RLG00000026075

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017696
Physical Location & Seq
Forward (+)
363119 .. 364678
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026075

Sequence Viewer

Length: 1230 bp
ATGGCTGACAAAGCTAGGATCAGCGAGCTACCTGACGATATCCGCTTACAGATCCTATCCTTGCTACCAGGCAAAGATGCGGTAGCGACAGCAATTCTATCACATAAATGGAAAGACCTATATACACCGCAAGGTGAAGTGAGGTTTGAATTCAACTCAACGCATGAGGACAGAGAAACTCTATACAACTTTATCAAGGAGGAGTTGCTTATTACAGGTGTACCACCCCTACTTAGGTTTGTCTTACAATGCAACTTGTACAAGGAGCGTCGCCCAATTGAGCATATGCTCCATGCAGCAACTAAAAAGCGCCTTGTGGTGGATTTGGAATACTTAAGATTGTGTGGGGTGAGCGTGAGAGTTCCAGATGGCACACCTGTTCTCCAATCTTTGAAGAGGTTACAAGTCGATATATCATTAAAGAGTGACATTTCCCTCCAGTACCTCTATGCCAAATGTCCTGTTCTTCAGGAGCTCACATTGGAAGGAAATATCGATGACCTACCTCGTCATCATGCACCAGACCCCATATACTCATTCTACATATATGCACCAAAGCTGGAGAATCTCTTGATAGAAGAGAACATGTTAGCTTGCTACAGAGTCCACAACTTGGAAACTACAGTTGAAGCCAGGCTTCAGATTGGATGGCGAGATGTGGGCTATGAATTCACAGATCCTAAGTCTCTAAATGATGTTTTCAGCCTTTTGAGAGGCCTAACCAATGTGCAGTCTCTGACCCTTTACGACCAAACTACAGCGGCTGCTGGATTTATTCTTAAGGAGATGTATCAAGCTGAATTCATTGCAGCAGAGAGGGCAGGACATGAAATGTCTGATGCTGACAATAAGGACTGGAGCCTGTATAGAAACGCACTACCTATCTTTTGTCTATTCACTGAGTTAAATTTACATGTATCAAATCATTTCGGATGTAGAACTGTCATGTATCTACTTGGCCAGACAGCTGCTTTGAAGCTCCTAGTCATAAAGATGGTAGAGAGAGATAATGTAGAGAGGGATCAAAGGTTTTCATGGACGCCACCACCAGTCACACCTGAATGCGTGAGAAAAAACAGCCTTAAAAAAGTTCAGCTGAAAGGGTTTCTGGGGCATGAAGAGGAATGGTCACCGATGATTAACTATTTCCAGAACATTGCAAGGTCAACTGAATCATCACAGCCAGAGGATGCATTCTTCTTATGGAGTAGTAATCGTGTTCGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

410

Amino Acids

47.2

Weight (kDa)

5.93

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 40 6.6e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 613
AciI CCGC 4 cut(s) 43, 80, 128, 761
AclWI GGATC 4 cut(s) 26, 46, 671, 1029
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 4 cut(s) 149, 668, 800, 907
AcuI CTGAAG 2 cut(s) 452, 623
AcyI GRCGYC 1 cut(s) 1040
AfaI GTAC 3 cut(s) 222, 260, 443
AfiI CCNNNNNNNGG 3 cut(s) 234, 319, 613
AflII CTTAAG 2 cut(s) 334, 779
AflIII ACRYGT 2 cut(s) 585, 913
AgsI TTSAA 5 cut(s) 149, 154, 394, 629, 976
AjnI CCWGG 2 cut(s) 67, 632
AluBI AGCT 9 cut(s) 14, 28, 475, 559, 593, 797, 968, 979, 1096
AluI AGCT 9 cut(s) 14, 28, 475, 559, 593, 797, 968, 979, 1096
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 690, 738
AlwI GGATC 4 cut(s) 26, 46, 671, 1029
AlwNI CAGNNNCTG 2 cut(s) 736, 764
AoxI GGCC 2 cut(s) 715, 958
ApeKI GCWGC 4 cut(s) 296, 764, 809, 968
ApoI RAATTY 4 cut(s) 149, 668, 800, 907
ArsI GACNNNNNNTTYG 2 cut(s) 955, 987
AspLEI GCGC 1 cut(s) 312
AsuHPI GGTGA 3 cut(s) 146, 361, 1122
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 1 cut(s) 960
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 4 cut(s) 308, 751, 821, 955
BccI CCATC 3 cut(s) 362, 642, 988
BciT130I CCWGG 2 cut(s) 69, 634
BcoDI GTCTC 2 cut(s) 690, 738
BfaI CTAG 3 cut(s) 15, 983, 1228
BfmI CTRYAG 3 cut(s) 598, 621, 756
BfoI RGCGCY 1 cut(s) 313
BfrI CTTAAG 2 cut(s) 334, 779
BisI GCNGC 5 cut(s) 297, 762, 765, 810, 969
BlsI GCNGC 5 cut(s) 298, 763, 766, 811, 970
Bme1390I CCNGG 2 cut(s) 69, 634
BmiI GGNNCC 1 cut(s) 860
BmrFI CCNGG 2 cut(s) 69, 634
BmsI GCATC 3 cut(s) 67, 829, 1180
BpmI CTGGAG 3 cut(s) 422, 581, 877
Bsa29I ATCGAT 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 1040
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 319, 613
Bse1I ACTGG 3 cut(s) 439, 860, 1049
Bse3DI GCAATG 2 cut(s) 804, 1155
BseBI CCWGG 2 cut(s) 69, 634
BseCI ATCGAT 1 cut(s) 495
BseGI GGATG 3 cut(s) 653, 938, 1195
BseLI CCNNNNNNNGG 3 cut(s) 234, 319, 613
BseMI GCAATG 2 cut(s) 804, 1155
BseMII CTCAG 1 cut(s) 891
BseNI ACTGG 3 cut(s) 439, 860, 1049
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 4 cut(s) 308, 751, 821, 955
BsgI GTGCAG 1 cut(s) 749
BshFI GGCC 2 cut(s) 717, 960
BshVI ATCGAT 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 477
BslI CCNNNNNNNGG 3 cut(s) 234, 319, 613
BsmAI GTCTC 2 cut(s) 690, 738
BsmI GAATGC 2 cut(s) 1067, 1193
BsnI GGCC 2 cut(s) 717, 960
Bsp1286I GDGCHC 1 cut(s) 477
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 4 cut(s) 18, 51, 676, 1021
BspACI CCGC 4 cut(s) 43, 80, 128, 761
BspANI GGCC 2 cut(s) 717, 960
BspCNI CTCAG 1 cut(s) 892
BspDI ATCGAT 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 860
BspPI GGATC 4 cut(s) 26, 46, 671, 1029
BspTI CTTAAG 2 cut(s) 334, 779
BsrDI GCAATG 2 cut(s) 804, 1155
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 3 cut(s) 439, 860, 1049
BssMI GATC 4 cut(s) 18, 51, 676, 1021
BssNI GRCGYC 1 cut(s) 1040
Bst2UI CCWGG 2 cut(s) 69, 634
Bst4CI ACNGT 2 cut(s) 625, 943
Bst6I CTCTTC 3 cut(s) 389, 573, 1113
BstACI GRCGYC 1 cut(s) 1040
BstAFI CTTAAG 2 cut(s) 334, 779
BstAUI TGTACA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 26, 595
BstDEI CTNAG 3 cut(s) 233, 681, 900
BstEII GGTNACC 1 cut(s) 1128
BstF5I GGATG 3 cut(s) 653, 938, 1195
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 4 cut(s) 21, 54, 679, 1024
BstMAI GTCTC 2 cut(s) 690, 738
BstMBI GATC 4 cut(s) 18, 51, 676, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 11, 818
BstNI CCWGG 2 cut(s) 69, 634
BstNSI RCATGY 2 cut(s) 589, 917
BstPI GGTNACC 1 cut(s) 1128
BstSCI CCNGG 2 cut(s) 67, 632
BstSFI CTRYAG 3 cut(s) 598, 621, 756
BstV1I GCAGC 4 cut(s) 308, 751, 821, 955
BstX2I RGATCY 2 cut(s) 51, 676
BstYI RGATCY 2 cut(s) 51, 676
Bsu15I ATCGAT 1 cut(s) 495
BsuRI GGCC 2 cut(s) 717, 960
BsuTUI ATCGAT 1 cut(s) 495
BtsCI GGATG 3 cut(s) 653, 938, 1195
BtsIMutI CAGTG 1 cut(s) 897
Cac8I GCNNGC 2 cut(s) 26, 595
CaiI CAGNNNCTG 2 cut(s) 736, 764
CfoI GCGC 1 cut(s) 312
ClaI ATCGAT 1 cut(s) 495
CseI GACGC 2 cut(s) 257, 1048
Csp6I GTAC 3 cut(s) 221, 259, 442
CviAII CATG 9 cut(s) 164, 293, 515, 586, 827, 914, 946, 1035, 1115
CviQI GTAC 3 cut(s) 221, 259, 442
DdeI CTNAG 3 cut(s) 233, 681, 900
DpnI GATC 4 cut(s) 20, 53, 678, 1023
DpnII GATC 4 cut(s) 18, 51, 676, 1021
EaeI YGGCCR 1 cut(s) 958
Eam1104I CTCTTC 3 cut(s) 389, 573, 1113
EarI CTCTTC 3 cut(s) 389, 573, 1113
Ecl136II GAGCTC 1 cut(s) 475
Eco147I AGGCCT 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 477
Eco32I GATATC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 2 cut(s) 452, 623
Eco91I GGTNACC 1 cut(s) 1128
EcoICRI GAGCTC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 1128
EcoRI GAATTC 3 cut(s) 149, 668, 800
EcoRII CCWGG 2 cut(s) 67, 632
EcoRV GATATC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 1195
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 9 cut(s) 167, 296, 518, 589, 830, 917, 949, 1038, 1118
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FatI CATG 9 cut(s) 163, 292, 514, 585, 826, 913, 945, 1034, 1114
FauNDI CATATG 1 cut(s) 285
Fnu4HI GCNGC 5 cut(s) 297, 762, 765, 810, 969
FokI GGATG 3 cut(s) 660, 945, 1202
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 5 cut(s) 297, 762, 765, 810, 969
FspBI CTAG 3 cut(s) 15, 983, 1228
GlaI GCGC 1 cut(s) 311
GluI GCNGC 5 cut(s) 297, 762, 765, 810, 969
GsuI CTGGAG 3 cut(s) 422, 581, 877
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 2 cut(s) 717, 960
HgaI GACGC 2 cut(s) 257, 1048
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 1040
Hin1II CATG 9 cut(s) 167, 296, 518, 589, 830, 917, 949, 1038, 1118
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HinfI GANTC 3 cut(s) 565, 603, 1172
HphI GGTGA 3 cut(s) 146, 361, 1122
Hpy166II GTNNAC 3 cut(s) 221, 607, 1167
Hpy188I TCNGA 4 cut(s) 642, 738, 838, 932
Hpy188III TCNNGA 4 cut(s) 365, 470, 571, 1150
Hpy8I GTNNAC 3 cut(s) 221, 607, 1167
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 2 cut(s) 625, 943
HpyCH4V TGCA 8 cut(s) 252, 296, 518, 551, 730, 809, 1160, 1193
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 818
HpyF3I CTNAG 3 cut(s) 233, 681, 900
Hsp92I GRCGYC 1 cut(s) 1040
Hsp92II CATG 9 cut(s) 167, 296, 518, 589, 830, 917, 949, 1038, 1118
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 4 cut(s) 18, 51, 676, 1021
LmnI GCTCC 5 cut(s) 265, 294, 472, 858, 984
Lsp1109I GCAGC 4 cut(s) 308, 751, 821, 955
LweI GCATC 3 cut(s) 67, 829, 1180
MaeI CTAG 3 cut(s) 15, 983, 1228
MaeIII GTNAC 4 cut(s) 399, 425, 1051, 1128
MalI GATC 4 cut(s) 20, 53, 678, 1023
MboI GATC 4 cut(s) 18, 51, 676, 1021
MboII GAAGA 5 cut(s) 406, 458, 590, 1130, 1189
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 2 cut(s) 51, 676
MhlI GDGCHC 1 cut(s) 477
MlsI TGGCCA 1 cut(s) 960
MluCI AATT 6 cut(s) 93, 149, 276, 668, 800, 907
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 1 cut(s) 612
Mox20I TGGCCA 1 cut(s) 960
Mph1103I ATGCAT 1 cut(s) 1195
MscI TGGCCA 1 cut(s) 960
MseI TTAA 6 cut(s) 335, 419, 780, 905, 1083, 1140
MslI CAYNNNNRTG 3 cut(s) 106, 992, 1060
Msp20I TGGCCA 1 cut(s) 960
MspA1I CMGCKG 3 cut(s) 761, 968, 1096
MspCI CTTAAG 2 cut(s) 334, 779
MspR9I CCNGG 2 cut(s) 69, 634
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 2 cut(s) 1067, 1193
MvaI CCWGG 2 cut(s) 69, 634
MwoI GCNNNNNNNGC 2 cut(s) 11, 818
NdeI CATATG 1 cut(s) 285
NdeII GATC 4 cut(s) 18, 51, 676, 1021
NlaIII CATG 9 cut(s) 167, 296, 518, 589, 830, 917, 949, 1038, 1118
NlaIV GGNNCC 1 cut(s) 860
NmuCI GTSAC 3 cut(s) 425, 1051, 1128
NsiI ATGCAT 1 cut(s) 1195
NspI RCATGY 2 cut(s) 589, 917
PceI AGGCCT 1 cut(s) 717
PciI ACATGT 2 cut(s) 585, 913
PctI GAATGC 2 cut(s) 1067, 1193
PfeI GAWTC 2 cut(s) 565, 1172
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 5 cut(s) 298, 763, 766, 811, 970
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PscI ACATGT 2 cut(s) 585, 913
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 67, 632
PspEI GGTNACC 1 cut(s) 1128
PspGI CCWGG 2 cut(s) 67, 632
PspN4I GGNNCC 1 cut(s) 860
PstNI CAGNNNCTG 2 cut(s) 736, 764
PsuI RGATCY 2 cut(s) 51, 676
PvuII CAGCTG 2 cut(s) 968, 1096
RsaI GTAC 3 cut(s) 222, 260, 443
RsaNI GTAC 3 cut(s) 221, 259, 442
RseI CAYNNNNRTG 3 cut(s) 106, 992, 1060
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 6 cut(s) 335, 419, 780, 905, 1083, 1140
SatI GCNGC 5 cut(s) 297, 762, 765, 810, 969
Sau3AI GATC 4 cut(s) 18, 51, 676, 1021
SchI GAGTC 1 cut(s) 612
ScrFI CCNGG 2 cut(s) 69, 634
SduI GDGCHC 1 cut(s) 477
SfaNI GCATC 3 cut(s) 67, 829, 1180
SfcI CTRYAG 3 cut(s) 598, 621, 756
SmiMI CAYNNNNRTG 3 cut(s) 106, 992, 1060
SmlI CTYRAG 2 cut(s) 334, 779
SmoI CTYRAG 2 cut(s) 334, 779
Sse9I AATT 6 cut(s) 93, 149, 276, 668, 800, 907
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 4 cut(s) 43, 80, 128, 761
SspMI CTAG 3 cut(s) 15, 983, 1228
SstI GAGCTC 1 cut(s) 477
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 2 cut(s) 67, 632
TaaI ACNGT 2 cut(s) 625, 943
TaqI TCGA 2 cut(s) 408, 495
TasI AATT 6 cut(s) 93, 149, 276, 668, 800, 907
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 2 cut(s) 565, 1172
Tru1I TTAA 6 cut(s) 335, 419, 780, 905, 1083, 1140
Tru9I TTAA 6 cut(s) 335, 419, 780, 905, 1083, 1140
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 3 cut(s) 425, 1051, 1128
TseI GCWGC 4 cut(s) 296, 764, 809, 968
Tsp45I GTSAC 3 cut(s) 425, 1051, 1128
TspDTI ATGAA 5 cut(s) 681, 793, 843, 1023, 1131
TspRI CASTG 1 cut(s) 904
Van91I CCANNNNNTGG 1 cut(s) 613
Vha464I CTTAAG 2 cut(s) 334, 779
XapI RAATTY 4 cut(s) 149, 668, 800, 907
XceI RCATGY 2 cut(s) 589, 917
XspI CTAG 3 cut(s) 15, 983, 1228
Zsp2I ATGCAT 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.