Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009747

Physical Location & Seq

Genomic Coordinates Reverse (-)

37571139 .. 37577206

Gene Structure 6068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCGAATTGGGAGCTGAAGAGTTGTTGCAAGCATGACCAGGTCATGTTCTTAGCGACTATTGGAGTCTATACCGTGGTGATCCTAGCGCTATGGAGGACAATACTACTCACGCCTTTTAAGCTCATTACAGTTTTCCTTCATGAAGCAAGCCATGCAATTGCTTGTATACTCACATGTGGCAAGGTTGAGGGTATCCAGGTTCACGCAAATGAGGGTGGGGCGACACAAACACGTGGTGGTATATATTGGCTGATTTTGCCTGCAGGATATCTGGGTTCATCATTTTGGGGAATGGCATTGATACTTGCGTCAACAAATCTCCTTACTGCTAGAATTGCTGCTGGTTGTTTAGGCGTTGCCCTGCTTGTTGTGCTTTTTCTGGCAAAAAATTGGACACTTCGAGGACTTTGTATTGGATTTATCATATTCCTTGCTGTAGTATGGGTTCTGCAAGAACTCACGGGAGTCCGTATTCTTCGCTATGTCATTCTCTTTATTGGTGTGATGAACAGTTTGTTTTCAGTTTACGATATTTATGATGATTTAATATCTAGAAGAGTCCACTCTAGTGATGCGGAAAAGTTTGCGGAAGTTTGCCCCTGTCCCTGCACTGGGGTTGGATGGGGAGTCATATGGGGATTGATATCTTTCATATTTCTGTGTGGAGCTGTGTACCTTGGACTCGTCATCTTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

233

Amino Acids

25.53

Weight (kDa)

8.04

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50B	PF13398	23 - 223	1.2e-56	Peptidase M50B-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80660 AT1G80660 AT1G80660 AT1G80660
fragaria_vesca	FvH4_6g28890
malus_domestica	MD09G1223600.v1.1
prunus_persica	Prupe.3G095900_v2.0.a1 Prupe.3G095900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0133471
rosa_laevigata	RLG00000019336
rosa_multiflora	Rmu_sc0004887.1_g000004 Rmu_sc0007236.1_g000003
rosa_rugosa	Rorug02G0311900 Rorug02G0311900 Rorug02G0311900 Rorug02G0312000
rosa_samantha	Rh2AG364500 Rh2BG370200 Rh2CG347800 Rh2DG387200
rosa_wichuraiana	Rw2G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	169
AciI	CCGC	2 cut(s)	578, 590
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	236
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	677
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	614, 615
AflIII	ACRYGT	2 cut(s)	176, 233
AjnI	CCWGG	2 cut(s)	39, 198
AleI	CACNNNNGTG	1 cut(s)	570
AluBI	AGCT	3 cut(s)	16, 124, 671
AluI	AGCT	3 cut(s)	16, 124, 671
AlwI	GGATC	1 cut(s)	76
Aor51HI	AGCGCT	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	296, 329
BbrPI	CACGTG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	618
BciT130I	CCWGG	2 cut(s)	41, 200
BciVI	GTATCC	1 cut(s)	206
BfaI	CTAG	4 cut(s)	86, 333, 555, 570
BfmI	CTRYAG	2 cut(s)	264, 438
BfoI	RGCGCY	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	41, 200
BmrFI	CCNGG	2 cut(s)	41, 200
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	624
BsaAI	YACGTR	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	646
BsaJI	CCNNGG	2 cut(s)	75, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 615
Bse1I	ACTGG	1 cut(s)	619
Bse8I	GATNNNNATC	1 cut(s)	646
BseBI	CCWGG	2 cut(s)	41, 200
BseDI	CCNNGG	2 cut(s)	75, 679
BseGI	GGATG	1 cut(s)	629
BseJI	GATNNNNATC	1 cut(s)	646
BseLI	CCNNNNNNNGG	2 cut(s)	614, 615
BseNI	ACTGG	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	2 cut(s)	614, 615
BsmFI	GGGAC	1 cut(s)	591
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	578, 590
BspHI	TCATGA	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	75, 679
BssMI	GATC	1 cut(s)	81
BssNAI	GTATAC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	679
Bst1107I	GTATAC	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	41, 200
Bst4CI	ACNGT	3 cut(s)	76, 133, 515
Bst6I	CTCTTC	2 cut(s)	14, 553
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	32, 151, 264
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	629
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 155, 259, 338, 373
BstNI	CCWGG	2 cut(s)	41, 200
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	39, 198
BstSFI	CTRYAG	2 cut(s)	264, 438
BstV1I	GCAGC	1 cut(s)	328
BstZ17I	GTATAC	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	3 cut(s)	32, 151, 264
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	91
CseI	GACGC	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	5 cut(s)	35, 46, 143, 155, 177
CviJI	RGCY	5 cut(s)	16, 124, 153, 253, 671
CviKI_1	RGCY	5 cut(s)	16, 124, 153, 253, 671
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DraIII	CACNNNGTG	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	14, 553
EarI	CTCTTC	2 cut(s)	14, 553
Eco130I	CCWWGG	1 cut(s)	679
Eco32I	GATATC	2 cut(s)	272, 648
Eco47III	AGCGCT	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	39, 198
EcoRV	GATATC	2 cut(s)	272, 648
EcoT14I	CCWWGG	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	5 cut(s)	38, 49, 146, 158, 180
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	34, 45, 142, 154, 176
FauNDI	CATATG	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	1 cut(s)	636
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	4 cut(s)	86, 333, 555, 570
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	92
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	5 cut(s)	38, 49, 146, 158, 180
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	5 cut(s)	66, 468, 561, 630, 684
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	6 cut(s)	170, 205, 315, 529, 565, 676
Hpy188III	TCNNGA	3 cut(s)	143, 555, 699
Hpy8I	GTNNAC	6 cut(s)	170, 205, 315, 529, 565, 676
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	3 cut(s)	76, 133, 515
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	30, 158, 266, 454, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 155, 259, 338, 373
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	5 cut(s)	38, 49, 146, 158, 180
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	13, 668
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	565
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	4 cut(s)	86, 333, 555, 570
MaeII	ACGT	1 cut(s)	235
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	3 cut(s)	31, 470, 570
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	4 cut(s)	7, 159, 336, 391
MlyI	GAGTC	5 cut(s)	75, 477, 570, 639, 678
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	4 cut(s)	90, 184, 208, 398
MseI	TTAA	2 cut(s)	120, 548
MslI	CAYNNNNRTG	2 cut(s)	210, 570
MspR9I	CCNGG	2 cut(s)	41, 200
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	41, 200
MwoI	GCNNNNNNNGC	5 cut(s)	121, 155, 259, 338, 373
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	5 cut(s)	38, 49, 146, 158, 180
NspI	RCATGY	1 cut(s)	180
OliI	CACNNNNGTG	1 cut(s)	570
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	5 cut(s)	74, 476, 569, 638, 678
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	5 cut(s)	74, 476, 569, 638, 678
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	39, 198
PspCI	CACGTG	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	39, 198
PsrI	GAACNNNNNNTAC	2 cut(s)	432, 464
PstI	CTGCAG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	2 cut(s)	210, 570
SaqAI	TTAA	2 cut(s)	120, 548
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	1 cut(s)	81
SbfI	CCTGCAGG	1 cut(s)	268
SchI	GAGTC	5 cut(s)	75, 477, 570, 639, 678
ScrFI	CCNGG	2 cut(s)	41, 200
SdaI	CCTGCAGG	1 cut(s)	268
SetI	ASST	8 cut(s)	18, 45, 126, 189, 204, 238, 673, 681
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	2 cut(s)	264, 438
SmiMI	CAYNNNNRTG	2 cut(s)	210, 570
Sse8387I	CCTGCAGG	1 cut(s)	268
Sse9I	AATT	4 cut(s)	7, 159, 336, 391
SsiI	CCGC	2 cut(s)	578, 590
SspMI	CTAG	4 cut(s)	86, 333, 555, 570
StyD4I	CCNGG	2 cut(s)	39, 198
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	3 cut(s)	76, 133, 515
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	403
TasI	AATT	4 cut(s)	7, 159, 336, 391
Tru1I	TTAA	2 cut(s)	120, 548
Tru9I	TTAA	2 cut(s)	120, 548
TscAI	CASTG	1 cut(s)	619
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	5 cut(s)	131, 159, 270, 524, 643
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	619
Tth111I	GACNNNGTC	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	554
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	169
XspI	CTAG	4 cut(s)	86, 333, 555, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.