Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017696

Physical Location & Seq

Genomic Coordinates Forward (+)

23024141 .. 23026679

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29801.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGATAGGATAACGCAGCTCCCAGATGACCCCTTGCTGAAAATAGAATTTGCATCAACTTTTGATCAAGGTGAAGCAAGCCTTGACAACTTCACTAATGTGATGCTGTCTCGCTCAGGCCTATCCTGTGACCTGAAGAAGTTGGAAATTCATTGCACTAATTACGAAAACCCCCACTCGGTTACACATATGTTCCAAGTTGCAGTGCAAGGGCGATCTGTGAAGCACTTGATTCTGAATTTTGAGTATGAAGAATTGGAGGGATACTTCAACCTCCCCCAGTCAATACAAGGAAGCACCCTTTGTGTCAATGATCTGTGCGAAGTGCTCGATTGGGAAGGCACAAGTTTCGTTGTGGCTAGAGGAAAGATTTCAGCAGTTGACCCAACTACAAAAGTGCATGGCTACTTGGACCTGACTGTTATAGAGTTGTTGTTGAGGACGCTGTCGTTCCTAGAGCTGAATTCTATCGTCCCTAACCTGATTTTTCTACCATGGAAGATGCAGTTAGAAGGCTTATACTCAAGCTGCCCAGTCTTGGAGCAACTCTCCCTTGTTAGAGAGGTCAATGAAAACCCTCATGAAGGCAATAGGTGCAGGTTTAAAGTTGTCTTTGGATCCCTTAAGCGATTCGGTATAAGCCATGGAAACAAGGGTGCTAATGGGGATTATCAGTTGTATGCCTTTGTGATAGACACACCTAAACTACAGGTGTTATCCATAGATGAAGATCTTTTGGCTTCCTACACTGTGAGGAACTTGGAATCCCTCACTGAAGCCGACATCCAAGCAGGTGGCCGAATATTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

272

Amino Acids

30.46

Weight (kDa)

4.94

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29801
prunus_persica	Prupe.1G273800_v2.0.a1 Prupe.1G285400_v2.0.a1
rosa_laevigata	RLG00000026075
rosa_rugosa	Rorug02G0357900 Rorug02G0358000
rosa_samantha	Rh1BG427400 Rh1DG460300 Rh1DG460400 Rh2AG407300 Rh2BG417800 Rh2CG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	814
AarI	CACCTGC	1 cut(s)	785
Acc36I	ACCTGC	2 cut(s)	591, 785
AclWI	GGATC	2 cut(s)	615, 628
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	4 cut(s)	50, 150, 241, 466
AcuI	CTGAAG	2 cut(s)	158, 798
AfiI	CCNNNNNNNGG	3 cut(s)	181, 541, 587
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	1 cut(s)	274
AleI	CACNNNNGTG	1 cut(s)	101
AloI	GAACNNNNNNTCC	2 cut(s)	752, 784
AluBI	AGCT	3 cut(s)	22, 463, 531
AluI	AGCT	3 cut(s)	22, 463, 531
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	615, 628
AoxI	GGCC	2 cut(s)	121, 799
ApeKI	GCWGC	2 cut(s)	19, 531
ApoI	RAATTY	4 cut(s)	50, 150, 241, 466
Asp700I	GAANNNNTTC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	31, 518
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciVI	GTATCC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	363, 458
BfmI	CTRYAG	1 cut(s)	710
BfrI	CTTAAG	1 cut(s)	626
BfuAI	ACCTGC	2 cut(s)	591, 785
BfuI	GTATCC	1 cut(s)	260
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	2 cut(s)	20, 532
BlsI	GCNGC	2 cut(s)	21, 533
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	622
BmrI	ACTGGG	2 cut(s)	277, 530
BmsI	GCATC	3 cut(s)	65, 96, 495
BmuI	ACTGGG	2 cut(s)	277, 530
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
Bpu10I	CCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	497, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 541, 587
Bse1I	ACTGG	2 cut(s)	283, 536
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	497, 646
BseGI	GGATG	1 cut(s)	786
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	3 cut(s)	181, 541, 587
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	283, 536
BseXI	GCAGC	2 cut(s)	31, 518
BsgI	GTGCAG	1 cut(s)	619
BshFI	GGCC	2 cut(s)	123, 801
BsiHKAI	GWGCWC	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	181, 541, 587
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	123, 801
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	67, 218, 316, 620, 733
Bsp19I	CCATGG	2 cut(s)	497, 646
BspANI	GGCC	2 cut(s)	123, 801
BspCNI	CTCAG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	622
BspMI	ACCTGC	2 cut(s)	591, 785
BspPI	GGATC	2 cut(s)	615, 628
BspTI	CTTAAG	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	283, 536
BssECI	CCNNGG	2 cut(s)	497, 646
BssMI	GATC	5 cut(s)	67, 218, 316, 620, 733
BssT1I	CCWWGG	2 cut(s)	497, 646
Bst4CI	ACNGT	2 cut(s)	424, 754
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	2 cut(s)	497, 646
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	786
BstKTI	GATC	5 cut(s)	70, 221, 319, 623, 736
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	67, 218, 316, 620, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	710
BstV1I	GCAGC	2 cut(s)	31, 518
BstX2I	RGATCY	2 cut(s)	620, 733
BstXI	CCANNNNNNTGG	1 cut(s)	797
BstYI	RGATCY	2 cut(s)	620, 733
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	123, 801
BtgI	CCRYGG	2 cut(s)	497, 646
BtsCI	GGATG	1 cut(s)	786
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 750, 774
BveI	ACCTGC	2 cut(s)	591, 785
Cac8I	GCNNGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	454
CviAII	CATG	4 cut(s)	404, 498, 584, 647
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	5 cut(s)	69, 220, 318, 622, 735
DpnII	GATC	5 cut(s)	67, 218, 316, 620, 733
DraI	TTTAAA	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	799
Eco130I	CCWWGG	2 cut(s)	497, 646
Eco147I	AGGCCT	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	158, 798
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRI	GAATTC	1 cut(s)	466
EcoT14I	CCWWGG	2 cut(s)	497, 646
ErhI	CCWWGG	2 cut(s)	497, 646
FaeI	CATG	4 cut(s)	407, 501, 587, 650
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	403, 497, 583, 646
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	20, 532
FokI	GGATG	1 cut(s)	773
Fsp4HI	GCNGC	2 cut(s)	20, 532
FspBI	CTAG	2 cut(s)	363, 458
GluI	GCNGC	2 cut(s)	20, 532
HaeIII	GGCC	2 cut(s)	123, 801
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	4 cut(s)	407, 501, 587, 650
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	235, 633, 767
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	3 cut(s)	335, 509, 581
HpyCH4III	ACNGT	2 cut(s)	424, 754
HpyCH4V	TGCA	7 cut(s)	56, 159, 206, 211, 403, 508, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	4 cut(s)	407, 501, 587, 650
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	67, 218, 316, 620, 733
LmnI	GCTCC	2 cut(s)	27, 544
Lsp1109I	GCAGC	2 cut(s)	31, 518
LweI	GCATC	3 cut(s)	65, 96, 495
MaeI	CTAG	2 cut(s)	363, 458
MaeIII	GTNAC	2 cut(s)	131, 184
MalI	GATC	5 cut(s)	69, 220, 318, 622, 735
MboI	GATC	5 cut(s)	67, 218, 316, 620, 733
MboII	GAAGA	4 cut(s)	151, 266, 514, 743
MflI	RGATCY	2 cut(s)	620, 733
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	6 cut(s)	50, 150, 163, 241, 257, 466
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	256, 287, 359, 435, 559, 591, 750, 782
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	2 cut(s)	606, 627
MslI	CAYNNNNRTG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	597
NcoI	CCATGG	2 cut(s)	497, 646
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	5 cut(s)	67, 218, 316, 620, 733
NlaIII	CATG	4 cut(s)	407, 501, 587, 650
NlaIV	GGNNCC	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	131
OliI	CACNNNNGTG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	583
PaqCI	CACCTGC	1 cut(s)	785
PceI	AGGCCT	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	235, 633, 767
PflFI	GACNNNGTC	1 cut(s)	448
PkrI	GCNGC	2 cut(s)	21, 533
PsiI	TTATAA	1 cut(s)	814
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	620, 733
PsyI	GACNNNGTC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	606, 627
SatI	GCNGC	2 cut(s)	20, 532
Sau3AI	GATC	5 cut(s)	67, 218, 316, 620, 733
Sau96I	GGNCC	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	3 cut(s)	65, 96, 495
SfcI	CTRYAG	1 cut(s)	710
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	526, 626
SmoI	CTYRAG	2 cut(s)	526, 626
Sse9I	AATT	6 cut(s)	50, 150, 163, 241, 257, 466
SseBI	AGGCCT	1 cut(s)	123
SspI	AATATT	1 cut(s)	807
SspMI	CTAG	2 cut(s)	363, 458
StuI	AGGCCT	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	497, 646
TaaI	ACNGT	2 cut(s)	424, 754
TaqI	TCGA	1 cut(s)	333
TasI	AATT	6 cut(s)	50, 150, 163, 241, 257, 466
TfiI	GAWTC	3 cut(s)	235, 633, 767
Tru1I	TTAA	2 cut(s)	606, 627
Tru9I	TTAA	2 cut(s)	606, 627
TscAI	CASTG	3 cut(s)	213, 757, 781
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	2 cut(s)	19, 531
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	5 cut(s)	143, 267, 588, 600, 744
TspRI	CASTG	3 cut(s)	213, 757, 781
Tth111I	GACNNNGTC	1 cut(s)	448
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	4 cut(s)	50, 150, 241, 466
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	2 cut(s)	363, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.