPI | GGATC | 8 cut(s) | 131, 201, 214, 878, 953, 1070, 1223, 1236 |
| BspT107I | GGYRCC | 1 cut(s) | 1683 |
| BsrDI | GCAATG | 2 cut(s) | 322, 374 |
| BsrI | ACTGG | 2 cut(s) | 708, 822 |
| BssECI | CCNNGG | 4 cut(s) | 79, 198, 910, 1478 |
| BssT1I | CCWWGG | 2 cut(s) | 198, 910 |
| Bst2UI | CCWGG | 4 cut(s) | 81, 90, 686, 1688 |
| Bst4CI | ACNGT | 5 cut(s) | 440, 767, 1057, 1396, 1499 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 341, 350, 800, 1727 |
| BstC8I | GCNNGC | 2 cut(s) | 45, 216 |
| BstDEI | CTNAG | 9 cut(s) | 233, 327, 357, 392, 495, 804, 1326, 1437, 1559 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 326 |
| BstF5I | GGATG | 9 cut(s) | 64, 618, 814, 844, 922, 1170, 1201, 1285, 1633 |
| BstMAI | GTCTC | 2 cut(s) | 1138, 1230 |
| BstNI | CCWGG | 4 cut(s) | 81, 90, 686, 1688 |
| BstSCI | CCNGG | 5 cut(s) | 79, 88, 300, 684, 1686 |
| BstSFI | CTRYAG | 3 cut(s) | 333, 446, 980 |
| BstSLI | GKGCMC | 2 cut(s) | 49, 708 |
| BstV1I | GCAGC | 9 cut(s) | 249, 319, 328, 410, 769, 787, 1326, 1515, 1756 |
| BstV2I | GAAGAC | 1 cut(s) | 441 |
| BstX2I | RGATCY | 5 cut(s) | 206, 657, 945, 1075, 1228 |
| BstYI | RGATCY | 5 cut(s) | 206, 657, 945, 1075, 1228 |
| BsuRI | GGCC | 1 cut(s) | 1708 |
| BtrI | CACGTC | 1 cut(s) | 144 |
| BtsCI | GGATG | 9 cut(s) | 64, 618, 814, 844, 922, 1170, 1201, 1285, 1633 |
| BtsIMutI | CAGTG | 5 cut(s) | 400, 445, 481, 972, 1323 |
| Cac8I | GCNNGC | 2 cut(s) | 45, 216 |
| CaiI | CAGNNNCTG | 3 cut(s) | 341, 494, 800 |
| CciI | TCATGA | 1 cut(s) | 292 |
| CsiI | ACCWGGT | 1 cut(s) | 1686 |
| Csp6I | GTAC | 3 cut(s) | 540, 768, 1452 |
| CviAII | CATG | 4 cut(s) | 293, 941, 1318, 1633 |
| CviQI | GTAC | 3 cut(s) | 540, 768, 1452 |
| DdeI | CTNAG | 9 cut(s) | 233, 327, 357, 392, 495, 804, 1326, 1437, 1559 |
| DraI | TTTAAA | 3 cut(s) | 274, 568, 831 |
| EaeI | YGGCCR | 1 cut(s) | 1706 |
| Ecl136II | GAGCTC | 1 cut(s) | 412 |
| Eco130I | CCWWGG | 2 cut(s) | 198, 910 |
| Eco24I | GRGCYC | 1 cut(s) | 414 |
| Eco53kI | GAGCTC | 1 cut(s) | 412 |
| Eco57I | CTGAAG | 1 cut(s) | 1643 |
| Eco88I | CYCGRG | 2 cut(s) | 1233, 1479 |
| EcoICRI | GAGCTC | 1 cut(s) | 412 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 326 |
| EcoRI | GAATTC | 1 cut(s) | 755 |
| EcoRII | CCWGG | 4 cut(s) | 79, 88, 684, 1686 |
| EcoT14I | CCWWGG | 2 cut(s) | 198, 910 |
| EcoT22I | ATGCAT | 1 cut(s) | 1716 |
| EcoT38I | GRGCYC | 1 cut(s) | 414 |
| ErhI | CCWWGG | 2 cut(s) | 198, 910 |
| FaeI | CATG | 4 cut(s) | 296, 944, 1321, 1636 |
| FatI | CATG | 4 cut(s) | 292, 940, 1317, 1632 |
| FauNDI | CATATG | 2 cut(s) | 459, 1336 |
| FbaI | TGATCA | 1 cut(s) | 937 |
| FblI | GTMKAC | 2 cut(s) | 146, 1574 |
| FokI | GGATG | 9 cut(s) | 71, 625, 821, 851, 929, 1177, 1188, 1292, 1640 |
| FriOI | GRGCYC | 1 cut(s) | 414 |
| FspBI | CTAG | 4 cut(s) | 510, 701, 1449, 1655 |
| GsuI | CTGGAG | 1 cut(s) | 624 |
| HaeIII | GGCC | 1 cut(s) | 1708 |
| HapII | CCGG | 2 cut(s) | 301, 1681 |
| Hin1II | CATG | 4 cut(s) | 296, 944, 1321, 1636 |
| HindIII | AAGCTT | 1 cut(s) | 1272 |
| HinfI | GANTC | 8 cut(s) | 491, 871, 1283, 1352, 1435, 1474, 1670, 1748 |
| HpaII | CCGG | 2 cut(s) | 301, 1681 |
| HphI | GGTGA | 2 cut(s) | 49, 674 |
| Hpy166II | GTNNAC | 5 cut(s) | 47, 147, 443, 682, 1575 |
| Hpy8I | GTNNAC | 5 cut(s) | 47, 147, 443, 682, 1575 |
| Hpy99I | CGWCG | 3 cut(s) | 25, 28, 879 |
| HpyAV | CCTTC | 5 cut(s) | 464, 770, 1193, 1342, 1618 |
| HpyCH4III | ACNGT | 5 cut(s) | 440, 767, 1057, 1396, 1499 |
| HpyCH4IV | ACGT | 2 cut(s) | 143, 626 |
| HpyF3I | CTNAG | 9 cut(s) | 233, 327, 357, 392, 495, 804, 1326, 1437, 1559 |
| HpySE526I | ACGT | 2 cut(s) | 143, 626 |
| Hsp92II | CATG | 4 cut(s) | 296, 944, 1321, 1636 |
| Ksp22I | TGATCA | 1 cut(s) | 937 |
| LmnI | GCTCC | 5 cut(s) | 358, 409, 417, 1117, 1346 |
| Lsp1109I | GCAGC | 9 cut(s) | 249, 319, 328, 410, 769, 787, 1326, 1515, 1756 |
| LweI | GCATC | 6 cut(s) | 49, 1540, 1618, 1717, 1723, 1773 |
| MabI | ACCWGGT | 1 cut(s) | 1686 |
| MaeI | CTAG | 4 cut(s) | 510, 701, 1449, 1655 |
| MaeII | ACGT | 2 cut(s) | 143, 626 |
| MaeIII | GTNAC | 5 cut(s) | 185, 257, 370, 622, 1635 |
| MboII | GAAGA | 8 cut(s) | 281, 446, 526, 880, 923, 1034, 1062, 1085 |
| MfeI | CAATTG | 1 cut(s) | 786 |
| MflI | RGATCY | 5 cut(s) | 206, 657, 945, 1075, 1228 |
| MhlI | GDGCHC | 3 cut(s) | 49, 414, 708 |
| MlyI | GAGTC | 2 cut(s) | 1361, 1429 |
| MmeI | TCCRAC | 2 cut(s) | 590, 911 |
| Mph1103I | ATGCAT | 1 cut(s) | 1716 |
| MroXI | GAANNNNTTC | 1 cut(s) | 759 |
| MspA1I | CMGCKG | 1 cut(s) | 677 |
| MspI | CCGG | 2 cut(s) | 301, 1681 |
| MspR9I | CCNGG | 5 cut(s) | 81, 90, 302, 686, 1688 |
| MunI | CAATTG | 1 cut(s) | 786 |
| Mva1269I | GAATGC | 2 cut(s) | 84, 302 |
| MvaI | CCWGG | 4 cut(s) | 81, 90, 686, 1688 |
| NciI | CCSGG | 1 cut(s) | 302 |
| NdeI | CATATG | 2 cut(s) | 459, 1336 |
| NlaIII | CATG | 4 cut(s) | 296, 944, 1321, 1636 |
| NlaIV | GGNNCC | 5 cut(s) | 208, 1119, 1230, 1342, 1685 |
| NmuCI | GTSAC | 2 cut(s) | 185, 1635 |
| NsiI | ATGCAT | 1 cut(s) | 1716 |
| PaeR7I | CTCGAG | 1 cut(s) | 1233 |
| PagI | TCATGA | 1 cut(s) | 292 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 20 |
| PctI | GAATGC | 2 cut(s) | 84, 302 |
| PdmI | GAANNNNTTC | 1 cut(s) | 759 |
| PfeI | GAWTC | 6 cut(s) | 491, 871, 1283, 1474, 1670, 1748 |
| PleI | GAGTC | 2 cut(s) | 1360, 1429 |
| PpsI | GAGTC | 2 cut(s) | 1360, 1429 |
| Psp124BI | GAGCTC | 1 cut(s) | 414 |
| Psp6I | CCWGG | 4 cut(s) | 79, 88, 684, 1686 |
| PspGI | CCWGG | 4 cut(s) | 79, 88, 684, 1686 |
| PspN4I | GGNNCC | 5 cut(s) | 208, 1119, 1230, 1342, 1685 |
| PstI | CTGCAG | 2 cut(s) | 337, 450 |
| PstNI | CAGNNNCTG | 3 cut(s) | 341, 494, 800 |
| PsuI | RGATCY | 5 cut(s) | 206, 657, 945, 1075, 1228 |
| PvuII | CAGCTG | 1 cut(s) | 677 |
| RsaI | GTAC | 3 cut(s) | 541, 769, 1453 |
| RsaNI | GTAC | 3 cut(s) | 540, 768, 1452 |
| SacI | GAGCTC | 1 cut(s) | 414 |
| SchI | GAGTC | 2 cut(s) | 1361, 1429 |
| ScrFI | CCNGG | 5 cut(s) | 81, 90, 302, 686, 1688 |
| SduI | GDGCHC | 3 cut(s) | 49, 414, 708 |
| SexAI | ACCWGGT | 1 cut(s) | 1686 |
| SfaNI | GCATC | 6 cut(s) | 49, 1540, 1618, 1717, 1723, 1773 |
| SfcI | CTRYAG | 3 cut(s) | 333, 446, 980 |
| Sfr274I | CTCGAG | 1 cut(s) | 1233 |
| SlaI | CTCGAG | 1 cut(s) | 1233 |
| SmlI | CTYRAG | 1 cut(s) | 1233 |
| SmoI | CTYRAG | 1 cut(s) | 1233 |
| SpeI | ACTAGT | 1 cut(s) | 700 |
| SsiI | CCGC | 4 cut(s) | 62, 791, 1105, 1730 |
| SspI | AATATT | 3 cut(s) | 743, 846, 1444 |
| SspMI | CTAG | 4 cut(s) | 510, 701, 1449, 1655 |
| SstI | GAGCTC | 1 cut(s) | 414 |
| StyD4I | CCNGG | 5 cut(s) | 79, 88, 300, 684, 1686 |
| StyI | CCWWGG | 2 cut(s) | 198, 910 |
| TaaI | ACNGT | 5 cut(s) | 440, 767, 1057, 1396, 1499 |
| TaiI | ACGT | 2 cut(s) | 146, 629 |
| TaqI | TCGA | 6 cut(s) | 26, 874, 1186, 1234, 1538, 1648 |
| TauI | GCSGC | 3 cut(s) | 65, 794, 1733 |
| TfiI | GAWTC | 6 cut(s) | 491, 871, 1283, 1474, 1670, 1748 |
| TscAI | CASTG | 5 cut(s) | 400, 445, 481, 979, 1330 |
| TseFI | GTSAC | 2 cut(s) | 185, 1635 |
| TseI | GCWGC | 9 cut(s) | 237, 332, 341, 398, 782, 800, 1314, 1528, 1769 |
| Tsp45I | GTSAC | 2 cut(s) | 185, 1635 |
| TspGWI | ACGGA | 1 cut(s) | 404 |
| TspRI | CASTG | 5 cut(s) | 400, 445, 481, 979, 1330 |
| VneI | GTGCAC | 1 cut(s) | 45 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 326 |
| XapI | RAATTY | 3 cut(s) | 571, 755, 1387 |
| XhoI | CTCGAG | 1 cut(s) | 1233 |
| XmiI | GTMKAC | 2 cut(s) | 146, 1574 |
| XmnI | GAANNNNTTC | 1 cut(s) | 759 |
| XspI | CTAG | 4 cut(s) | 510, 701, 1449, 1655 |
| Zsp2I | ATGCAT | 1 cut(s) | 1716 |