Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009747

Physical Location & Seq

Genomic Coordinates Forward (+)

54057011 .. 54062048

Gene Structure 5038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG364500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGTGGAATCCCCTATCATGGGTTATGGAAATTGCAGCTATCATGGCCATTGCCTTAGCAAATGGAGGGGGAAGGCCACCGGACTGGCAAGACTTTGTGGGAATTACTTCACTGTTATTTATCAACTCCACCATCAGCTTTATCGAAGAAAACAATGCAGGCAATGCTGCAGAAGCTCTTATGGCTGGTCTTGCCCCAAAAACCAAGGTTCTAAGAGATGGAAAATGGTCTGAGCTAGAGGCTGCAATCTTGGTACCTGGAGATGTAGTCAGCATCAAGTTGGGAGACATTGTCCCAGCTGATGCGCGTCTCTTGGAGGGAGATCCCCTCAAGATAGATCAGTCTGCCCTCACCGGTGAGTCTTTGCCTGTGACAAGGTTCCCCGGGGATGAAGTGTTCTCGGGTTCCACTGTCAAGCAAGGAGAAATTGAGGCAGTAGTCATTGCCACAGGGGTTCACACCTTCTTTGGTAAGGCTGCTCACCTGGTTGACAGCACCAACAATGTAGGCCACTTCCAAAAGGTTTTGACAGCTATTGGAAACTTCTGCATATGCTCTATTGCCATAGGAATGGTAATAGAAATAGTGGTTATGTATCCAATACAGCGTAGGAAGTACAGGGATGGGATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCGATTGCTATGCCAACAGTGTTGTCAGTTACCATGGCTATTGGTTCTCACCGCCTGTCCACACAAGGCGCTATCACAAAGAGGATGACAGCCATTGAGGAGATGGCTGGCATGGATGTCCTATGCAGTGATAAGACTGGGACCCTGACTCTCAACAAGCTTACAGTAGACAAGACCATGGTCGAGGTGTTTGTAAAGGATGTTGACAAGGATGGTCTCATTTTGCTCGGCGCCAGGGCTTCGAGGGTTGAGAATCAGGATGCTATTGATACATGTATTGTTGGAATGTTGGGTGACCCCAAGGAGGCCAGGGAAGGTATAACTGAGGTCCACTTTTTGCCCTTTAATCCAGTTGAAAAGCGTACAGCCATAACATACATTGATCCTGATGGCAATTGGCACCGAGTTAGCAAAGGTGCACCGGAGCAGATCATTGACCTCTGCGAGCTAAAAGACGATGCAAGGAAGAAAGCACATGCAATTATTGACAAGTTTGCAGATCGCGGTCTCCGTTCCCTTGCTGTTGCTAGACAGACTGTGCCAGAAAAAAACAAAGAGAGTGCTGGAACACCATGGCAGTTTGTAGGCCTCTTGCCTCTCTTTGATCCTCCCAGGCATGACAGTGCAGAGACCATTCGGCGTGCCCTTCATCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGTAAGGAAACTGGCCGCAGACTCGGCATGGGAACCAACATGTATCCTTCTTCTTCCCTCCTTGGTGAACACAAGGACGAGTCTGTTGCTTCCCTCCCTATTGATGAGCTTATTGAAAAGGCTGATGGCTTTGCTGGTGTCTTCCCAGAGCACAAATATGAAATTGTGAAGCGGCTGCAAGAGAGGAAGCATATTTGTGGGATGACTGGAGATGGTGTGAATGATGCCCCAGCGCTAAAGAAGGCAGACATTGGTATTGCAGTCGATGATGCAACGGACGCTGCTCGGAGCGCCTCTGACATTGTCCTAACCGAACCAGGATTGTCTGTGATTATCAGTGCTGTGCTGACAAGCAGAGCCATTTTCCAGAGGATGAAGAACTACACCATCTATGCTGTTTCCATCACAATTCGTGTCGTCCTAGGATTTTTGCTCCTTGCTCTCATCTGGAAGTTTGACTTCTCACCTTTCATGGTTCTCATTATTGCCATTCTTAATGATGGAACAATCATGACTATTTCAAAGGATAGGGTGAAGCCATCTCCTCTTCCAGACTCATGGAAGCTAAAGGAGATCTTTGCCACTGGTATCGTCCTTGGCACCTACATGGCTGTCATGACTGTTGTTTTCTTCTGGGCTGCTAATGATTCTGACTTTTTCTCAGACAAGTTTGGTGTAAGATCTATCAGAGGCAGCGATAAGGAGCTTACGGCAGCTGTCTACCTTCAAGTTAGTATTATCAGTCAGGCACTTATCTTTGTCACTCGATCCCGAAGCTGGTCTTTTGTAGAACGCCCCGGTGCCATGCTCATGATTGCCTTTTGCATAGCACAGCTGCTTGCTACAATTCTCGCTGTTTATGCAAATTGGGGCTTTGCAAGAATCAAAGGTATGGGATGGGGATGGGCAGGTGTTATCTGGCTCTACAGCATCATCACCTACATACCATTGGATATTCTCAAGTTCATGATTCGATATGCATTGAGTGGCAAGGCCTGGGATACTGTACTTGAGAATAAGACTGCCTTCACAACAAAGAAGGATTACGGAAAGGGAGAGAGGGAGGCACAATGGGCAACAGCTCAACGAACCCTGCATGGGCTTCAGCCTCCTGAAACATCTGAACTCTTCAATGACAAGAACAACTACCGAGAGCTGTCTGAGATCGCCGAACAGGCCAAGAGGCGAGCTGAAGTTGCTAGGTTGAGGGAGCTTCATACACTCAAGGGGCACGTGGAATCGGTTGTCAAACTCAAAGGACTTGATATCGACACCATTCAGCAACACTACACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

885

Amino Acids

97.19

Weight (kDa)

6.3

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	65 - 163	4.6e-30	P-type ATPase actuator domain
Hydrolase	PF00702	259 - 536	4.7e-13	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	321 - 427	6.1e-06	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80660 AT1G80660 AT1G80660 AT1G80660
fragaria_vesca	FvH4_6g28890
malus_domestica	MD09G1223600.v1.1
prunus_persica	Prupe.3G095900_v2.0.a1 Prupe.3G095900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133471
rosa_laevigata	RLG00000019336
rosa_multiflora	Rmu_sc0004887.1_g000004 Rmu_sc0007236.1_g000003
rosa_rugosa	Rorug02G0311900 Rorug02G0311900 Rorug02G0311900 Rorug02G0312000
rosa_samantha	Rh2AG364500 Rh2BG370200 Rh2CG347800 Rh2DG387200
rosa_wichuraiana	Rw2G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2258
Acc36I	ACCTGC	1 cut(s)	2258
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	5 cut(s)	253, 893, 1062, 1958, 2159
AccI	GTMKAC	2 cut(s)	831, 2079
AccII	CGCG	2 cut(s)	307, 1167
AciI	CCGC	4 cut(s)	715, 1167, 1375, 1531
AclWI	GGATC	4 cut(s)	317, 1040, 1262, 2121
AcoI	YGGCCR	2 cut(s)	45, 1372
AcuI	CTGAAG	2 cut(s)	2447, 2571
AcvI	CACGTG	1 cut(s)	2593
AcyI	GRCGYC	1 cut(s)	894
AfaI	GTAC	4 cut(s)	255, 617, 1027, 2367
AfeI	AGCGCT	1 cut(s)	1593
AfiI	CCNNNNNNNGG	5 cut(s)	18, 19, 967, 2136, 2457
AflIII	ACRYGT	2 cut(s)	935, 1398
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	5 cut(s)	1019, 1475, 1881, 2087, 2491
AjnI	CCWGG	7 cut(s)	256, 483, 896, 971, 1274, 1675, 2354
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
Alw21I	GWGCWC	2 cut(s)	1084, 1512
Alw26I	GTCTC	5 cut(s)	279, 314, 884, 1175, 1286
Alw44I	GTGCAC	1 cut(s)	1080
AlwI	GGATC	4 cut(s)	317, 1040, 1262, 2121
Ama87I	CYCGRG	2 cut(s)	383, 400
Aor51HI	AGCGCT	1 cut(s)	1593
AoxI	GGCC	8 cut(s)	45, 74, 508, 969, 1249, 1372, 2352, 2535
ApaLI	GTGCAC	1 cut(s)	1080
AsiGI	ACCGGT	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	106
Asp718I	GGTACC	1 cut(s)	253
AspA2I	CCTAGG	1 cut(s)	1780
AspLEI	GCGC	5 cut(s)	307, 734, 896, 1594, 1652
AspS9I	GGNCC	2 cut(s)	804, 991
AsuC2I	CCSGG	3 cut(s)	384, 385, 2157
AvaI	CYCGRG	2 cut(s)	383, 400
AvaII	GGWCC	2 cut(s)	804, 991
AvrII	CCTAGG	1 cut(s)	1780
BaeGI	GKGCMC	3 cut(s)	1084, 1309, 2592
BalI	TGGCCA	1 cut(s)	47
BanI	GGYRCC	5 cut(s)	253, 893, 1062, 1958, 2159
BbrPI	CACGTG	1 cut(s)	2593
BbsI	GAAGAC	1 cut(s)	1492
Bbv12I	GWGCWC	2 cut(s)	1084, 1512
BceAI	ACGGC	1 cut(s)	2085
BcgI	CGANNNNNNTGC	4 cut(s)	655, 689, 1427, 1461
BciT130I	CCWGG	7 cut(s)	258, 485, 898, 973, 1276, 1677, 2356
BciVI	GTATCC	3 cut(s)	606, 1413, 2353
BclI	TGATCA	1 cut(s)	1335
BcnI	CCSGG	3 cut(s)	384, 385, 2157
BcoDI	GTCTC	5 cut(s)	279, 314, 884, 1175, 1286
BfaI	CTAG	4 cut(s)	236, 1191, 1781, 2559
BfmI	CTRYAG	2 cut(s)	168, 2284
BfoI	RGCGCY	4 cut(s)	735, 897, 1595, 1653
BfuAI	ACCTGC	1 cut(s)	2258
BfuI	GTATCC	3 cut(s)	606, 1413, 2353
BglI	GCCNNNNNGGC	1 cut(s)	2534
BglII	AGATCT	2 cut(s)	1932, 2039
BlnI	CCTAGG	1 cut(s)	1780
Bme18I	GGWCC	2 cut(s)	804, 991
BmeT110I	CYCGRG	2 cut(s)	383, 400
BmgT120I	GGNCC	2 cut(s)	804, 991
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	7 cut(s)	282, 292, 913, 1111, 1573, 1618, 2298
BmuI	ACTGGG	1 cut(s)	810
BoxI	GACNNNNGTC	1 cut(s)	842
BpiI	GAAGAC	1 cut(s)	1492
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpmI	CTGGAG	2 cut(s)	279, 1587
Bpu10I	CCTNAGC	1 cut(s)	55
BpuEI	CTTGAG	4 cut(s)	314, 2303, 2390, 2567
BpuMI	CCSGG	3 cut(s)	384, 385, 2157
BsaAI	YACGTR	1 cut(s)	2593
BsaHI	GRCGYC	1 cut(s)	894
BsaI	GGTCTC	3 cut(s)	884, 1175, 1286
BsaWI	WCCGGW	3 cut(s)	79, 353, 1084
BsaXI	ACNNNNNCTCC	6 cut(s)	252, 276, 282, 306, 1560, 1590
Bsc4I	CCNNNNNNNGG	5 cut(s)	18, 19, 967, 2136, 2457
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	7 cut(s)	89, 805, 1013, 1345, 1375, 1570, 1948
Bse3DI	GCAATG	3 cut(s)	48, 169, 441
BseBI	CCWGG	7 cut(s)	258, 485, 898, 973, 1276, 1677, 2356
BseLI	CCNNNNNNNGG	5 cut(s)	18, 19, 967, 2136, 2457
BseMI	GCAATG	3 cut(s)	48, 169, 441
BseMII	CTCAG	4 cut(s)	222, 978, 2034, 2511
BseNI	ACTGG	7 cut(s)	89, 805, 1013, 1345, 1375, 1570, 1948
BseRI	GAGGAG	2 cut(s)	776, 1893
BseSI	GKGCMC	3 cut(s)	1084, 1309, 2592
BseYI	CCCAGC	2 cut(s)	295, 1588
BsgI	GTGCAG	1 cut(s)	1308
Bsh1236I	CGCG	2 cut(s)	307, 1167
BshFI	GGCC	8 cut(s)	47, 76, 510, 971, 1251, 1374, 2354, 2537
BshNI	GGYRCC	5 cut(s)	253, 893, 1062, 1958, 2159
BshTI	ACCGGT	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	1084, 1512
BsiHKCI	CYCGRG	2 cut(s)	383, 400
BsiSI	CCGG	5 cut(s)	80, 354, 384, 1085, 2157
BslFI	GGGAC	2 cut(s)	278, 817
BslI	CCNNNNNNNGG	5 cut(s)	18, 19, 967, 2136, 2457
BsmAI	GTCTC	5 cut(s)	279, 314, 884, 1175, 1286
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	2 cut(s)	278, 817
BsnI	GGCC	8 cut(s)	47, 76, 510, 971, 1251, 1374, 2354, 2537
Bso31I	GGTCTC	3 cut(s)	884, 1175, 1286
BsoBI	CYCGRG	2 cut(s)	383, 400
Bsp1286I	GDGCHC	4 cut(s)	1084, 1309, 1512, 2592
Bsp19I	CCATGG	3 cut(s)	696, 840, 1235
BspACI	CCGC	4 cut(s)	715, 1167, 1375, 1531
BspANI	GGCC	8 cut(s)	47, 76, 510, 971, 1251, 1374, 2354, 2537
BspCNI	CTCAG	4 cut(s)	223, 979, 2033, 2512
BspFNI	CGCG	2 cut(s)	307, 1167
BspHI	TCATGA	4 cut(s)	1869, 1974, 2169, 2325
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	2258
BspPI	GGATC	4 cut(s)	317, 1040, 1262, 2121
BspT107I	GGYRCC	5 cut(s)	253, 893, 1062, 1958, 2159
BspTNI	GGTCTC	3 cut(s)	884, 1175, 1286
BsrDI	GCAATG	3 cut(s)	48, 169, 441
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	7 cut(s)	89, 805, 1013, 1345, 1375, 1570, 1948
BssAI	RCCGGY	1 cut(s)	353
BssNI	GRCGYC	1 cut(s)	894
BssT1I	CCWWGG	8 cut(s)	204, 696, 840, 963, 1235, 1420, 1780, 1954
Bst2UI	CCWGG	7 cut(s)	258, 485, 898, 973, 1276, 1677, 2356
Bst4CI	ACNGT	9 cut(s)	114, 412, 682, 829, 1201, 1286, 1981, 2365, 2653
Bst6I	CTCTTC	2 cut(s)	1911, 2492
BstACI	GRCGYC	1 cut(s)	894
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	2593
BstC8I	GCNNGC	6 cut(s)	160, 772, 1109, 1305, 2199, 2547
BstDEI	CTNAG	6 cut(s)	55, 212, 231, 987, 2020, 2520
BstDSI	CCRYGG	3 cut(s)	696, 840, 1235
BstEII	GGTNACC	2 cut(s)	956, 1343
BstFNI	CGCG	2 cut(s)	307, 1167
BstH2I	RGCGCY	4 cut(s)	735, 897, 1595, 1653
BstHHI	GCGC	5 cut(s)	307, 734, 896, 1594, 1652
BstMAI	GTCTC	5 cut(s)	279, 314, 884, 1175, 1286
BstNI	CCWGG	7 cut(s)	258, 485, 898, 973, 1276, 1677, 2356
BstNSI	RCATGY	3 cut(s)	939, 1142, 1402
BstPAI	GACNNNNGTC	1 cut(s)	842
BstPI	GGTNACC	2 cut(s)	956, 1343
BstSFI	CTRYAG	2 cut(s)	168, 2284
BstSLI	GKGCMC	3 cut(s)	1084, 1309, 2592
BstUI	CGCG	2 cut(s)	307, 1167
BstV2I	GAAGAC	1 cut(s)	1492
BstX2I	RGATCY	3 cut(s)	322, 1932, 2039
BstXI	CCANNNNNNTGG	3 cut(s)	84, 571, 1917
BstYI	RGATCY	3 cut(s)	322, 1932, 2039
BsuI	GTATCC	3 cut(s)	606, 1413, 2353
BsuRI	GGCC	8 cut(s)	47, 76, 510, 971, 1251, 1374, 2354, 2537
BtgI	CCRYGG	3 cut(s)	696, 840, 1235
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	9 cut(s)	110, 408, 687, 796, 1291, 1338, 1702, 1941, 2649
BveI	ACCTGC	1 cut(s)	2258
Cac8I	GCNNGC	6 cut(s)	160, 772, 1109, 1305, 2199, 2547
CciI	TCATGA	4 cut(s)	1869, 1974, 2169, 2325
CfoI	GCGC	5 cut(s)	307, 734, 896, 1594, 1652
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	804, 991
Cfr9I	CCCGGG	1 cut(s)	383
CseI	GACGC	2 cut(s)	296, 1646
CsiI	ACCWGGT	1 cut(s)	483
Csp6I	GTAC	4 cut(s)	254, 616, 1026, 2366
CspAI	ACCGGT	1 cut(s)	353
CviQI	GTAC	4 cut(s)	254, 616, 1026, 2366
DdeI	CTNAG	6 cut(s)	55, 212, 231, 987, 2020, 2520
DinI	GGCGCC	1 cut(s)	895
EaeI	YGGCCR	2 cut(s)	45, 1372
Eam1104I	CTCTTC	2 cut(s)	1911, 2492
EarI	CTCTTC	2 cut(s)	1911, 2492
Eco130I	CCWWGG	8 cut(s)	204, 696, 840, 963, 1235, 1420, 1780, 1954
Eco147I	AGGCCT	2 cut(s)	1251, 2354
Eco31I	GGTCTC	3 cut(s)	884, 1175, 1286
Eco32I	GATATC	1 cut(s)	2626
Eco47I	GGWCC	2 cut(s)	804, 991
Eco47III	AGCGCT	1 cut(s)	1593
Eco57I	CTGAAG	2 cut(s)	2447, 2571
Eco72I	CACGTG	1 cut(s)	2593
Eco88I	CYCGRG	2 cut(s)	383, 400
Eco91I	GGTNACC	2 cut(s)	956, 1343
EcoO109I	RGGNCCY	1 cut(s)	804
EcoO65I	GGTNACC	2 cut(s)	956, 1343
EcoRII	CCWGG	7 cut(s)	256, 483, 896, 971, 1274, 1675, 2354
EcoRV	GATATC	1 cut(s)	2626
EcoT14I	CCWWGG	8 cut(s)	204, 696, 840, 963, 1235, 1420, 1780, 1954
EcoT22I	ATGCAT	1 cut(s)	2341
EgeI	GGCGCC	1 cut(s)	895
EheI	GGCGCC	1 cut(s)	895
ErhI	CCWWGG	8 cut(s)	204, 696, 840, 963, 1235, 1420, 1780, 1954
Esp3I	CGTCTC	1 cut(s)	314
FalI	AAGNNNNNCTT	8 cut(s)	1802, 1834, 1919, 1951, 2125, 2157, 2369, 2401
FaqI	GGGAC	2 cut(s)	278, 817
FauNDI	CATATG	1 cut(s)	551
FbaI	TGATCA	1 cut(s)	1335
FblI	GTMKAC	2 cut(s)	831, 2079
FspBI	CTAG	4 cut(s)	236, 1191, 1781, 2559
GlaI	GCGC	5 cut(s)	306, 733, 895, 1593, 1651
GsaI	CCCAGC	2 cut(s)	299, 1592
GsuI	CTGGAG	2 cut(s)	279, 1587
HaeII	RGCGCY	4 cut(s)	735, 897, 1595, 1653
HaeIII	GGCC	8 cut(s)	47, 76, 510, 971, 1251, 1374, 2354, 2537
HapII	CCGG	5 cut(s)	80, 354, 384, 1085, 2157
HgaI	GACGC	2 cut(s)	296, 1646
HhaI	GCGC	5 cut(s)	307, 734, 896, 1594, 1652
Hin1I	GRCGYC	1 cut(s)	894
Hin6I	GCGC	5 cut(s)	305, 732, 894, 1592, 1650
HinP1I	GCGC	5 cut(s)	305, 732, 894, 1592, 1650
HincII	GTYRAC	2 cut(s)	490, 868
HindII	GTYRAC	2 cut(s)	490, 868
HindIII	AAGCTT	1 cut(s)	821
HpaII	CCGG	5 cut(s)	80, 354, 384, 1085, 2157
Hpy166II	GTNNAC	9 cut(s)	457, 490, 723, 832, 868, 994, 1082, 1427, 2080
Hpy8I	GTNNAC	9 cut(s)	457, 490, 723, 832, 868, 994, 1082, 1427, 2080
HpyAV	CCTTC	9 cut(s)	66, 472, 971, 1319, 1416, 1594, 2093, 2392, 2395
HpyCH4III	ACNGT	9 cut(s)	114, 412, 682, 829, 1201, 1286, 1981, 2365, 2653
HpyCH4IV	ACGT	1 cut(s)	2592
HpyF3I	CTNAG	6 cut(s)	55, 212, 231, 987, 2020, 2520
HpySE526I	ACGT	1 cut(s)	2592
Hsp92I	GRCGYC	1 cut(s)	894
HspAI	GCGC	5 cut(s)	305, 732, 894, 1592, 1650
KasI	GGCGCC	1 cut(s)	893
KflI	GGGWCCC	1 cut(s)	804
KpnI	GGTACC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	1335
LmnI	GCTCC	5 cut(s)	1087, 1647, 1797, 2062, 2569
LweI	GCATC	7 cut(s)	282, 292, 913, 1111, 1573, 1618, 2298
MabI	ACCWGGT	1 cut(s)	483
MaeI	CTAG	4 cut(s)	236, 1191, 1781, 2559
MaeII	ACGT	1 cut(s)	2592
MaeIII	GTNAC	5 cut(s)	370, 691, 956, 1343, 2119
MboII	GAAGA	9 cut(s)	158, 1141, 1401, 1404, 1492, 1747, 1898, 1981, 2479
MfeI	CAATTG	1 cut(s)	1057
MflI	RGATCY	3 cut(s)	322, 1932, 2039
MhlI	GDGCHC	4 cut(s)	1084, 1309, 1512, 2592
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	9 cut(s)	30, 102, 426, 1057, 1143, 1521, 1767, 2205, 2224
MluNI	TGGCCA	1 cut(s)	47
Mly113I	GGCGCC	1 cut(s)	894
MlyI	GAGTC	5 cut(s)	368, 805, 1374, 1448, 1907
MmeI	TCCRAC	1 cut(s)	925
Mox20I	TGGCCA	1 cut(s)	47
Mph1103I	ATGCAT	1 cut(s)	2341
MroXI	GAANNNNTTC	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	3 cut(s)	1008, 1329, 1854
MslI	CAYNNNNRTG	7 cut(s)	569, 1284, 1317, 1515, 1554, 1964, 2168
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	3 cut(s)	299, 2075, 2194
MspI	CCGG	5 cut(s)	80, 354, 384, 1085, 2157
MunI	CAATTG	1 cut(s)	1057
MvaI	CCWGG	7 cut(s)	258, 485, 898, 973, 1276, 1677, 2356
MvnI	CGCG	2 cut(s)	307, 1167
NarI	GGCGCC	1 cut(s)	894
NciI	CCSGG	3 cut(s)	384, 385, 2157
NcoI	CCATGG	3 cut(s)	696, 840, 1235
NdeI	CATATG	1 cut(s)	551
NmeAIII	GCCGAG	2 cut(s)	870, 1362
NmuCI	GTSAC	4 cut(s)	370, 956, 1343, 2119
NsiI	ATGCAT	1 cut(s)	2341
NspI	RCATGY	3 cut(s)	939, 1142, 1402
PagI	TCATGA	4 cut(s)	1869, 1974, 2169, 2325
PaqCI	CACCTGC	1 cut(s)	2258
PceI	AGGCCT	2 cut(s)	1251, 2354
PciI	ACATGT	2 cut(s)	935, 1398
PcsI	WCGNNNNNNNCGW	1 cut(s)	1171
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	7 cut(s)	7, 661, 916, 2006, 2241, 2329, 2597
PflFI	GACNNNGTC	2 cut(s)	290, 1661
PinAI	ACCGGT	1 cut(s)	353
PleI	GAGTC	5 cut(s)	367, 805, 1374, 1447, 1907
PluTI	GGCGCC	1 cut(s)	897
PmaCI	CACGTG	1 cut(s)	2593
PmlI	CACGTG	1 cut(s)	2593
PpsI	GAGTC	5 cut(s)	367, 805, 1374, 1447, 1907
Ppu21I	YACGTR	1 cut(s)	2593
PpuMI	RGGWCCY	1 cut(s)	804
PscI	ACATGT	2 cut(s)	935, 1398
PshAI	GACNNNNGTC	1 cut(s)	842
Psp5II	RGGWCCY	1 cut(s)	804
Psp6I	CCWGG	7 cut(s)	256, 483, 896, 971, 1274, 1675, 2354
PspCI	CACGTG	1 cut(s)	2593
PspEI	GGTNACC	2 cut(s)	956, 1343
PspFI	CCCAGC	2 cut(s)	295, 1588
PspGI	CCWGG	7 cut(s)	256, 483, 896, 971, 1274, 1675, 2354
PspPI	GGNCC	2 cut(s)	804, 991
PspPPI	RGGWCCY	1 cut(s)	804
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	3 cut(s)	322, 1932, 2039
PsyI	GACNNNGTC	2 cut(s)	290, 1661
PvuII	CAGCTG	3 cut(s)	299, 2075, 2194
RsaI	GTAC	4 cut(s)	255, 617, 1027, 2367
RsaNI	GTAC	4 cut(s)	254, 616, 1026, 2366
RseI	CAYNNNNRTG	7 cut(s)	569, 1284, 1317, 1515, 1554, 1964, 2168
SaqAI	TTAA	3 cut(s)	1008, 1329, 1854
Sau96I	GGNCC	2 cut(s)	804, 991
SchI	GAGTC	5 cut(s)	368, 805, 1374, 1448, 1907
SduI	GDGCHC	4 cut(s)	1084, 1309, 1512, 2592
SexAI	ACCWGGT	1 cut(s)	483
SfaNI	GCATC	7 cut(s)	282, 292, 913, 1111, 1573, 1618, 2298
SfcI	CTRYAG	2 cut(s)	168, 2284
SfoI	GGCGCC	1 cut(s)	895
SgrAI	CRCCGGYG	1 cut(s)	353
SinI	GGWCC	2 cut(s)	804, 991
SmaI	CCCGGG	1 cut(s)	385
SmiMI	CAYNNNNRTG	7 cut(s)	569, 1284, 1317, 1515, 1554, 1964, 2168
SmlI	CTYRAG	4 cut(s)	329, 2318, 2369, 2582
SmoI	CTYRAG	4 cut(s)	329, 2318, 2369, 2582
Sse9I	AATT	9 cut(s)	30, 102, 426, 1057, 1143, 1521, 1767, 2205, 2224
SseBI	AGGCCT	2 cut(s)	1251, 2354
SsiI	CCGC	4 cut(s)	715, 1167, 1375, 1531
SspDI	GGCGCC	1 cut(s)	893
SspMI	CTAG	4 cut(s)	236, 1191, 1781, 2559
StuI	AGGCCT	2 cut(s)	1251, 2354
StyI	CCWWGG	8 cut(s)	204, 696, 840, 963, 1235, 1420, 1780, 1954
TaaI	ACNGT	9 cut(s)	114, 412, 682, 829, 1201, 1286, 1981, 2365, 2653
TaiI	ACGT	1 cut(s)	2595
TaqI	TCGA	7 cut(s)	144, 846, 905, 1623, 2125, 2332, 2628
TasI	AATT	9 cut(s)	30, 102, 426, 1057, 1143, 1521, 1767, 2205, 2224
TatI	WGTACW	2 cut(s)	615, 2365
TauI	GCSGC	2 cut(s)	1377, 1534
TfiI	GAWTC	7 cut(s)	7, 661, 916, 2006, 2241, 2329, 2597
Tru1I	TTAA	3 cut(s)	1008, 1329, 1854
Tru9I	TTAA	3 cut(s)	1008, 1329, 1854
TscAI	CASTG	9 cut(s)	117, 415, 687, 796, 1291, 1345, 1702, 1948, 2656
TseFI	GTSAC	4 cut(s)	370, 956, 1343, 2119
Tsp45I	GTSAC	4 cut(s)	370, 956, 1343, 2119
TspDTI	ATGAA	7 cut(s)	405, 1301, 1533, 1748, 1819, 2314, 2564
TspGWI	ACGGA	3 cut(s)	1163, 1649, 2421
TspMI	CCCGGG	1 cut(s)	383
TspRI	CASTG	9 cut(s)	117, 415, 687, 796, 1291, 1345, 1702, 1948, 2656
Tth111I	GACNNNGTC	2 cut(s)	290, 1661
VneI	GTGCAC	1 cut(s)	1080
VpaK11BI	GGWCC	2 cut(s)	804, 991
XceI	RCATGY	3 cut(s)	939, 1142, 1402
XcmI	CCANNNNNNNNNTGG	2 cut(s)	763, 1355
XmaI	CCCGGG	1 cut(s)	383
XmaJI	CCTAGG	1 cut(s)	1780
XmiI	GTMKAC	2 cut(s)	831, 2079
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	4 cut(s)	236, 1191, 1781, 2559
Zsp2I	ATGCAT	1 cut(s)	2341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.