Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003669

Physical Location & Seq

Genomic Coordinates Forward (+)

54111219 .. 54119232

Gene Structure 8014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1441400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGTCGTCGTCGTCGTCGTCGTCGTCGTCCAGGCGAGTCGTGAAGCGTGTAAAATACAAGGATGCAGTAAAAAATCCTGGCACTCCCGGCGTTTTAACCATGGTTGAGAACAGGTTTGTGTTCAAGCCAAACGATCCCACGTCTGCCAGAATGCTTGATGTGGAGTTTAGACATATTAAAGGTCACAAAAACACTAAGGAGGGATCCAAGCAACCACCTTTGCTTAATCTCAGCAGCAGTCGTGAGGGTATAAGTTACATTTTTGAGTTTCAAAGTTATCCCGATCTTCATGAATGCCGAGATTTTGTAGGCAATGCCCTATCTAAGGCTACAGAAACTGCAAAAACTGCTTCTGAGAGAGATGGAGTTACATTCCCTGATGAACAACTCAGTGCAGCAGAAATGGAGCTCCGTATGAAGTTATTGCAAGAGGACAGTGAATTGCAGAAACTTCATATGCAGTTTGTAATCAGTGGTGTCTTGACAGAATCTGAGTTCTGGGCAACTAGGAAGTTGCTTGATGGAGATAGCCGTACAAAGCCAAAACAACGGGTTGGTTTTAAAAATTCAATGATTTTGGACACCAAACCTACAAGTGACGGTCGGATGAACAAGGTTACATTTAATTTCACTCCAGAGATTAAATATCAGATCTTTGCTCTCAAACCAGCTGTTCACCAGGCATTTCTTAAACTAGTGCCCAGTAAGGTAATGACAGAAAAAGACTTCTGGACAAAATATTTCAGAGCTGAATTCCTCCACAGTACCAAGAATGCTGCTACAATTGCAGCAGAAGCTGCTGAGGATGAGGAACTGGCAATTTTTTTAAAGGAGGATGAAATAGTGGCAAGGGAAGCTCGTTGGAAGATTCGACGGGTTGATCCAACTTTGGATATGGAAGCTGACCAAGGGGATGATTATACACATCTTCCTGATCATGGGATTTTTCGTGATGGTAGCAAAGACATCACTGAACTGCAGAATGAGCAGTACAGGAGGACTTTATCGCAAGACCTTAACAGGCAAGGGGCTGTTGTTCTTCAAGGAAGAACTGTCGATGGGGATTTAGAAGATCCAGAAAATGTTGCAGAGGCACTTATGCGGTCAAGACAGGAGCCTGATGAGAGTGCTGTGCAGGAGAGACTAGATAGGATTACTCGGATGAATGAGATAGATGACCTTCGAGAACCTCGCGATCATCCTGTTGCTCAATTATGTATTAAGGATCCTCGAGACTACTTTGATACGCAACAAGCTAATGCACTTAAAACTTCGGATGACTCACGAATTGGAATTGAACAAAAAAAATGTAGCATGACTACTGAGGAAGCATATGGCTCATTGAGGGAGTCTATATCTAAAATTAAGAGCATTGGATTGAAAAATTCCACGGTTGAATCAGAAATTGCTCTTACGGTTCTTAATGGGCTGACTCAGAATATTTCAAGTACCAAGTATCAACTTGGAAAGAATCCTCGGGAGAGTATTCTGGACAGTTTGCCAAACAGAACGAAAGAGGAACTGTTGCATCATTGGATGTCCATTCAAGAATTACTGCGGCATTTTTGGTCTTCATATCCAATTACGACAGCTTATCTTTCTACAAAGGTAGGCAAACTGAAGGATGCCATGTCACAAATCTATCGACAGCTAGAGGAGATAAAGGAATCAGACTTCCGGCACCAGGTTTCACTCCTTGTTCGTCCAATGCATCAGGCTCTTGATGCGGCCTTTCAACATTATGAATCTGACTTGCAGAAAAGAGCTGCAAGGAGTGCAGAGATGCCGAATGGAAATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006357 GO:0006360 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

BSD PH_TFIIH

Protein Analysis

601

Amino Acids

68.51

Weight (kDa)

6.17

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_TFIIH	PF08567	28 - 102	2e-06	TFIIH p62 subunit, N-terminal domain
BSD	PF03909	207 - 258	1.7e-08	BSD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT3G61420 AT3G61420
fragaria_vesca	FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_6g25000
malus_domestica	MD08G1246300.v1.1 MD15G1441400.v1.1
prunus_persica	Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1
pyrus_communis	pycom08g21370 pycom15g38940
rosa_chinensis	RchiOBHm_Chr7g0221221
rosa_laevigata	RLG00000002169
rosa_multiflora	Rmu_sc0000324.1_g000015
rosa_roxburghii	Rroxscaffold_3G00238550
rosa_rugosa	Rorug07G0201400 Rorug07G0201500
rosa_samantha	Rh7AG340400 Rh7BG331500 Rh7CG358300 Rh7DG339100
rosa_wichuraiana	Rw7G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1680
AccII	CGCG	1 cut(s)	1194
AciI	CCGC	3 cut(s)	1102, 1558, 1727
AclWI	GGATC	7 cut(s)	128, 198, 211, 875, 1067, 1220, 1233
AcsI	RAATTY	3 cut(s)	565, 752, 1384
AcuI	CTGAAG	1 cut(s)	1640
AfaI	GTAC	4 cut(s)	535, 766, 992, 1450
AfiI	CCNNNNNNNGG	3 cut(s)	325, 938, 1684
AhlI	ACTAGT	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	141
AjnI	CCWGG	4 cut(s)	29, 76, 678, 1683
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	1135, 1227
AlwI	GGATC	7 cut(s)	128, 198, 211, 875, 1067, 1220, 1233
AlwNI	CAGNNNCTG	3 cut(s)	338, 491, 797
Ama87I	CYCGRG	2 cut(s)	1230, 1476
AoxI	GGCC	1 cut(s)	1728
ApeKI	GCWGC	6 cut(s)	234, 395, 776, 788, 797, 1766
ApoI	RAATTY	3 cut(s)	565, 752, 1384
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	668
AvaI	CYCGRG	2 cut(s)	1230, 1476
BaeGI	GKGCMC	1 cut(s)	702
BamHI	GGATCC	2 cut(s)	203, 1225
BanI	GGYRCC	1 cut(s)	1680
BanII	GRGCYC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	1563
Bbv12I	GWGCWC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	801
BbvI	GCAGC	6 cut(s)	246, 407, 763, 784, 800, 1753
BccI	CCATC	4 cut(s)	356, 515, 947, 1052
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	4 cut(s)	31, 78, 680, 1685
BclI	TGATCA	1 cut(s)	934
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	1135, 1227
BcuI	ACTAGT	1 cut(s)	694
BfaI	CTAG	4 cut(s)	507, 695, 1145, 1652
BfmI	CTRYAG	2 cut(s)	330, 977
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	8 cut(s)	235, 396, 777, 789, 798, 1559, 1728, 1767
BlsI	GCNGC	8 cut(s)	236, 397, 778, 790, 799, 1560, 1729, 1768
Bme1390I	CCNGG	5 cut(s)	31, 78, 87, 680, 1685
BmeT110I	CYCGRG	2 cut(s)	1230, 1476
BmgBI	CACGTC	1 cut(s)	141
BmiI	GGNNCC	4 cut(s)	205, 1116, 1227, 1682
BmrFI	CCNGG	5 cut(s)	31, 78, 87, 680, 1685
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	6 cut(s)	52, 1537, 1615, 1714, 1720, 1773
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	1563
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	801
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	99, 907, 1389, 1475
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 938, 1684
Bse1I	ACTGG	2 cut(s)	702, 819
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	4 cut(s)	31, 78, 680, 1685
BseDI	CCNNGG	4 cut(s)	99, 907, 1389, 1475
BseLI	CCNNNNNNNGG	3 cut(s)	325, 938, 1684
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	7 cut(s)	244, 345, 403, 483, 792, 1314, 1448
BseNI	ACTGG	2 cut(s)	702, 819
BseRI	GAGGAG	1 cut(s)	1670
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	6 cut(s)	246, 407, 763, 784, 800, 1753
BsgI	GTGCAG	3 cut(s)	414, 1154, 1797
Bsh1236I	CGCG	1 cut(s)	1194
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	1 cut(s)	1730
BshNI	GGYRCC	1 cut(s)	1680
BsiEI	CGRYCG	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	2 cut(s)	1230, 1476
BsiSI	CCGG	2 cut(s)	87, 1678
BslI	CCNNNNNNNGG	3 cut(s)	325, 938, 1684
BsmAI	GTCTC	2 cut(s)	1135, 1227
BsmI	GAATGC	3 cut(s)	156, 299, 778
BsnI	GGCC	1 cut(s)	1730
BsoBI	CYCGRG	2 cut(s)	1230, 1476
Bsp1286I	GDGCHC	2 cut(s)	411, 702
Bsp143I	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
Bsp19I	CCATGG	1 cut(s)	99
Bsp68I	TCGCGA	1 cut(s)	1194
BspACI	CCGC	3 cut(s)	1102, 1558, 1727
BspANI	GGCC	1 cut(s)	1730
BspCNI	CTCAG	7 cut(s)	243, 346, 402, 484, 793, 1315, 1447
BspFNI	CGCG	1 cut(s)	1194
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	4 cut(s)	205, 1116, 1227, 1682
BspMAI	CTGCAG	1 cut(s)	981
BspPI	GGATC	7 cut(s)	128, 198, 211, 875, 1067, 1220, 1233
BspT107I	GGYRCC	1 cut(s)	1680
BsrDI	GCAATG	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	702, 819
BssECI	CCNNGG	4 cut(s)	99, 907, 1389, 1475
BssMI	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
BssT1I	CCWWGG	2 cut(s)	99, 907
Bst2UI	CCWGG	4 cut(s)	31, 78, 680, 1685
Bst4CI	ACNGT	8 cut(s)	437, 602, 764, 1054, 1393, 1417, 1496, 1524
BstAPI	GCANNNNNTGC	3 cut(s)	347, 797, 1775
BstDEI	CTNAG	9 cut(s)	195, 230, 324, 354, 389, 492, 801, 1323, 1434
BstDSI	CCRYGG	2 cut(s)	99, 1389
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	1194
BstKTI	GATC	9 cut(s)	136, 206, 286, 654, 883, 937, 1075, 1198, 1228
BstMAI	GTCTC	2 cut(s)	1135, 1227
BstMBI	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 347, 785, 794, 797, 854, 985, 1724, 1775
BstNI	CCWGG	4 cut(s)	31, 78, 680, 1685
BstSCI	CCNGG	5 cut(s)	29, 76, 85, 678, 1683
BstSFI	CTRYAG	2 cut(s)	330, 977
BstSLI	GKGCMC	1 cut(s)	702
BstUI	CGCG	1 cut(s)	1194
BstV1I	GCAGC	6 cut(s)	246, 407, 763, 784, 800, 1753
BstV2I	GAAGAC	1 cut(s)	1563
BstX2I	RGATCY	4 cut(s)	203, 651, 1072, 1225
BstYI	RGATCY	4 cut(s)	203, 651, 1072, 1225
BsuRI	GGCC	1 cut(s)	1730
BtgI	CCRYGG	2 cut(s)	99, 1389
BtrI	CACGTC	1 cut(s)	141
BtsIMutI	CAGTG	4 cut(s)	397, 442, 478, 969
BtuMI	TCGCGA	1 cut(s)	1194
CaiI	CAGNNNCTG	3 cut(s)	338, 491, 797
CciI	TCATGA	1 cut(s)	289
CsiI	ACCWGGT	1 cut(s)	1683
Csp6I	GTAC	4 cut(s)	534, 765, 991, 1449
CviAII	CATG	5 cut(s)	100, 290, 938, 1315, 1630
CviQI	GTAC	4 cut(s)	534, 765, 991, 1449
DdeI	CTNAG	9 cut(s)	195, 230, 324, 354, 389, 492, 801, 1323, 1434
DpnI	GATC	9 cut(s)	135, 205, 285, 653, 882, 936, 1074, 1197, 1227
DpnII	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
DraI	TTTAAA	2 cut(s)	562, 828
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	99, 907
Eco24I	GRGCYC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	1640
Eco88I	CYCGRG	2 cut(s)	1230, 1476
EcoICRI	GAGCTC	1 cut(s)	409
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	752
EcoRII	CCWGG	4 cut(s)	29, 76, 678, 1683
EcoT14I	CCWWGG	2 cut(s)	99, 907
EcoT22I	ATGCAT	1 cut(s)	1713
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	2 cut(s)	99, 907
FaeI	CATG	5 cut(s)	103, 293, 941, 1318, 1633
FatI	CATG	5 cut(s)	99, 289, 937, 1314, 1629
FauNDI	CATATG	2 cut(s)	456, 1333
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	8 cut(s)	235, 396, 777, 789, 798, 1559, 1728, 1767
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	8 cut(s)	235, 396, 777, 789, 798, 1559, 1728, 1767
FspBI	CTAG	4 cut(s)	507, 695, 1145, 1652
GluI	GCNGC	8 cut(s)	235, 396, 777, 789, 798, 1559, 1728, 1767
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	1730
HapII	CCGG	2 cut(s)	87, 1678
Hin1II	CATG	5 cut(s)	103, 293, 941, 1318, 1633
HpaII	CCGG	2 cut(s)	87, 1678
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	676
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	8 cut(s)	10, 13, 16, 19, 22, 25, 28, 876
HpyAV	CCTTC	2 cut(s)	1190, 1615
HpyCH4III	ACNGT	8 cut(s)	437, 602, 764, 1054, 1393, 1417, 1496, 1524
HpyCH4IV	ACGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 347, 785, 794, 797, 854, 985, 1724, 1775
HpyF3I	CTNAG	9 cut(s)	195, 230, 324, 354, 389, 492, 801, 1323, 1434
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	103, 293, 941, 1318, 1633
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
LmnI	GCTCC	3 cut(s)	406, 414, 1114
Lsp1109I	GCAGC	6 cut(s)	246, 407, 763, 784, 800, 1753
LweI	GCATC	6 cut(s)	52, 1537, 1615, 1714, 1720, 1773
MabI	ACCWGGT	1 cut(s)	1683
MaeI	CTAG	4 cut(s)	507, 695, 1145, 1652
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	6 cut(s)	182, 254, 367, 596, 616, 1632
MalI	GATC	9 cut(s)	135, 205, 285, 653, 882, 936, 1074, 1197, 1227
MboI	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
MboII	GAAGA	7 cut(s)	278, 877, 920, 1031, 1059, 1082, 1563
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	4 cut(s)	203, 651, 1072, 1225
MhlI	GDGCHC	2 cut(s)	411, 702
MlyI	GAGTC	4 cut(s)	45, 1274, 1358, 1426
MmeI	TCCRAC	3 cut(s)	584, 842, 908
Mph1103I	ATGCAT	1 cut(s)	1713
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	2 cut(s)	87, 1678
MspR9I	CCNGG	5 cut(s)	31, 78, 87, 680, 1685
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	3 cut(s)	156, 299, 778
MvaI	CCWGG	4 cut(s)	31, 78, 680, 1685
MvnI	CGCG	1 cut(s)	1194
MwoI	GCNNNNNNNGC	9 cut(s)	87, 347, 785, 794, 797, 854, 985, 1724, 1775
NciI	CCSGG	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	99
NdeI	CATATG	2 cut(s)	456, 1333
NdeII	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
NlaIII	CATG	5 cut(s)	103, 293, 941, 1318, 1633
NlaIV	GGNNCC	4 cut(s)	205, 1116, 1227, 1682
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	3 cut(s)	182, 596, 1632
NruI	TCGCGA	1 cut(s)	1194
NsiI	ATGCAT	1 cut(s)	1713
PaeR7I	CTCGAG	1 cut(s)	1230
PagI	TCATGA	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	5 cut(s)	11, 14, 17, 20, 23
PctI	GAATGC	3 cut(s)	156, 299, 778
PfeI	GAWTC	6 cut(s)	488, 868, 1397, 1471, 1667, 1745
PkrI	GCNGC	8 cut(s)	236, 397, 778, 790, 799, 1560, 1729, 1768
PleI	GAGTC	4 cut(s)	44, 1274, 1357, 1426
PpsI	GAGTC	4 cut(s)	44, 1274, 1357, 1426
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	4 cut(s)	29, 76, 678, 1683
PspGI	CCWGG	4 cut(s)	29, 76, 678, 1683
PspN4I	GGNNCC	4 cut(s)	205, 1116, 1227, 1682
PstI	CTGCAG	1 cut(s)	981
PstNI	CAGNNNCTG	3 cut(s)	338, 491, 797
PsuI	RGATCY	4 cut(s)	203, 651, 1072, 1225
PvuII	CAGCTG	1 cut(s)	671
RruI	TCGCGA	1 cut(s)	1194
RsaI	GTAC	4 cut(s)	535, 766, 992, 1450
RsaNI	GTAC	4 cut(s)	534, 765, 991, 1449
SacI	GAGCTC	1 cut(s)	411
SatI	GCNGC	8 cut(s)	235, 396, 777, 789, 798, 1559, 1728, 1767
Sau3AI	GATC	9 cut(s)	133, 203, 283, 651, 880, 934, 1072, 1195, 1225
SchI	GAGTC	4 cut(s)	45, 1274, 1358, 1426
ScrFI	CCNGG	5 cut(s)	31, 78, 87, 680, 1685
SduI	GDGCHC	2 cut(s)	411, 702
SexAI	ACCWGGT	1 cut(s)	1683
SfaNI	GCATC	6 cut(s)	52, 1537, 1615, 1714, 1720, 1773
SfcI	CTRYAG	2 cut(s)	330, 977
Sfr274I	CTCGAG	1 cut(s)	1230
SlaI	CTCGAG	1 cut(s)	1230
SmlI	CTYRAG	1 cut(s)	1230
SmoI	CTYRAG	1 cut(s)	1230
SpeI	ACTAGT	1 cut(s)	694
SsiI	CCGC	3 cut(s)	1102, 1558, 1727
SspI	AATATT	2 cut(s)	740, 1441
SspMI	CTAG	4 cut(s)	507, 695, 1145, 1652
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	5 cut(s)	29, 76, 85, 678, 1683
StyI	CCWWGG	2 cut(s)	99, 907
TaaI	ACNGT	8 cut(s)	437, 602, 764, 1054, 1393, 1417, 1496, 1524
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	5 cut(s)	871, 1056, 1183, 1231, 1645
TatI	WGTACW	1 cut(s)	990
TauI	GCSGC	2 cut(s)	1561, 1730
TfiI	GAWTC	6 cut(s)	488, 868, 1397, 1471, 1667, 1745
TscAI	CASTG	4 cut(s)	397, 442, 478, 976
TseFI	GTSAC	3 cut(s)	182, 596, 1632
TseI	GCWGC	6 cut(s)	234, 395, 776, 788, 797, 1766
Tsp45I	GTSAC	3 cut(s)	182, 596, 1632
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	4 cut(s)	397, 442, 478, 976
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	3 cut(s)	565, 752, 1384
XhoI	CTCGAG	1 cut(s)	1230
XspI	CTAG	4 cut(s)	507, 695, 1145, 1652
Zsp2I	ATGCAT	1 cut(s)	1713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.