Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009747

Physical Location & Seq

Genomic Coordinates Forward (+)

22324260 .. 22329054

Gene Structure 4795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGGCAGAAGGCAAAGGGATTAGCTTGGAAGAAATCAAGAAAGAGAATGTTGACCTTGAGCGAATTCCAGTTCAGGAAGTGTTTGAGCAATTGCAATGCACAAAAGAGGGGCTGTCTAGTGATGAAGGGCAGAAGAGGCTCCAAGTCTTTGGCCCAAACAAGCTTGAGGAAAAGAAGGAAAACAAGGTTTTGAAGTTCTTGGGTTTTATGTGGAATCCCCTATCATGGGTTATGGAAATTGCAGCTATCATGGCCATTGCCTTGGCAAATGGAGGGGGAAGGCCACCGGACTGGCAAGACTTTGTGGGAATTACTTGTCTTTTGATTATCAATTCTACCATTAGTTTTATCGAAGAAAACAATGCAGGCAACGCTGCACAAGCTCTTATGGCTGGTCTTGCCCCAAAAACCAAGGTTCTAAGAGATGGAAGATGGTCTGAGTTAGAGGCTGCAATCTTAGTACCAGGAGATGTAGTCAGCATCAAGTTGGGAGACATTGTCCCAGCTGATGCACGTCTCTTGGAGGGAGATCCCCTCAAGATAGATCAGTCTGCCCTCACCGGTGAGTCGTTGCCTGTGACAAGGTACCCCGGGGATGAAGTGTTCTCGGGTTCCACTGTCAAGCAAGGAGAAATAGAGGCAGTAGTCATTGCCACAGGGGTTCACACCTTCTTTGGTAAGGCTGCTCACTTGGTTGACAGCACCAACCAAGTAGGCCACTTCCAAAAGGTTTTGACTGCCATCGGAAACTTTTGCATATGCTCTATTGCCATTGGAATGATAATAGAAATAGTGGTCATGTATCCAATACAACGTAGGAGATACAGGGATGGGATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCGATTGCTATGCCAACAGTGTTGTCAGTTACCATGGCTATTGGTTCTCACCGCCTATCCACGCAAGGCGCTATCACAAAGAGAATGACAGCCATTGAGGAGATGGCTGGAATGGATGTCCTATGTAGTGATAAGACTGGGACCCTGACTCTCAACAAGCTTACAGTAGACAAGACCATGGTCGAGGTGTTTGTAAAAGATGTCGACAAGGATGGTCTCATTTTGCTTGGCGCCAGGGCTTCGAGGGTTGAAAATCAGGATGCTATTGATACATGTATTGTTGGAATGTTGGGTGACCCCAAGGAGGCCAGGGAAAGTATAACTGAGGTCCATTTTTTGCCTTTCAATCCAGTCGAAAAGCGTACTGCCATAACATACATCGATACTGATGGCAATTGGCACCGAGTTAGCAAAGGTGCACCGGAGCAGATCATTGACCTCTGTGAGCTTAAAGACGATGCAAGGAAGAAAGCACATGCTATTATTGACAAGTTTGCAGATCGCGGTCTCCGTTCCCTTGCTGTTTGTAGACAGACTGTGCCAGAAAAAAACAAAGAGAGTGCAGGAACACCATGGCAGTTTGTAGGCCTCTTGCCTCTCTTTGATCCTCCTAGACATGACAGTGCAGAGACCATTCGACGTGCCCTTCATCTCGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGTAAGGAAACTGGCCGCAGACTCGGCATGGGAACCAACATGTATCCTTCTTCTTCCCTTCTTGGTGAACACAAGGACGAGTCTGTTGCTTCCCTCCCTATTGATGAGCTTATAGAAAAGGCTGATGGCTTTGCTGGTGTCTTCCCAGAGCATAAATATGAAATTGTGAAGCGGCTGCAAGAGAGGAAGCACATTTGTGGGATGACTGGAGATGGTGTGAATGATGCCCCAGCGCTAAAGAGGGCAGACATTGGTATTGCAGTCGATGATGCAACTGATGCTGCCCGGAGCGCCTCAGACATTGTCCTAACGGAGCCAGGATTGTCTGTGATTATCAGTGCTGTGTTGACAAGCAGAGCCATTTTCCAAAGGATGAAGAACTATACCATCTATGCTGTTTCCATCACAATTCGTGTTGTGCTTGGCTTTTTGCTCCTTGCTCTTATCTGGAAGTTTGACTTCTCACCTTTCATGGTGCTCATTATTGCCGTACTCAATGATGGAACAATCATGACTATTTCAAAGGATAGGGTGAAGCCATCTCCTCTTCCGGACTCATGGAAGTTAAAGGAGATCTTCGCCACTGGTGTCGTCCTTGGCACCTACATGGCTGTCATGACTGTTGTTTTCTTCTGGGCTGCTAATGATTCTAATTTTTTCTCGGACAAGTTTGGAGTAAGATCTATCAGAGGCAGTGATAGGGAGCTTACGGCAGCTGTCTACCTTCAAGTTAGTATTATCAGTCAGGCACTTATCTTTGTCACTCGATCCCGAAGCTGGTCTTTTGTAGAACGCCCCGGTGTCATGCTCATGATTGCCTTTCTCATAGCACAGCTACTTGCTACAATTCTCGCTGTTTATGCAAATTGGGGCTTTGCAAGAATCAAAGGCATGGGGTGGGGATGGGCAGGTGTTATTTGGCTCTACAGCATCGTCACCTACATACCTTTGGATATTCTCAAGTTCATGATTCGATATGCATTGAGTGGCAAGGCATGGGATAATGTACTTGAAAATAAGACTGCCTTCACAACAAAGAAGGATTATGGAAAGGGAGAGAGGGAGGCACAATGGGCAACAGCTCAACGTACCCTTCATGGGCTGCAGCCTCCAGAAACATCTGACATTTTCAATGACAAGAACAACTACCGAGAGTTGTCTGAGATCGCCGAACAGGCCAAGAGGCGAGCTGAAGTTGCTAGGTTGAGGGAGCTTCACACACTCAAGGGGCACGTGGAATCGGTCGTCAAACTCAAAGGACTTGACATTGACACCATTCAGCAACACTACACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

955

Amino Acids

105.27

Weight (kDa)

6.31

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	21 - 84	1.3e-15	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	134 - 232	4.7e-30	P-type ATPase actuator domain
Hydrolase	PF00702	328 - 605	6.3e-13	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	389 - 496	1.8e-06	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80660 AT1G80660 AT1G80660 AT1G80660
fragaria_vesca	FvH4_6g28890
malus_domestica	MD09G1223600.v1.1
prunus_persica	Prupe.3G095900_v2.0.a1 Prupe.3G095900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133471
rosa_laevigata	RLG00000019336
rosa_multiflora	Rmu_sc0004887.1_g000004 Rmu_sc0007236.1_g000003
rosa_rugosa	Rorug02G0311900 Rorug02G0311900 Rorug02G0311900 Rorug02G0312000
rosa_samantha	Rh2AG364500 Rh2BG370200 Rh2CG347800 Rh2DG387200
rosa_wichuraiana	Rw2G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2465
Acc36I	ACCTGC	1 cut(s)	2465
Acc65I	GGTACC	1 cut(s)	585
AccB1I	GGYRCC	4 cut(s)	585, 1100, 1269, 2165
AccI	GTMKAC	4 cut(s)	1038, 1074, 1399, 2286
AccII	CGCG	1 cut(s)	1374
AccIII	TCCGGA	1 cut(s)	2116
AciI	CCGC	4 cut(s)	922, 1374, 1582, 1738
AclWI	GGATC	3 cut(s)	524, 1469, 2328
AcoI	YGGCCR	2 cut(s)	252, 1579
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	2778
AcvI	CACGTG	1 cut(s)	2800
AcyI	GRCGYC	1 cut(s)	1101
AfaI	GTAC	6 cut(s)	462, 587, 1234, 2058, 2574, 2656
AfeI	AGCGCT	1 cut(s)	1800
AfiI	CCNNNNNNNGG	5 cut(s)	225, 226, 1174, 2343, 2664
AflIII	ACRYGT	2 cut(s)	1142, 1605
AgeI	ACCGGT	1 cut(s)	560
AgsI	TTSAA	7 cut(s)	193, 1121, 1216, 2088, 2294, 2579, 2698
AjiI	CACGTC	2 cut(s)	515, 1511
AjnI	CCWGG	4 cut(s)	463, 1103, 1178, 1882
AleI	CACNNNNGTG	1 cut(s)	1761
AloI	GAACNNNNNNTCC	2 cut(s)	587, 619
Alw21I	GWGCWC	2 cut(s)	1291, 2046
Alw26I	GTCTC	5 cut(s)	486, 521, 1091, 1382, 1493
Alw44I	GTGCAC	1 cut(s)	1287
AlwI	GGATC	3 cut(s)	524, 1469, 2328
Ama87I	CYCGRG	2 cut(s)	590, 607
Aor13HI	TCCGGA	1 cut(s)	2116
Aor51HI	AGCGCT	1 cut(s)	1800
AoxI	GGCC	8 cut(s)	151, 252, 281, 715, 1176, 1456, 1579, 2742
ApaLI	GTGCAC	1 cut(s)	1287
ApoI	RAATTY	1 cut(s)	63
AsiGI	ACCGGT	1 cut(s)	560
Asp718I	GGTACC	1 cut(s)	585
AspLEI	GCGC	4 cut(s)	941, 1103, 1801, 1859
AspS9I	GGNCC	3 cut(s)	152, 1011, 1198
AsuC2I	CCSGG	4 cut(s)	591, 592, 1852, 2364
AsuHPI	GGTGA	9 cut(s)	550, 575, 911, 1175, 1562, 1643, 2022, 2110, 2494
AvaI	CYCGRG	2 cut(s)	590, 607
AvaII	GGWCC	2 cut(s)	1011, 1198
BaeGI	GKGCMC	3 cut(s)	1291, 1516, 2799
BalI	TGGCCA	1 cut(s)	254
BanI	GGYRCC	4 cut(s)	585, 1100, 1269, 2165
BbrPI	CACGTG	1 cut(s)	2800
BbsI	GAAGAC	1 cut(s)	1699
Bbv12I	GWGCWC	2 cut(s)	1291, 2046
BceAI	ACGGC	2 cut(s)	2039, 2292
BcgI	CGANNNNNNTGC	4 cut(s)	862, 896, 1634, 1668
BciT130I	CCWGG	4 cut(s)	465, 1105, 1180, 1884
BciVI	GTATCC	2 cut(s)	813, 1620
BclI	TGATCA	1 cut(s)	1542
BcnI	CCSGG	4 cut(s)	591, 592, 1852, 2364
BcoDI	GTCTC	5 cut(s)	486, 521, 1091, 1382, 1493
BfaI	CTAG	3 cut(s)	117, 1482, 2766
BfmI	CTRYAG	2 cut(s)	2491, 2669
BfoI	RGCGCY	4 cut(s)	942, 1104, 1802, 1860
BfuAI	ACCTGC	1 cut(s)	2465
BfuI	GTATCC	2 cut(s)	813, 1620
BglI	GCCNNNNNGGC	1 cut(s)	2741
BglII	AGATCT	2 cut(s)	2139, 2246
Bme1390I	CCNGG	8 cut(s)	465, 591, 592, 1105, 1180, 1852, 1884, 2364
Bme18I	GGWCC	2 cut(s)	1011, 1198
BmeT110I	CYCGRG	2 cut(s)	590, 607
BmgBI	CACGTC	2 cut(s)	515, 1511
BmgT120I	GGNCC	3 cut(s)	152, 1011, 1198
BmrFI	CCNGG	8 cut(s)	465, 591, 592, 1105, 1180, 1852, 1884, 2364
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	8 cut(s)	489, 499, 1120, 1318, 1780, 1825, 1834, 2505
BmuI	ACTGGG	1 cut(s)	1017
BoxI	GACNNNNGTC	1 cut(s)	1049
BpiI	GAAGAC	1 cut(s)	1699
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
BpmI	CTGGAG	2 cut(s)	1794, 2661
BpuEI	CTTGAG	5 cut(s)	77, 185, 521, 2510, 2774
BpuMI	CCSGG	4 cut(s)	591, 592, 1852, 2364
Bsa29I	ATCGAT	1 cut(s)	1251
BsaAI	YACGTR	1 cut(s)	2800
BsaHI	GRCGYC	1 cut(s)	1101
BsaI	GGTCTC	3 cut(s)	1091, 1382, 1493
BsaWI	WCCGGW	4 cut(s)	286, 560, 1291, 2116
BsaXI	ACNNNNNCTCC	6 cut(s)	459, 483, 489, 513, 1767, 1797
Bsc4I	CCNNNNNNNGG	5 cut(s)	225, 226, 1174, 2343, 2664
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	8 cut(s)	68, 296, 1012, 1220, 1552, 1582, 1777, 2155
Bse3DI	GCAATG	3 cut(s)	101, 255, 648
BseAI	TCCGGA	1 cut(s)	2116
BseBI	CCWGG	4 cut(s)	465, 1105, 1180, 1884
BseCI	ATCGAT	1 cut(s)	1251
BseGI	GGATG	8 cut(s)	601, 835, 991, 1087, 1135, 1773, 1944, 2474
BseLI	CCNNNNNNNGG	5 cut(s)	225, 226, 1174, 2343, 2664
BseMI	GCAATG	3 cut(s)	101, 255, 648
BseMII	CTCAG	4 cut(s)	429, 1185, 1875, 2718
BseNI	ACTGG	8 cut(s)	68, 296, 1012, 1220, 1552, 1582, 1777, 2155
BseRI	GAGGAG	2 cut(s)	983, 2100
BseSI	GKGCMC	3 cut(s)	1291, 1516, 2799
BseYI	CCCAGC	2 cut(s)	502, 1795
BsgI	GTGCAG	3 cut(s)	360, 1452, 1515
Bsh1236I	CGCG	1 cut(s)	1374
Bsh1285I	CGRYCG	1 cut(s)	2811
BshFI	GGCC	8 cut(s)	153, 254, 283, 717, 1178, 1458, 1581, 2744
BshNI	GGYRCC	4 cut(s)	585, 1100, 1269, 2165
BshTI	ACCGGT	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	1251
BsiEI	CGRYCG	1 cut(s)	2811
BsiHKAI	GWGCWC	2 cut(s)	1291, 2046
BsiHKCI	CYCGRG	2 cut(s)	590, 607
BsiSI	CCGG	7 cut(s)	287, 561, 591, 1292, 1852, 2117, 2364
BslFI	GGGAC	2 cut(s)	485, 1024
BslI	CCNNNNNNNGG	5 cut(s)	225, 226, 1174, 2343, 2664
BsmAI	GTCTC	5 cut(s)	486, 521, 1091, 1382, 1493
BsmBI	CGTCTC	1 cut(s)	521
BsmFI	GGGAC	2 cut(s)	485, 1024
BsnI	GGCC	8 cut(s)	153, 254, 283, 717, 1178, 1458, 1581, 2744
Bso31I	GGTCTC	3 cut(s)	1091, 1382, 1493
BsoBI	CYCGRG	2 cut(s)	590, 607
Bsp1286I	GDGCHC	4 cut(s)	1291, 1516, 2046, 2799
Bsp13I	TCCGGA	1 cut(s)	2116
Bsp19I	CCATGG	3 cut(s)	903, 1047, 1442
BspACI	CCGC	4 cut(s)	922, 1374, 1582, 1738
BspANI	GGCC	8 cut(s)	153, 254, 283, 717, 1178, 1458, 1581, 2744
BspCNI	CTCAG	4 cut(s)	430, 1186, 1874, 2719
BspDI	ATCGAT	1 cut(s)	1251
BspEI	TCCGGA	1 cut(s)	2116
BspFNI	CGCG	1 cut(s)	1374
BspHI	TCATGA	4 cut(s)	2076, 2181, 2376, 2532
BspMAI	CTGCAG	1 cut(s)	2673
BspMI	ACCTGC	1 cut(s)	2465
BspPI	GGATC	3 cut(s)	524, 1469, 2328
BspT107I	GGYRCC	4 cut(s)	585, 1100, 1269, 2165
BspTNI	GGTCTC	3 cut(s)	1091, 1382, 1493
BsrDI	GCAATG	3 cut(s)	101, 255, 648
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	8 cut(s)	68, 296, 1012, 1220, 1552, 1582, 1777, 2155
BssAI	RCCGGY	1 cut(s)	560
BssNI	GRCGYC	1 cut(s)	1101
BssT1I	CCWWGG	7 cut(s)	261, 411, 903, 1047, 1170, 1442, 2161
Bst2UI	CCWGG	4 cut(s)	465, 1105, 1180, 1884
Bst4CI	ACNGT	7 cut(s)	619, 889, 1036, 1408, 1493, 2188, 2860
Bst6I	CTCTTC	2 cut(s)	128, 2118
BstACI	GRCGYC	1 cut(s)	1101
BstAPI	GCANNNNNTGC	1 cut(s)	1844
BstBAI	YACGTR	1 cut(s)	2800
BstC8I	GCNNGC	2 cut(s)	367, 2754
BstDEI	CTNAG	6 cut(s)	419, 438, 457, 1194, 1861, 2727
BstDSI	CCRYGG	3 cut(s)	903, 1047, 1442
BstEII	GGTNACC	2 cut(s)	1163, 1550
BstF5I	GGATG	8 cut(s)	601, 835, 991, 1087, 1135, 1773, 1944, 2474
BstFNI	CGCG	1 cut(s)	1374
BstH2I	RGCGCY	4 cut(s)	942, 1104, 1802, 1860
BstHHI	GCGC	4 cut(s)	941, 1103, 1801, 1859
BstMAI	GTCTC	5 cut(s)	486, 521, 1091, 1382, 1493
BstMCI	CGRYCG	1 cut(s)	2811
BstNI	CCWGG	4 cut(s)	465, 1105, 1180, 1884
BstNSI	RCATGY	3 cut(s)	1146, 1349, 1609
BstPAI	GACNNNNGTC	1 cut(s)	1049
BstPI	GGTNACC	2 cut(s)	1163, 1550
BstSCI	CCNGG	8 cut(s)	463, 589, 590, 1103, 1178, 1850, 1882, 2362
BstSFI	CTRYAG	2 cut(s)	2491, 2669
BstSLI	GKGCMC	3 cut(s)	1291, 1516, 2799
BstUI	CGCG	1 cut(s)	1374
BstV2I	GAAGAC	1 cut(s)	1699
BstX2I	RGATCY	3 cut(s)	529, 2139, 2246
BstXI	CCANNNNNNTGG	3 cut(s)	149, 262, 291
BstYI	RGATCY	3 cut(s)	529, 2139, 2246
Bsu15I	ATCGAT	1 cut(s)	1251
BsuI	GTATCC	2 cut(s)	813, 1620
BsuRI	GGCC	8 cut(s)	153, 254, 283, 717, 1178, 1458, 1581, 2744
BsuTUI	ATCGAT	1 cut(s)	1251
BtgI	CCRYGG	3 cut(s)	903, 1047, 1442
BtrI	CACGTC	2 cut(s)	515, 1511
BtsCI	GGATG	8 cut(s)	601, 835, 991, 1087, 1135, 1773, 1944, 2474
BtsI	GCAGTG	1 cut(s)	2266
BtsIMutI	CAGTG	8 cut(s)	615, 894, 1498, 1545, 1909, 2148, 2266, 2856
BveI	ACCTGC	1 cut(s)	2465
Cac8I	GCNNGC	2 cut(s)	367, 2754
CciI	TCATGA	4 cut(s)	2076, 2181, 2376, 2532
CfoI	GCGC	4 cut(s)	941, 1103, 1801, 1859
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	152, 1011, 1198
Cfr9I	CCCGGG	1 cut(s)	590
ClaI	ATCGAT	1 cut(s)	1251
Csp6I	GTAC	6 cut(s)	461, 586, 1233, 2057, 2573, 2655
CspAI	ACCGGT	1 cut(s)	560
CviQI	GTAC	6 cut(s)	461, 586, 1233, 2057, 2573, 2655
DdeI	CTNAG	6 cut(s)	419, 438, 457, 1194, 1861, 2727
DinI	GGCGCC	1 cut(s)	1102
EaeI	YGGCCR	2 cut(s)	252, 1579
Eam1104I	CTCTTC	2 cut(s)	128, 2118
EarI	CTCTTC	2 cut(s)	128, 2118
Eco130I	CCWWGG	7 cut(s)	261, 411, 903, 1047, 1170, 1442, 2161
Eco147I	AGGCCT	1 cut(s)	1458
Eco31I	GGTCTC	3 cut(s)	1091, 1382, 1493
Eco47I	GGWCC	2 cut(s)	1011, 1198
Eco47III	AGCGCT	1 cut(s)	1800
Eco57I	CTGAAG	1 cut(s)	2778
Eco72I	CACGTG	1 cut(s)	2800
Eco88I	CYCGRG	2 cut(s)	590, 607
Eco91I	GGTNACC	2 cut(s)	1163, 1550
EcoO109I	RGGNCCY	1 cut(s)	1011
EcoO65I	GGTNACC	2 cut(s)	1163, 1550
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	4 cut(s)	463, 1103, 1178, 1882
EcoT14I	CCWWGG	7 cut(s)	261, 411, 903, 1047, 1170, 1442, 2161
EcoT22I	ATGCAT	1 cut(s)	2548
EgeI	GGCGCC	1 cut(s)	1102
EheI	GGCGCC	1 cut(s)	1102
ErhI	CCWWGG	7 cut(s)	261, 411, 903, 1047, 1170, 1442, 2161
Esp3I	CGTCTC	1 cut(s)	521
FalI	AAGNNNNNCTT	8 cut(s)	2009, 2041, 2126, 2158, 2332, 2364, 2576, 2608
FaqI	GGGAC	2 cut(s)	485, 1024
FauNDI	CATATG	1 cut(s)	758
FbaI	TGATCA	1 cut(s)	1542
FblI	GTMKAC	4 cut(s)	1038, 1074, 1399, 2286
FokI	GGATG	8 cut(s)	608, 842, 998, 1094, 1142, 1780, 1951, 2481
FspBI	CTAG	3 cut(s)	117, 1482, 2766
GlaI	GCGC	4 cut(s)	940, 1102, 1800, 1858
GsaI	CCCAGC	2 cut(s)	506, 1799
GsuI	CTGGAG	2 cut(s)	1794, 2661
HaeII	RGCGCY	4 cut(s)	942, 1104, 1802, 1860
HaeIII	GGCC	8 cut(s)	153, 254, 283, 717, 1178, 1458, 1581, 2744
HapII	CCGG	7 cut(s)	287, 561, 591, 1292, 1852, 2117, 2364
HhaI	GCGC	4 cut(s)	941, 1103, 1801, 1859
Hin1I	GRCGYC	1 cut(s)	1101
Hin6I	GCGC	4 cut(s)	939, 1101, 1799, 1857
HinP1I	GCGC	4 cut(s)	939, 1101, 1799, 1857
HincII	GTYRAC	4 cut(s)	52, 697, 1075, 1914
HindII	GTYRAC	4 cut(s)	52, 697, 1075, 1914
HindIII	AAGCTT	2 cut(s)	161, 1028
HpaII	CCGG	7 cut(s)	287, 561, 591, 1292, 1852, 2117, 2364
HphI	GGTGA	9 cut(s)	550, 575, 911, 1175, 1562, 1643, 2022, 2110, 2494
Hpy188I	TCNGA	9 cut(s)	439, 746, 873, 1864, 2230, 2255, 2689, 2728, 2864
Hpy99I	CGWCG	1 cut(s)	1512
HpyCH4III	ACNGT	7 cut(s)	619, 889, 1036, 1408, 1493, 2188, 2860
HpyCH4IV	ACGT	5 cut(s)	514, 814, 1510, 2653, 2799
HpyF3I	CTNAG	6 cut(s)	419, 438, 457, 1194, 1861, 2727
HpySE526I	ACGT	5 cut(s)	514, 814, 1510, 2653, 2799
Hsp92I	GRCGYC	1 cut(s)	1101
HspAI	GCGC	4 cut(s)	939, 1101, 1799, 1857
KasI	GGCGCC	1 cut(s)	1100
KflI	GGGWCCC	1 cut(s)	1011
Kpn2I	TCCGGA	1 cut(s)	2116
KpnI	GGTACC	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	1542
LmnI	GCTCC	7 cut(s)	144, 1294, 1854, 1879, 2004, 2269, 2776
LweI	GCATC	8 cut(s)	489, 499, 1120, 1318, 1780, 1825, 1834, 2505
MaeI	CTAG	3 cut(s)	117, 1482, 2766
MaeII	ACGT	5 cut(s)	514, 814, 1510, 2653, 2799
MaeIII	GTNAC	6 cut(s)	577, 898, 1163, 1550, 2326, 2500
MfeI	CAATTG	2 cut(s)	89, 1264
MflI	RGATCY	3 cut(s)	529, 2139, 2246
MhlI	GDGCHC	4 cut(s)	1291, 1516, 2046, 2799
MlsI	TGGCCA	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	254
Mly113I	GGCGCC	1 cut(s)	1101
MlyI	GAGTC	5 cut(s)	575, 1012, 1581, 1655, 2114
MmeI	TCCRAC	1 cut(s)	1132
Mox20I	TGGCCA	1 cut(s)	254
Mph1103I	ATGCAT	1 cut(s)	2548
MroI	TCCGGA	1 cut(s)	2116
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	3 cut(s)	1320, 1536, 2132
MslI	CAYNNNNRTG	7 cut(s)	776, 1491, 1524, 1722, 1761, 2171, 2375
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	506, 2282
MspI	CCGG	7 cut(s)	287, 561, 591, 1292, 1852, 2117, 2364
MspR9I	CCNGG	8 cut(s)	465, 591, 592, 1105, 1180, 1852, 1884, 2364
MunI	CAATTG	2 cut(s)	89, 1264
MvaI	CCWGG	4 cut(s)	465, 1105, 1180, 1884
MvnI	CGCG	1 cut(s)	1374
NarI	GGCGCC	1 cut(s)	1101
NciI	CCSGG	4 cut(s)	591, 592, 1852, 2364
NcoI	CCATGG	3 cut(s)	903, 1047, 1442
NdeI	CATATG	1 cut(s)	758
NmeAIII	GCCGAG	1 cut(s)	1569
NmuCI	GTSAC	5 cut(s)	577, 1163, 1550, 2326, 2500
NsiI	ATGCAT	1 cut(s)	2548
NspI	RCATGY	3 cut(s)	1146, 1349, 1609
OliI	CACNNNNGTG	1 cut(s)	1761
PagI	TCATGA	4 cut(s)	2076, 2181, 2376, 2532
PaqCI	CACCTGC	1 cut(s)	2465
PceI	AGGCCT	1 cut(s)	1458
PciI	ACATGT	2 cut(s)	1142, 1605
PcsI	WCGNNNNNNNCGW	1 cut(s)	1378
PfeI	GAWTC	6 cut(s)	214, 868, 2213, 2448, 2536, 2804
PflFI	GACNNNGTC	2 cut(s)	497, 1868
PinAI	ACCGGT	1 cut(s)	560
PleI	GAGTC	5 cut(s)	574, 1012, 1581, 1654, 2114
PluTI	GGCGCC	1 cut(s)	1104
PmaCI	CACGTG	1 cut(s)	2800
PmlI	CACGTG	1 cut(s)	2800
PpsI	GAGTC	5 cut(s)	574, 1012, 1581, 1654, 2114
Ppu21I	YACGTR	1 cut(s)	2800
PpuMI	RGGWCCY	1 cut(s)	1011
PscI	ACATGT	2 cut(s)	1142, 1605
PshAI	GACNNNNGTC	1 cut(s)	1049
Psp5II	RGGWCCY	1 cut(s)	1011
Psp6I	CCWGG	4 cut(s)	463, 1103, 1178, 1882
PspCI	CACGTG	1 cut(s)	2800
PspEI	GGTNACC	2 cut(s)	1163, 1550
PspFI	CCCAGC	2 cut(s)	502, 1795
PspGI	CCWGG	4 cut(s)	463, 1103, 1178, 1882
PspPI	GGNCC	3 cut(s)	152, 1011, 1198
PspPPI	RGGWCCY	1 cut(s)	1011
PstI	CTGCAG	1 cut(s)	2673
PsuI	RGATCY	3 cut(s)	529, 2139, 2246
PsyI	GACNNNGTC	2 cut(s)	497, 1868
PvuII	CAGCTG	2 cut(s)	506, 2282
RsaI	GTAC	6 cut(s)	462, 587, 1234, 2058, 2574, 2656
RsaNI	GTAC	6 cut(s)	461, 586, 1233, 2057, 2573, 2655
RseI	CAYNNNNRTG	7 cut(s)	776, 1491, 1524, 1722, 1761, 2171, 2375
SalI	GTCGAC	1 cut(s)	1073
SaqAI	TTAA	3 cut(s)	1320, 1536, 2132
Sau96I	GGNCC	3 cut(s)	152, 1011, 1198
SchI	GAGTC	5 cut(s)	575, 1012, 1581, 1655, 2114
ScrFI	CCNGG	8 cut(s)	465, 591, 592, 1105, 1180, 1852, 1884, 2364
SduI	GDGCHC	4 cut(s)	1291, 1516, 2046, 2799
SfaNI	GCATC	8 cut(s)	489, 499, 1120, 1318, 1780, 1825, 1834, 2505
SfcI	CTRYAG	2 cut(s)	2491, 2669
SfoI	GGCGCC	1 cut(s)	1102
SgrAI	CRCCGGYG	1 cut(s)	560
SinI	GGWCC	2 cut(s)	1011, 1198
SmaI	CCCGGG	1 cut(s)	592
SmiMI	CAYNNNNRTG	7 cut(s)	776, 1491, 1524, 1722, 1761, 2171, 2375
SmlI	CTYRAG	5 cut(s)	56, 164, 536, 2525, 2789
SmoI	CTYRAG	5 cut(s)	56, 164, 536, 2525, 2789
SseBI	AGGCCT	1 cut(s)	1458
SsiI	CCGC	4 cut(s)	922, 1374, 1582, 1738
SspDI	GGCGCC	1 cut(s)	1100
SspMI	CTAG	3 cut(s)	117, 1482, 2766
StuI	AGGCCT	1 cut(s)	1458
StyD4I	CCNGG	8 cut(s)	463, 589, 590, 1103, 1178, 1850, 1882, 2362
StyI	CCWWGG	7 cut(s)	261, 411, 903, 1047, 1170, 1442, 2161
TaaI	ACNGT	7 cut(s)	619, 889, 1036, 1408, 1493, 2188, 2860
TaiI	ACGT	5 cut(s)	517, 817, 1513, 2656, 2802
TaqII	GACCGA	1 cut(s)	2797
TatI	WGTACW	1 cut(s)	2572
TauI	GCSGC	2 cut(s)	1584, 1741
TfiI	GAWTC	6 cut(s)	214, 868, 2213, 2448, 2536, 2804
Tru1I	TTAA	3 cut(s)	1320, 1536, 2132
Tru9I	TTAA	3 cut(s)	1320, 1536, 2132
TscAI	CASTG	8 cut(s)	622, 894, 1498, 1552, 1909, 2155, 2266, 2863
TseFI	GTSAC	5 cut(s)	577, 1163, 1550, 2326, 2500
Tsp45I	GTSAC	5 cut(s)	577, 1163, 1550, 2326, 2500
TspDTI	ATGAA	8 cut(s)	138, 612, 1508, 1740, 1955, 2026, 2521, 2651
TspGWI	ACGGA	2 cut(s)	1370, 1892
TspMI	CCCGGG	1 cut(s)	590
TspRI	CASTG	8 cut(s)	622, 894, 1498, 1552, 1909, 2155, 2266, 2863
Tth111I	GACNNNGTC	2 cut(s)	497, 1868
VneI	GTGCAC	1 cut(s)	1287
VpaK11BI	GGWCC	2 cut(s)	1011, 1198
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	3 cut(s)	1146, 1349, 1609
XcmI	CCANNNNNNNNNTGG	2 cut(s)	970, 1562
XmaI	CCCGGG	1 cut(s)	590
XmiI	GTMKAC	4 cut(s)	1038, 1074, 1399, 2286
XspI	CTAG	3 cut(s)	117, 1482, 2766
Zsp2I	ATGCAT	1 cut(s)	2548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.