Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003669

Physical Location & Seq

Genomic Coordinates Forward (+)

44638833 .. 44648165

Gene Structure 9333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG339100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGTCGACCCCGCAAGTGATTAAGCGTGCAAAATACAAGACTTCAATTAAAGACCCGGGAACTCCTGGTCTTCTAACCATGATGGAGAACAGGTTTGTGTTCAGGCCAAATGATCCCACGTCTCCCTCTAAGCTTGATGTCGGCTTTCATCAAATTAAAGGTCAGAAGAACACTAAGGAGGGATCAAATAAACCACCTTGGCTTAATATTAGCAATAATAAGGATGGGAGTTACATTTTTGAGTTTGAGAGTTATCCTGATCTTCATGCATGCCGAGAAATTATTGCCAACGCCCTTGAGGCTGCAAAAGGTTCTTCCACTGCAACAATTTCTTCTACAGCAAAAGCTTCTTCTTCTACAAATGAACAATATAGTACAGCAGAGTTAGAGCTCCGGATGAAGCTTATGCAAGAAGACAGTGAACTGCAGAAACTTCACAAGCAGTTTGTAGGCAGTGGTGTCTTGACAGAATCTGAGTTCTGGGCAACCAGGAAGAAGTTGCTTGATGGAGATAGCCGTAAAAAGTCAAAACAACGGGTTGGTTTTAAAAGTTCGATGATACTGGACATCAAACCTATGACTGATGGTCGGATGAACAAGGTTACATTCAATTTGACTGATGAGATTAAATATCAGATTTTCGCCCTGAAACCAGCAGTTCACCAGGCATATATCGATCTCGTTCCCAGTAAGATGACAGAGAAAGACTTCTGGAACAAATATTTTCGAGCCGAATACCTCCACAGTACAAAAAATGTTGTAGCAGCTGCGGCAGAAGCTGCTGAGGATGAGGAACTGGCGATTTTTTTAAAGGAAGATGAAATATTGGCAAGGGAAGCTCGGCAGAAGATTCAGCAGGTTGATCCAACTTTGGATATGGAAGCTGATCAAGGGGATGACTATATACATCTTCCGGATCATGGGATCTTTCGTGATGGCACCAAGGACATAACTGAACTACAGAATGATCAATACAGGAGGACTCTATCGCAAGACCTTAACAGACAAGGCGCTGTTGTTCTTCAAGGAAGAAATCTCGATGTGGACCCAGAAGATCCAAGAACTATAGCAGAGGCACTTATGCGGTCAAGACAGGAACCTAGTGACAGTGCTGTACAGGAGAGACTTGATAGGCTTACTCGGATGACTGAGATAGACGACCTTCGAGAATCTCATGATCATCCAGTTGCTCCATTGTGTATCAAGGATCCTCGAGACTACTTTGATACACAACAAGCTAATGCACTTAGAACTTTGGATGACTCGCGTACTGGTACTGAGCAGACAAAACGCAAGCTGACTACTGAGGAAGCATATGGCGCCTTAAAGGAGTCTATATCTAAAATTAAGAGCATTGGATTAAGCAATTCCACAGTTAAACCAGAAGTTGCTCTTACGGTTTTTAATGGGCTGACCCAGAATATTTCAAGTACCAAATATCAACTTGGAAAGAATCCTCGAGAGAGTATTCTGGATGGCTTGCCAAACAGAACCAAAGAGGAACTCTTACATCATTGGATGTCCATTCAAGAACTACTGAGGCATTTTTGGTCTTCATATCCAATTACAACTTCTTCTTTGTATACTAAGGTAGGCAGACTGAAGGATGCCATGTCACAAATTTATCGACAGCTAGAGGAGATAAAGGAAGCTGTGCAGTCAGACTTCAGGCACCAGGTCTCCCTCCTTGTTCGTCCAATGCATCAGGCTCTAGATGCTGCTTTTCAGCATTATGAAGCAGACTTACAGAAAAGAGCTGCAAAGAGTGGAGAGTTGCCAAATGGGAATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006357 GO:0006360 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

BSD PH_TFIIH

Protein Analysis

597

Amino Acids

67.82

Weight (kDa)

6.36

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_TFIIH	PF08567	21 - 98	1.5e-07	TFIIH p62 subunit, N-terminal domain
BSD	PF03909	200 - 251	7.4e-13	BSD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT1G55750 AT3G61420 AT3G61420
fragaria_vesca	FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_5g28910 FvH4_6g25000
malus_domestica	MD08G1246300.v1.1 MD15G1441400.v1.1
prunus_persica	Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1 Prupe.1G583500_v2.0.a1
pyrus_communis	pycom08g21370 pycom15g38940
rosa_chinensis	RchiOBHm_Chr7g0221221
rosa_laevigata	RLG00000002169
rosa_multiflora	Rmu_sc0000324.1_g000015
rosa_roxburghii	Rroxscaffold_3G00238550
rosa_rugosa	Rorug07G0201400 Rorug07G0201500
rosa_samantha	Rh7AG340400 Rh7BG331500 Rh7CG358300 Rh7DG339100
rosa_wichuraiana	Rw7G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	847
AccB1I	GGYRCC	3 cut(s)	938, 1319, 1671
AccI	GTMKAC	2 cut(s)	5, 1583
AccII	CGCG	1 cut(s)	1267
AccIII	TCCGGA	2 cut(s)	393, 913
AciI	CCGC	3 cut(s)	11, 770, 1084
AclWI	GGATC	8 cut(s)	107, 190, 857, 924, 932, 1049, 1202, 1215
AcsI	RAATTY	1 cut(s)	1620
AcuI	CTGAAG	2 cut(s)	1622, 1651
AcyI	GRCGYC	1 cut(s)	1320
AfaI	GTAC	6 cut(s)	376, 748, 1116, 1270, 1276, 1432
AfiI	CCNNNNNNNGG	1 cut(s)	920
AgsI	TTSAA	5 cut(s)	45, 610, 1025, 1428, 1529
AhdI	GACNNNNNGTC	1 cut(s)	585
AjiI	CACGTC	1 cut(s)	120
AjnI	CCWGG	4 cut(s)	64, 488, 663, 1674
AjuI	GAANNNNNNNTTGG	2 cut(s)	1555, 1587
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	4 cut(s)	126, 1117, 1209, 1684
AlwI	GGATC	8 cut(s)	107, 190, 857, 924, 932, 1049, 1202, 1215
AlwNI	CAGNNNCTG	2 cut(s)	473, 779
Ama87I	CYCGRG	3 cut(s)	55, 1212, 1458
Aor13HI	TCCGGA	2 cut(s)	393, 913
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	6 cut(s)	302, 764, 767, 779, 1718, 1757
ApoI	RAATTY	1 cut(s)	1620
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	2 cut(s)	1013, 1322
AspS9I	GGNCC	1 cut(s)	1045
AsuC2I	CCSGG	2 cut(s)	56, 57
AsuHPI	GGTGA	1 cut(s)	653
AvaI	CYCGRG	3 cut(s)	55, 1212, 1458
AvaII	GGWCC	1 cut(s)	1045
BamHI	GGATCC	1 cut(s)	1207
BanI	GGYRCC	3 cut(s)	938, 1319, 1671
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	1728, 1760
BbsI	GAAGAC	3 cut(s)	62, 420, 1545
Bbv12I	GWGCWC	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	6 cut(s)	289, 754, 766, 776, 1705, 1744
BccI	CCATC	6 cut(s)	76, 218, 500, 578, 929, 1469
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	4 cut(s)	66, 490, 665, 1676
BclI	TGATCA	3 cut(s)	886, 967, 1177
BcnI	CCSGG	2 cut(s)	56, 57
BcoDI	GTCTC	4 cut(s)	126, 1117, 1209, 1684
BfaI	CTAG	3 cut(s)	1101, 1634, 1712
BfmI	CTRYAG	4 cut(s)	336, 425, 959, 1065
BfoI	RGCGCY	2 cut(s)	1014, 1323
BfuAI	ACCTGC	1 cut(s)	847
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	7 cut(s)	303, 765, 768, 771, 780, 1719, 1758
BlsI	GCNGC	7 cut(s)	304, 766, 769, 772, 781, 1720, 1759
Bme1390I	CCNGG	6 cut(s)	56, 57, 66, 490, 665, 1676
Bme18I	GGWCC	1 cut(s)	1045
BmeRI	GACNNNNNGTC	1 cut(s)	585
BmeT110I	CYCGRG	3 cut(s)	55, 1212, 1458
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	1045
BmiI	GGNNCC	6 cut(s)	940, 1047, 1098, 1209, 1321, 1673
BmrFI	CCNGG	6 cut(s)	56, 57, 66, 490, 665, 1676
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	3 cut(s)	1597, 1705, 1711
BmuI	ACTGGG	1 cut(s)	681
BpiI	GAAGAC	3 cut(s)	62, 420, 1545
Bpu10I	CCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	2 cut(s)	56, 57
Bsa29I	ATCGAT	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	1320
BsaI	GGTCTC	1 cut(s)	1684
BsaJI	CCNNGG	3 cut(s)	55, 197, 942
BsaWI	WCCGGW	2 cut(s)	393, 913
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 1664, 1694
Bsc4I	CCNNNNNNNGG	1 cut(s)	920
Bse1I	ACTGG	5 cut(s)	567, 687, 801, 1184, 1276
BseAI	TCCGGA	2 cut(s)	393, 913
BseBI	CCWGG	4 cut(s)	66, 490, 665, 1676
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	55, 197, 942
BseLI	CCNNNNNNNGG	1 cut(s)	920
BseMII	CTCAG	6 cut(s)	465, 774, 1140, 1269, 1296, 1529
BseNI	ACTGG	5 cut(s)	567, 687, 801, 1184, 1276
BseRI	GAGGAG	1 cut(s)	1652
BseXI	GCAGC	6 cut(s)	289, 754, 766, 776, 1705, 1744
BsgI	GTGCAG	1 cut(s)	1676
Bsh1236I	CGCG	1 cut(s)	1267
BshFI	GGCC	1 cut(s)	106
BshNI	GGYRCC	3 cut(s)	938, 1319, 1671
BshVI	ATCGAT	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	3 cut(s)	55, 1212, 1458
BsiSI	CCGG	3 cut(s)	56, 394, 914
BslI	CCNNNNNNNGG	1 cut(s)	920
BsmAI	GTCTC	4 cut(s)	126, 1117, 1209, 1684
BsmBI	CGTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	1684
BsoBI	CYCGRG	3 cut(s)	55, 1212, 1458
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp13I	TCCGGA	2 cut(s)	393, 913
Bsp1407I	TGTACA	1 cut(s)	1114
BspACI	CCGC	3 cut(s)	11, 770, 1084
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	6 cut(s)	466, 775, 1141, 1270, 1297, 1530
BspDI	ATCGAT	1 cut(s)	675
BspEI	TCCGGA	2 cut(s)	393, 913
BspFNI	CGCG	1 cut(s)	1267
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	6 cut(s)	940, 1047, 1098, 1209, 1321, 1673
BspMAI	CTGCAG	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	8 cut(s)	107, 190, 857, 924, 932, 1049, 1202, 1215
BspT107I	GGYRCC	3 cut(s)	938, 1319, 1671
BspTNI	GGTCTC	1 cut(s)	1684
BsrGI	TGTACA	1 cut(s)	1114
BsrI	ACTGG	5 cut(s)	567, 687, 801, 1184, 1276
BssECI	CCNNGG	3 cut(s)	55, 197, 942
BssNAI	GTATAC	1 cut(s)	1584
BssNI	GRCGYC	1 cut(s)	1320
BssT1I	CCWWGG	2 cut(s)	197, 942
Bst1107I	GTATAC	1 cut(s)	1584
Bst2UI	CCWGG	4 cut(s)	66, 490, 665, 1676
Bst4CI	ACNGT	5 cut(s)	419, 746, 1109, 1375, 1399
BstACI	GRCGYC	1 cut(s)	1320
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	1114
BstC8I	GCNNGC	4 cut(s)	27, 271, 1295, 1481
BstFNI	CGCG	1 cut(s)	1267
BstH2I	RGCGCY	2 cut(s)	1014, 1323
BstHHI	GCGC	2 cut(s)	1013, 1322
BstMAI	GTCTC	4 cut(s)	126, 1117, 1209, 1684
BstMWI	GCNNNNNNNGC	7 cut(s)	299, 770, 776, 779, 836, 1319, 1715
BstNI	CCWGG	4 cut(s)	66, 490, 665, 1676
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	6 cut(s)	54, 55, 64, 488, 663, 1674
BstSFI	CTRYAG	4 cut(s)	336, 425, 959, 1065
BstUI	CGCG	1 cut(s)	1267
BstV1I	GCAGC	6 cut(s)	289, 754, 766, 776, 1705, 1744
BstV2I	GAAGAC	3 cut(s)	62, 420, 1545
BstX2I	RGATCY	3 cut(s)	924, 1054, 1207
BstYI	RGATCY	3 cut(s)	924, 1054, 1207
BstZ17I	GTATAC	1 cut(s)	1584
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	675
BtrI	CACGTC	1 cut(s)	120
BtsI	GCAGTG	2 cut(s)	318, 460
BtsIMutI	CAGTG	4 cut(s)	318, 424, 460, 1114
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	4 cut(s)	27, 271, 1295, 1481
CaiI	CAGNNNCTG	2 cut(s)	473, 779
CciI	TCATGA	1 cut(s)	1174
CfoI	GCGC	2 cut(s)	1013, 1322
Cfr13I	GGNCC	1 cut(s)	1045
Cfr9I	CCCGGG	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	675
CsiI	ACCWGGT	1 cut(s)	1674
Csp6I	GTAC	6 cut(s)	375, 747, 1115, 1269, 1275, 1431
CviAII	CATG	6 cut(s)	79, 266, 270, 920, 1175, 1612
CviQI	GTAC	6 cut(s)	375, 747, 1115, 1269, 1275, 1431
DinI	GGCGCC	1 cut(s)	1321
DraI	TTTAAA	2 cut(s)	547, 810
DriI	GACNNNNNGTC	1 cut(s)	585
Eam1105I	GACNNNNNGTC	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	2 cut(s)	197, 942
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	1684
Eco47I	GGWCC	1 cut(s)	1045
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	2 cut(s)	1622, 1651
Eco88I	CYCGRG	3 cut(s)	55, 1212, 1458
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	4 cut(s)	64, 488, 663, 1674
EcoT14I	CCWWGG	2 cut(s)	197, 942
EcoT22I	ATGCAT	2 cut(s)	271, 1704
EcoT38I	GRGCYC	1 cut(s)	393
EgeI	GGCGCC	1 cut(s)	1321
EheI	GGCGCC	1 cut(s)	1321
ErhI	CCWWGG	2 cut(s)	197, 942
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	6 cut(s)	82, 269, 273, 923, 1178, 1615
FalI	AAGNNNNNCTT	2 cut(s)	1377, 1409
FatI	CATG	6 cut(s)	78, 265, 269, 919, 1174, 1611
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	1315
FbaI	TGATCA	3 cut(s)	886, 967, 1177
FblI	GTMKAC	2 cut(s)	5, 1583
Fnu4HI	GCNGC	7 cut(s)	303, 765, 768, 771, 780, 1719, 1758
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	7 cut(s)	303, 765, 768, 771, 780, 1719, 1758
FspBI	CTAG	3 cut(s)	1101, 1634, 1712
GlaI	GCGC	2 cut(s)	1012, 1321
GluI	GCNGC	7 cut(s)	303, 765, 768, 771, 780, 1719, 1758
HaeII	RGCGCY	2 cut(s)	1014, 1323
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	3 cut(s)	56, 394, 914
HhaI	GCGC	2 cut(s)	1013, 1322
Hin1I	GRCGYC	1 cut(s)	1320
Hin1II	CATG	6 cut(s)	82, 269, 273, 923, 1178, 1615
Hin6I	GCGC	2 cut(s)	1011, 1320
HinP1I	GCGC	2 cut(s)	1011, 1320
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	3 cut(s)	131, 345, 401
HinfI	GANTC	7 cut(s)	470, 850, 982, 1169, 1262, 1331, 1453
HpaII	CCGG	3 cut(s)	56, 394, 914
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	5 cut(s)	6, 422, 661, 1045, 1584
Hpy188I	TCNGA	6 cut(s)	165, 475, 591, 636, 1143, 1663
Hpy8I	GTNNAC	5 cut(s)	6, 422, 661, 1045, 1584
HpyAV	CCTTC	2 cut(s)	1172, 1597
HpyCH4III	ACNGT	5 cut(s)	419, 746, 1109, 1375, 1399
HpyCH4IV	ACGT	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	7 cut(s)	299, 770, 776, 779, 836, 1319, 1715
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	1320
Hsp92II	CATG	6 cut(s)	82, 269, 273, 923, 1178, 1615
HspAI	GCGC	2 cut(s)	1011, 1320
KasI	GGCGCC	1 cut(s)	1319
Kpn2I	TCCGGA	2 cut(s)	393, 913
Ksp22I	TGATCA	3 cut(s)	886, 967, 1177
LmnI	GCTCC	2 cut(s)	396, 1195
Lsp1109I	GCAGC	6 cut(s)	289, 754, 766, 776, 1705, 1744
LweI	GCATC	3 cut(s)	1597, 1705, 1711
MabI	ACCWGGT	1 cut(s)	1674
MaeI	CTAG	3 cut(s)	1101, 1634, 1712
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	4 cut(s)	230, 601, 1103, 1614
MflI	RGATCY	3 cut(s)	924, 1054, 1207
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	9 cut(s)	45, 153, 279, 327, 610, 1344, 1366, 1563, 1620
Mly113I	GGCGCC	1 cut(s)	1320
MlyI	GAGTC	3 cut(s)	976, 1256, 1340
MmeI	TCCRAC	2 cut(s)	569, 890
Mph1103I	ATGCAT	2 cut(s)	271, 1704
MroI	TCCGGA	2 cut(s)	393, 913
MroXI	GAANNNNTTC	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	3 cut(s)	56, 394, 914
MspR9I	CCNGG	6 cut(s)	56, 57, 66, 490, 665, 1676
MvaI	CCWGG	4 cut(s)	66, 490, 665, 1676
MvnI	CGCG	1 cut(s)	1267
MwoI	GCNNNNNNNGC	7 cut(s)	299, 770, 776, 779, 836, 1319, 1715
NarI	GGCGCC	1 cut(s)	1320
NciI	CCSGG	2 cut(s)	56, 57
NdeI	CATATG	1 cut(s)	1315
NlaIII	CATG	6 cut(s)	82, 269, 273, 923, 1178, 1615
NlaIV	GGNNCC	6 cut(s)	940, 1047, 1098, 1209, 1321, 1673
NmeAIII	GCCGAG	2 cut(s)	299, 820
NmuCI	GTSAC	2 cut(s)	1103, 1614
NsiI	ATGCAT	2 cut(s)	271, 1704
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PaeR7I	CTCGAG	2 cut(s)	1212, 1458
PagI	TCATGA	1 cut(s)	1174
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	4 cut(s)	470, 850, 1169, 1453
PkrI	GCNGC	7 cut(s)	304, 766, 769, 772, 781, 1720, 1759
PleI	GAGTC	3 cut(s)	976, 1256, 1339
PluTI	GGCGCC	1 cut(s)	1323
PpsI	GAGTC	3 cut(s)	976, 1256, 1339
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	4 cut(s)	64, 488, 663, 1674
PspGI	CCWGG	4 cut(s)	64, 488, 663, 1674
PspN4I	GGNNCC	6 cut(s)	940, 1047, 1098, 1209, 1321, 1673
PspPI	GGNCC	1 cut(s)	1045
PstI	CTGCAG	1 cut(s)	429
PstNI	CAGNNNCTG	2 cut(s)	473, 779
PsuI	RGATCY	3 cut(s)	924, 1054, 1207
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	6 cut(s)	376, 748, 1116, 1270, 1276, 1432
RsaNI	GTAC	6 cut(s)	375, 747, 1115, 1269, 1275, 1431
SacI	GAGCTC	1 cut(s)	393
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	7 cut(s)	303, 765, 768, 771, 780, 1719, 1758
Sau96I	GGNCC	1 cut(s)	1045
SchI	GAGTC	3 cut(s)	976, 1256, 1340
ScrFI	CCNGG	6 cut(s)	56, 57, 66, 490, 665, 1676
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	1674
SfaNI	GCATC	3 cut(s)	1597, 1705, 1711
SfcI	CTRYAG	4 cut(s)	336, 425, 959, 1065
SfoI	GGCGCC	1 cut(s)	1321
Sfr274I	CTCGAG	2 cut(s)	1212, 1458
SinI	GGWCC	1 cut(s)	1045
SlaI	CTCGAG	2 cut(s)	1212, 1458
SmaI	CCCGGG	1 cut(s)	57
SmlI	CTYRAG	3 cut(s)	296, 1212, 1458
SmoI	CTYRAG	3 cut(s)	296, 1212, 1458
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	9 cut(s)	45, 153, 279, 327, 610, 1344, 1366, 1563, 1620
SsiI	CCGC	3 cut(s)	11, 770, 1084
SspDI	GGCGCC	1 cut(s)	1319
SspI	AATATT	4 cut(s)	208, 722, 825, 1423
SspMI	CTAG	3 cut(s)	1101, 1634, 1712
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	6 cut(s)	54, 55, 64, 488, 663, 1674
StyI	CCWWGG	2 cut(s)	197, 942
TaaI	ACNGT	5 cut(s)	419, 746, 1109, 1375, 1399
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	9 cut(s)	5, 554, 675, 727, 1038, 1165, 1213, 1459, 1627
TasI	AATT	9 cut(s)	45, 153, 279, 327, 610, 1344, 1366, 1563, 1620
TatI	WGTACW	3 cut(s)	374, 746, 1114
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	4 cut(s)	470, 850, 1169, 1453
TscAI	CASTG	4 cut(s)	325, 424, 460, 1114
TseFI	GTSAC	2 cut(s)	1103, 1614
TseI	GCWGC	6 cut(s)	302, 764, 767, 779, 1718, 1757
Tsp45I	GTSAC	2 cut(s)	1103, 1614
TspDTI	ATGAA	8 cut(s)	137, 254, 378, 413, 608, 834, 1545, 1749
TspMI	CCCGGG	1 cut(s)	55
TspRI	CASTG	4 cut(s)	325, 424, 460, 1114
VpaK11BI	GGWCC	1 cut(s)	1045
XapI	RAATTY	1 cut(s)	1620
XbaI	TCTAGA	1 cut(s)	1711
XceI	RCATGY	1 cut(s)	273
XhoI	CTCGAG	2 cut(s)	1212, 1458
XmaI	CCCGGG	1 cut(s)	55
XmiI	GTMKAC	2 cut(s)	5, 1583
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	3 cut(s)	1101, 1634, 1712
Zsp2I	ATGCAT	2 cut(s)	271, 1704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.